Wall clock time and date at job start Wed Apr 1 2020 01:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.45458 * 2 1 4 4 C 1.53038 * 109.46371 * 119.96808 * 2 1 3 5 5 H 1.09007 * 109.53001 * 59.23398 * 4 2 1 6 6 N 1.46500 * 109.50405 * 299.13886 * 4 2 1 7 7 C 1.34776 * 120.00115 * 155.19487 * 6 4 2 8 8 O 1.21284 * 119.99544 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00183 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.47063 * 185.92361 * 9 7 6 11 11 C 1.53000 * 109.47067 * 61.13030 * 10 9 7 12 12 C 1.53005 * 109.46831 * 181.12613 * 10 9 7 13 13 O 1.42895 * 109.46883 * 301.12544 * 10 9 7 14 14 C 1.53114 * 109.28091 * 179.19218 * 4 2 1 15 15 C 1.53117 * 109.16233 * 302.35095 * 14 4 2 16 16 C 1.53037 * 109.27910 * 57.65094 * 15 14 4 17 17 N 1.46841 * 109.46348 * 240.02209 * 2 1 3 18 18 C 1.46900 * 110.99841 * 54.14392 * 17 2 1 19 19 C 1.50697 * 109.47297 * 195.97119 * 18 17 2 20 20 O 1.21289 * 120.00359 * 0.02562 * 19 18 17 21 21 N 1.34787 * 120.00208 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99898 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00001 * 359.97438 * 22 21 19 24 24 C 1.38944 * 119.99733 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00144 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00058 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46788 * 59.99664 * 26 24 22 28 28 H 1.48501 * 109.47017 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47069 * 300.00095 * 26 24 22 30 30 H 1.08995 * 109.47546 * 172.24218 * 1 2 3 31 31 H 1.09008 * 109.47017 * 292.24500 * 1 2 3 32 32 H 1.09000 * 109.46945 * 52.23759 * 1 2 3 33 33 H 0.97001 * 119.99766 * 335.18701 * 6 4 2 34 34 H 1.09001 * 109.47047 * 305.92433 * 9 7 6 35 35 H 1.08994 * 109.46712 * 65.92050 * 9 7 6 36 36 H 1.08992 * 109.47545 * 59.99505 * 11 10 9 37 37 H 1.09000 * 109.46940 * 180.02562 * 11 10 9 38 38 H 1.08999 * 109.46687 * 299.99284 * 11 10 9 39 39 H 1.09004 * 109.46699 * 55.28898 * 12 10 9 40 40 H 1.09000 * 109.46817 * 175.28611 * 12 10 9 41 41 H 1.09002 * 109.47206 * 295.28820 * 12 10 9 42 42 H 0.96701 * 114.00365 * 60.00282 * 13 10 9 43 43 H 1.08999 * 109.52924 * 182.44141 * 14 4 2 44 44 H 1.09007 * 109.57399 * 62.27970 * 14 4 2 45 45 H 1.08997 * 109.50243 * 297.70950 * 15 14 4 46 46 H 1.09000 * 109.53890 * 177.61498 * 15 14 4 47 47 H 1.09005 * 109.46198 * 180.80903 * 16 15 14 48 48 H 1.08995 * 109.45537 * 60.83564 * 16 15 14 49 49 H 1.09000 * 109.47447 * 75.97636 * 18 17 2 50 50 H 1.09001 * 109.47617 * 315.97322 * 18 17 2 51 51 H 0.96999 * 119.99553 * 0.02562 * 21 19 18 52 52 H 0.96996 * 119.99941 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 1 1.6658 -1.7446 1.2584 6 7 1.5689 -0.0181 2.4461 7 6 1.4442 -0.6820 3.6124 8 8 1.7223 -1.8611 3.6717 9 6 0.9602 0.0409 4.8429 10 6 1.0496 -0.8933 6.0514 11 6 2.5066 -1.3055 6.2706 12 6 0.5320 -0.1685 7.2955 13 8 0.2558 -2.0573 5.8134 14 6 3.5709 -0.7360 1.2356 15 6 4.0547 -1.4188 -0.0466 16 6 3.4864 -0.6777 -1.2590 17 7 2.0193 -0.6918 -1.1993 18 6 1.4372 -0.1107 -2.4165 19 6 1.6347 -1.0597 -3.5703 20 8 2.2038 -2.1165 -3.3958 21 7 1.1779 -0.7348 -4.7960 22 6 1.3572 -1.5984 -5.8456 23 1 1.8647 -2.5391 -5.6903 24 6 0.8868 -1.2632 -7.1092 25 7 0.2697 -0.1184 -7.2983 26 14 1.1315 -2.4396 -8.5395 27 1 0.4624 -3.7307 -8.2384 28 1 0.5426 -1.8524 -9.7698 29 1 2.5836 -2.6712 -8.7470 30 1 -0.3634 -1.0182 -0.1387 31 1 -0.3633 0.3891 0.9513 32 1 -0.3633 0.6293 -0.8124 33 1 1.3469 0.9249 2.3987 34 1 1.5816 0.9195 5.0161 35 1 -0.0748 0.3505 4.6988 36 1 3.1121 -0.4176 6.4521 37 1 2.5703 -1.9713 7.1313 38 1 2.8754 -1.8218 5.3843 39 1 -0.4773 0.1985 7.1086 40 1 0.5171 -0.8594 8.1385 41 1 1.1873 0.6716 7.5257 42 1 0.5278 -2.5671 5.0380 43 1 3.9380 -1.2862 2.1020 44 1 3.9466 0.2868 1.2676 45 1 3.7124 -2.4535 -0.0593 46 1 5.1439 -1.3954 -0.0835 47 1 3.8174 -1.1700 -2.1735 48 1 3.8403 0.3532 -1.2530 49 1 1.9284 0.8369 -2.6375 50 1 0.3714 0.0594 -2.2642 51 1 0.7225 0.1102 -4.9355 52 1 0.1429 0.4926 -6.5558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725641346.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:59 Heat of formation + Delta-G solvation = -127.810441 kcal Electronic energy + Delta-G solvation = -31065.567690 eV Core-core repulsion = 26871.637244 eV Total energy + Delta-G solvation = -4193.930446 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.81972 -39.54926 -38.10916 -37.30998 -34.99870 -34.17279 -33.38769 -32.97226 -31.29457 -31.02157 -28.78310 -27.62102 -27.39436 -26.60210 -24.40962 -23.10300 -21.53858 -21.09907 -20.60504 -19.92186 -19.45083 -17.88942 -17.51838 -17.10095 -16.39487 -16.30484 -15.79862 -15.34123 -15.29957 -15.01289 -14.64203 -14.54730 -14.30858 -13.91533 -13.81106 -13.62579 -13.49015 -13.25225 -12.91940 -12.65062 -12.51577 -12.43576 -12.37748 -12.24273 -12.14951 -12.00895 -11.83801 -11.55852 -11.27234 -11.21449 -11.13393 -10.98612 -10.85435 -10.68029 -10.36280 -10.21973 -10.20477 -9.93899 -9.85081 -9.50699 -9.28790 -8.54146 -8.03715 -7.95678 -6.74496 -3.87517 2.27581 2.76384 3.31504 3.35280 3.55373 3.83699 3.89015 4.00114 4.22392 4.30079 4.37299 4.54544 4.62410 4.65669 4.86928 4.90793 4.98868 5.00796 5.07636 5.14567 5.20312 5.24229 5.26025 5.28082 5.43487 5.47116 5.49953 5.58867 5.61367 5.62742 5.64410 5.77750 5.78652 5.83225 5.90944 5.94293 5.97923 6.02858 6.05406 6.15146 6.20450 6.33112 6.43479 7.10539 7.19385 7.28435 7.55995 7.81818 7.96131 8.08976 8.61373 8.81840 9.48701 9.90102 10.68973 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027592 B = 0.002018 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.549899 B =13873.514124 C =14148.850548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.077 3.923 3 H 0.040 0.960 4 C 0.153 3.847 5 H 0.101 0.899 6 N -0.720 5.720 7 C 0.520 3.480 8 O -0.540 6.540 9 C -0.173 4.173 10 C 0.146 3.854 11 C -0.188 4.188 12 C -0.140 4.140 13 O -0.568 6.568 14 C -0.127 4.127 15 C -0.111 4.111 16 C 0.056 3.944 17 N -0.505 5.505 18 C 0.042 3.958 19 C 0.447 3.553 20 O -0.568 6.568 21 N -0.578 5.578 22 C -0.380 4.380 23 H 0.099 0.901 24 C -0.011 4.011 25 N -0.902 5.902 26 Si 1.091 2.909 27 H -0.284 1.284 28 H -0.279 1.279 29 H -0.284 1.284 30 H 0.070 0.930 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.399 0.601 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.057 0.943 37 H 0.061 0.939 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.389 0.611 43 H 0.067 0.933 44 H 0.057 0.943 45 H 0.077 0.923 46 H 0.068 0.932 47 H 0.097 0.903 48 H 0.023 0.977 49 H 0.047 0.953 50 H 0.094 0.906 51 H 0.374 0.626 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.330 7.465 24.875 26.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.032 4.032 3 H 0.058 0.942 4 C 0.048 3.952 5 H 0.119 0.881 6 N -0.370 5.370 7 C 0.307 3.693 8 O -0.418 6.418 9 C -0.213 4.213 10 C 0.104 3.896 11 C -0.245 4.245 12 C -0.197 4.197 13 O -0.381 6.381 14 C -0.166 4.166 15 C -0.149 4.149 16 C -0.072 4.072 17 N -0.230 5.230 18 C -0.089 4.089 19 C 0.233 3.767 20 O -0.451 6.451 21 N -0.217 5.217 22 C -0.509 4.509 23 H 0.117 0.883 24 C -0.213 4.213 25 N -0.542 5.542 26 Si 0.917 3.083 27 H -0.210 1.210 28 H -0.205 1.205 29 H -0.211 1.211 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.233 0.767 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.076 0.924 37 H 0.080 0.920 38 H 0.098 0.902 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.243 0.757 43 H 0.086 0.914 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.115 0.885 48 H 0.041 0.959 49 H 0.065 0.935 50 H 0.112 0.888 51 H 0.207 0.793 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.182 5.387 23.914 24.610 hybrid contribution 0.477 2.108 0.946 2.359 sum 2.659 7.495 24.859 26.100 Atomic orbital electron populations 1.21977 0.93968 1.03505 1.01441 1.21753 0.95846 0.95113 0.90487 0.94218 1.20996 0.93889 0.97892 0.82381 0.88064 1.46082 1.67608 1.13800 1.09540 1.20626 0.76691 0.87486 0.84476 1.90539 1.50525 1.16125 1.84654 1.22531 1.04092 1.00819 0.93861 1.20797 0.91049 0.85329 0.92399 1.22648 0.95887 1.02064 1.03898 1.21779 1.01543 0.99910 0.96489 1.86405 1.58881 1.38996 1.53769 1.21965 0.94913 1.00757 0.98980 1.21504 0.99714 1.00901 0.92825 1.22205 0.86432 0.98032 1.00490 1.61398 1.07684 1.54033 0.99872 1.21950 1.00912 0.95778 0.90299 1.19657 0.85022 0.88719 0.83329 1.90518 1.45744 1.25335 1.83474 1.41940 1.52328 1.19587 1.07838 1.20514 1.39014 1.02663 0.88721 0.88350 1.26489 0.94961 0.99993 0.99826 1.70906 1.40067 1.08897 1.34313 0.83138 0.76652 0.74076 0.74451 1.21005 1.20454 1.21058 0.91059 0.92267 0.92062 0.76718 0.88220 0.87906 0.92393 0.91954 0.90166 0.91916 0.91467 0.91262 0.75656 0.91417 0.92406 0.90459 0.91346 0.88484 0.95853 0.93524 0.88835 0.79283 0.92840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 8.51 37.16 0.32 -1.34 16 2 C 0.08 0.91 2.01 -67.73 -0.14 0.77 16 3 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 4 C 0.15 1.71 2.05 -67.85 -0.14 1.57 16 5 H 0.10 1.44 7.58 -51.92 -0.39 1.05 16 6 N -0.72 -5.92 4.29 -53.73 -0.23 -6.15 16 7 C 0.52 4.80 7.26 -10.99 -0.08 4.72 16 8 O -0.54 -6.71 11.44 -14.44 -0.17 -6.87 16 9 C -0.17 -1.13 4.97 -27.88 -0.14 -1.27 16 10 C 0.15 1.21 1.11 -90.62 -0.10 1.11 16 11 C -0.19 -1.58 8.52 37.16 0.32 -1.26 16 12 C -0.14 -0.91 8.84 37.16 0.33 -0.58 16 13 O -0.57 -6.44 12.94 -55.23 -0.71 -7.15 16 14 C -0.13 -1.42 5.58 -26.61 -0.15 -1.57 16 15 C -0.11 -1.45 6.09 -26.65 -0.16 -1.62 16 16 C 0.06 0.86 5.11 -3.84 -0.02 0.84 16 17 N -0.50 -7.95 4.12 -228.13 -0.94 -8.89 16 18 C 0.04 0.71 5.26 -4.98 -0.03 0.69 16 19 C 0.45 10.38 7.47 -10.98 -0.08 10.29 16 20 O -0.57 -15.22 14.41 5.55 0.08 -15.14 16 21 N -0.58 -14.38 5.28 -10.96 -0.06 -14.44 16 22 C -0.38 -10.61 9.68 -14.93 -0.14 -10.76 16 23 H 0.10 2.92 7.16 -52.48 -0.38 2.54 16 24 C -0.01 -0.29 5.50 -17.47 -0.10 -0.38 16 25 N -0.90 -25.16 13.68 55.50 0.76 -24.40 16 26 Si 1.09 24.28 29.92 -169.99 -5.09 19.19 16 27 H -0.28 -6.12 7.11 56.52 0.40 -5.71 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 29 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.06 0.51 7.30 -51.92 -0.38 0.13 16 32 H 0.06 0.65 6.46 -51.93 -0.34 0.31 16 33 H 0.40 2.23 8.45 -40.82 -0.34 1.89 16 34 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.08 0.83 5.83 -51.93 -0.30 0.53 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 42 H 0.39 4.56 6.24 45.56 0.28 4.84 16 43 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 47 H 0.10 1.83 6.34 -51.93 -0.33 1.50 16 48 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 49 H 0.05 0.73 8.06 -51.93 -0.42 0.31 16 50 H 0.09 1.44 5.56 -51.93 -0.29 1.15 16 51 H 0.37 8.58 6.73 -40.82 -0.27 8.31 16 52 H 0.26 6.96 6.77 -40.82 -0.28 6.68 16 LS Contribution 401.85 15.07 6.06 6.06 Total: -1.00 -33.59 401.85 -8.76 -42.35 By element: Atomic # 1 Polarization: 22.38 SS G_CDS: -8.15 Total: 14.23 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -0.31 Total: 1.23 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.47 Total: -53.89 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.80 Total: -29.17 kcal Atomic # 14 Polarization: 24.28 SS G_CDS: -5.09 Total: 19.19 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -33.59 -8.76 -42.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725641346.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.458 kcal (2) G-P(sol) polarization free energy of solvation -33.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds