Wall clock time and date at job start Wed Apr 1 2020 01:02:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.45458 * 2 1 4 4 C 1.53038 * 109.46371 * 119.96808 * 2 1 3 5 5 H 1.09007 * 109.53001 * 59.23398 * 4 2 1 6 6 N 1.46500 * 109.50405 * 299.13886 * 4 2 1 7 7 C 1.34776 * 120.00115 * 155.19487 * 6 4 2 8 8 O 1.21284 * 119.99544 * 0.02562 * 7 6 4 9 9 C 1.50699 * 120.00183 * 179.97438 * 7 6 4 10 10 C 1.53002 * 109.47063 * 185.92361 * 9 7 6 11 11 C 1.53000 * 109.47067 * 61.13030 * 10 9 7 12 12 C 1.53005 * 109.46831 * 181.12613 * 10 9 7 13 13 O 1.42895 * 109.46883 * 301.12544 * 10 9 7 14 14 C 1.53114 * 109.28091 * 179.19218 * 4 2 1 15 15 C 1.53117 * 109.16233 * 302.35095 * 14 4 2 16 16 C 1.53037 * 109.27910 * 57.65094 * 15 14 4 17 17 N 1.46841 * 109.46348 * 240.02209 * 2 1 3 18 18 C 1.46900 * 110.99841 * 54.14392 * 17 2 1 19 19 C 1.50697 * 109.47297 * 195.97119 * 18 17 2 20 20 O 1.21289 * 120.00359 * 0.02562 * 19 18 17 21 21 N 1.34787 * 120.00208 * 179.97438 * 19 18 17 22 22 C 1.37099 * 119.99898 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00001 * 359.97438 * 22 21 19 24 24 C 1.38944 * 119.99733 * 180.02562 * 22 21 19 25 25 N 1.31415 * 120.00144 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 120.00058 * 179.97438 * 24 22 21 27 27 H 1.48506 * 109.46788 * 59.99664 * 26 24 22 28 28 H 1.48501 * 109.47017 * 179.97438 * 26 24 22 29 29 H 1.48502 * 109.47069 * 300.00095 * 26 24 22 30 30 H 1.08995 * 109.47546 * 172.24218 * 1 2 3 31 31 H 1.09008 * 109.47017 * 292.24500 * 1 2 3 32 32 H 1.09000 * 109.46945 * 52.23759 * 1 2 3 33 33 H 0.97001 * 119.99766 * 335.18701 * 6 4 2 34 34 H 1.09001 * 109.47047 * 305.92433 * 9 7 6 35 35 H 1.08994 * 109.46712 * 65.92050 * 9 7 6 36 36 H 1.08992 * 109.47545 * 59.99505 * 11 10 9 37 37 H 1.09000 * 109.46940 * 180.02562 * 11 10 9 38 38 H 1.08999 * 109.46687 * 299.99284 * 11 10 9 39 39 H 1.09004 * 109.46699 * 55.28898 * 12 10 9 40 40 H 1.09000 * 109.46817 * 175.28611 * 12 10 9 41 41 H 1.09002 * 109.47206 * 295.28820 * 12 10 9 42 42 H 0.96701 * 114.00365 * 60.00282 * 13 10 9 43 43 H 1.08999 * 109.52924 * 182.44141 * 14 4 2 44 44 H 1.09007 * 109.57399 * 62.27970 * 14 4 2 45 45 H 1.08997 * 109.50243 * 297.70950 * 15 14 4 46 46 H 1.09000 * 109.53890 * 177.61498 * 15 14 4 47 47 H 1.09005 * 109.46198 * 180.80903 * 16 15 14 48 48 H 1.08995 * 109.45537 * 60.83564 * 16 15 14 49 49 H 1.09000 * 109.47447 * 75.97636 * 18 17 2 50 50 H 1.09001 * 109.47617 * 315.97322 * 18 17 2 51 51 H 0.96999 * 119.99553 * 0.02562 * 21 19 18 52 52 H 0.96996 * 119.99941 * 0.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0278 0.0000 4 6 2.0399 -0.7208 1.2500 5 1 1.6658 -1.7446 1.2584 6 7 1.5689 -0.0181 2.4461 7 6 1.4442 -0.6820 3.6124 8 8 1.7223 -1.8611 3.6717 9 6 0.9602 0.0409 4.8429 10 6 1.0496 -0.8933 6.0514 11 6 2.5066 -1.3055 6.2706 12 6 0.5320 -0.1685 7.2955 13 8 0.2558 -2.0573 5.8134 14 6 3.5709 -0.7360 1.2356 15 6 4.0547 -1.4188 -0.0466 16 6 3.4864 -0.6777 -1.2590 17 7 2.0193 -0.6918 -1.1993 18 6 1.4372 -0.1107 -2.4165 19 6 1.6347 -1.0597 -3.5703 20 8 2.2038 -2.1165 -3.3958 21 7 1.1779 -0.7348 -4.7960 22 6 1.3572 -1.5984 -5.8456 23 1 1.8647 -2.5391 -5.6903 24 6 0.8868 -1.2632 -7.1092 25 7 0.2697 -0.1184 -7.2983 26 14 1.1315 -2.4396 -8.5395 27 1 0.4624 -3.7307 -8.2384 28 1 0.5426 -1.8524 -9.7698 29 1 2.5836 -2.6712 -8.7470 30 1 -0.3634 -1.0182 -0.1387 31 1 -0.3633 0.3891 0.9513 32 1 -0.3633 0.6293 -0.8124 33 1 1.3469 0.9249 2.3987 34 1 1.5816 0.9195 5.0161 35 1 -0.0748 0.3505 4.6988 36 1 3.1121 -0.4176 6.4521 37 1 2.5703 -1.9713 7.1313 38 1 2.8754 -1.8218 5.3843 39 1 -0.4773 0.1985 7.1086 40 1 0.5171 -0.8594 8.1385 41 1 1.1873 0.6716 7.5257 42 1 0.5278 -2.5671 5.0380 43 1 3.9380 -1.2862 2.1020 44 1 3.9466 0.2868 1.2676 45 1 3.7124 -2.4535 -0.0593 46 1 5.1439 -1.3954 -0.0835 47 1 3.8174 -1.1700 -2.1735 48 1 3.8403 0.3532 -1.2530 49 1 1.9284 0.8369 -2.6375 50 1 0.3714 0.0594 -2.2642 51 1 0.7225 0.1102 -4.9355 52 1 0.1429 0.4926 -6.5558 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725641346.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:02:54 Heat of formation + Delta-G solvation = -153.753466 kcal Electronic energy + Delta-G solvation = -31066.692664 eV Core-core repulsion = 26871.637244 eV Total energy + Delta-G solvation = -4195.055420 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.64487 -40.75123 -39.61813 -38.20208 -36.42944 -35.72813 -34.44991 -33.69714 -33.09029 -32.19253 -29.55891 -28.68152 -28.18768 -27.61125 -26.25302 -24.27322 -22.59591 -21.95059 -21.40736 -21.26061 -20.69903 -19.92954 -18.46215 -17.95460 -17.72257 -17.29570 -16.67607 -16.61928 -16.50098 -16.08486 -15.75929 -15.61159 -15.49560 -15.41582 -15.15763 -14.97633 -14.51914 -14.12189 -13.96677 -13.75457 -13.41684 -13.35117 -13.25111 -13.11056 -13.02800 -12.97132 -12.89854 -12.75061 -12.63312 -12.47650 -12.13978 -11.95340 -11.92448 -11.87611 -11.85712 -11.81690 -11.46223 -11.38146 -10.91322 -10.71657 -10.35141 -10.08229 -10.07886 -9.24951 -8.90954 -6.04420 1.52921 1.54127 1.58876 1.81900 1.98053 2.03485 2.41601 2.74261 3.17372 3.24478 3.37577 3.53638 3.65252 3.73322 3.83046 3.97554 3.98315 4.08666 4.16206 4.22507 4.28676 4.30596 4.32096 4.37752 4.53578 4.56378 4.58302 4.65325 4.76092 4.77865 4.79217 4.89075 4.92758 4.93051 4.99340 5.06147 5.07866 5.17999 5.21415 5.29218 5.32569 5.40168 5.48009 5.61253 5.93371 5.99667 6.18143 6.52485 6.60572 6.78257 6.78332 7.28771 7.46984 7.97385 8.56971 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027592 B = 0.002018 C = 0.001978 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1014.549899 B =13873.514124 C =14148.850548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.081 3.919 3 H 0.069 0.931 4 C 0.161 3.839 5 H 0.064 0.936 6 N -0.705 5.705 7 C 0.515 3.485 8 O -0.576 6.576 9 C -0.162 4.162 10 C 0.133 3.867 11 C -0.184 4.184 12 C -0.138 4.138 13 O -0.589 6.589 14 C -0.117 4.117 15 C -0.106 4.106 16 C 0.059 3.941 17 N -0.531 5.531 18 C 0.056 3.944 19 C 0.445 3.555 20 O -0.609 6.609 21 N -0.590 5.590 22 C -0.407 4.407 23 H 0.071 0.929 24 C -0.043 4.043 25 N -0.917 5.917 26 Si 1.132 2.868 27 H -0.275 1.275 28 H -0.272 1.272 29 H -0.273 1.273 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.417 0.583 34 H 0.134 0.866 35 H 0.119 0.881 36 H 0.079 0.921 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.055 0.945 41 H 0.095 0.905 42 H 0.383 0.617 43 H 0.062 0.938 44 H 0.082 0.918 45 H 0.047 0.953 46 H 0.083 0.917 47 H 0.052 0.948 48 H 0.046 0.954 49 H 0.072 0.928 50 H 0.116 0.884 51 H 0.384 0.616 52 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.136 10.501 26.479 28.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.027 4.027 3 H 0.087 0.913 4 C 0.056 3.944 5 H 0.082 0.918 6 N -0.357 5.357 7 C 0.304 3.696 8 O -0.457 6.457 9 C -0.202 4.202 10 C 0.092 3.908 11 C -0.241 4.241 12 C -0.195 4.195 13 O -0.401 6.401 14 C -0.155 4.155 15 C -0.145 4.145 16 C -0.068 4.068 17 N -0.257 5.257 18 C -0.075 4.075 19 C 0.233 3.767 20 O -0.494 6.494 21 N -0.229 5.229 22 C -0.536 4.536 23 H 0.089 0.911 24 C -0.241 4.241 25 N -0.557 5.557 26 Si 0.952 3.048 27 H -0.201 1.201 28 H -0.197 1.197 29 H -0.199 1.199 30 H 0.062 0.938 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.254 0.746 34 H 0.152 0.848 35 H 0.137 0.863 36 H 0.098 0.902 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.075 0.925 41 H 0.114 0.886 42 H 0.236 0.764 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.066 0.934 46 H 0.102 0.898 47 H 0.071 0.929 48 H 0.064 0.936 49 H 0.090 0.910 50 H 0.134 0.866 51 H 0.218 0.782 52 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 1.973 8.486 25.558 27.002 hybrid contribution 0.567 1.127 0.558 1.379 sum 2.540 9.612 26.116 27.945 Atomic orbital electron populations 1.21978 0.93240 1.02127 1.03325 1.21817 0.96343 0.95994 0.88528 0.91295 1.20664 0.93860 0.96408 0.83494 0.91808 1.45853 1.67155 1.14481 1.08222 1.21191 0.75979 0.87136 0.85286 1.90547 1.51995 1.18018 1.85188 1.22513 1.05568 1.00910 0.91197 1.21126 0.90577 0.84929 0.94144 1.22600 0.96521 1.02630 1.02379 1.21808 1.02396 1.00245 0.95028 1.86390 1.59818 1.40341 1.53571 1.21864 0.94797 1.01642 0.97229 1.21445 1.00552 0.99196 0.93303 1.22086 0.86543 0.98922 0.99265 1.61284 1.07943 1.55731 1.00710 1.21795 1.02703 0.94571 0.88394 1.20851 0.82751 0.88959 0.84177 1.90497 1.47008 1.27602 1.84315 1.41988 1.53184 1.19731 1.08035 1.20470 1.40091 1.02671 0.90366 0.91138 1.27756 0.93931 1.00716 1.01729 1.70971 1.40839 1.09388 1.34498 0.82645 0.77323 0.72758 0.72062 1.20064 1.19670 1.19894 0.93829 0.89447 0.91330 0.74556 0.84779 0.86342 0.90188 0.92782 0.92496 0.91466 0.92543 0.88641 0.76353 0.91968 0.89957 0.93442 0.89847 0.92935 0.93570 0.91020 0.86644 0.78206 0.92982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.89 8.51 71.98 0.61 -2.27 16 2 C 0.08 1.71 2.01 44.94 0.09 1.80 16 3 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 4 C 0.16 3.37 2.05 45.04 0.09 3.46 16 5 H 0.06 1.86 7.58 -2.38 -0.02 1.84 16 6 N -0.71 -9.53 4.29 -442.28 -1.90 -11.42 16 7 C 0.52 8.51 7.26 87.66 0.64 9.15 16 8 O -0.58 -14.37 11.44 16.08 0.18 -14.19 16 9 C -0.16 -1.58 4.97 29.85 0.15 -1.44 16 10 C 0.13 1.97 1.11 -10.79 -0.01 1.96 16 11 C -0.18 -2.87 8.52 71.98 0.61 -2.26 16 12 C -0.14 -1.42 8.84 71.98 0.64 -0.79 16 13 O -0.59 -13.27 12.94 -129.86 -1.68 -14.95 16 14 C -0.12 -2.41 5.58 30.67 0.17 -2.23 16 15 C -0.11 -2.78 6.09 30.65 0.19 -2.60 16 16 C 0.06 1.80 5.11 86.33 0.44 2.24 16 17 N -0.53 -16.32 4.12 -875.68 -3.61 -19.93 16 18 C 0.06 1.85 5.26 85.56 0.45 2.30 16 19 C 0.45 21.05 7.47 87.65 0.65 21.70 16 20 O -0.61 -34.12 14.41 -3.06 -0.04 -34.16 16 21 N -0.59 -29.86 5.28 -306.98 -1.62 -31.48 16 22 C -0.41 -23.35 9.68 84.04 0.81 -22.54 16 23 H 0.07 4.37 7.16 -2.91 -0.02 4.35 16 24 C -0.04 -2.36 5.50 84.92 0.47 -1.89 16 25 N -0.92 -51.09 13.68 21.66 0.30 -50.79 16 26 Si 1.13 48.98 29.92 68.60 2.05 51.03 16 27 H -0.28 -11.43 7.11 99.48 0.71 -10.72 16 28 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 29 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 30 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.09 1.18 7.30 -2.38 -0.02 1.17 16 32 H 0.07 1.23 6.46 -2.39 -0.02 1.22 16 33 H 0.42 2.71 8.45 -92.71 -0.78 1.93 16 34 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 38 H 0.06 1.18 5.83 -2.39 -0.01 1.16 16 39 H 0.07 0.64 8.14 -2.38 -0.02 0.62 16 40 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 41 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.38 9.35 6.24 -74.06 -0.46 8.89 16 43 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 45 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 47 H 0.05 2.06 6.34 -2.38 -0.02 2.05 16 48 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 49 H 0.07 2.04 8.06 -2.39 -0.02 2.02 16 50 H 0.12 3.31 5.56 -2.39 -0.01 3.30 16 51 H 0.38 17.71 6.73 -92.71 -0.62 17.08 16 52 H 0.26 13.89 6.77 -92.71 -0.63 13.26 16 Total: -1.00 -77.77 401.85 -1.10 -78.87 By element: Atomic # 1 Polarization: 41.20 SS G_CDS: -0.78 Total: 40.42 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: 6.00 Total: 6.61 kcal Atomic # 7 Polarization: -106.79 SS G_CDS: -6.83 Total: -113.63 kcal Atomic # 8 Polarization: -61.77 SS G_CDS: -1.54 Total: -63.31 kcal Atomic # 14 Polarization: 48.98 SS G_CDS: 2.05 Total: 51.03 kcal Total: -77.77 -1.10 -78.87 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725641346.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.879 kcal (2) G-P(sol) polarization free energy of solvation -77.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds