Wall clock time and date at job start Wed Apr 1 2020 01:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.45635 * 2 1 4 4 C 1.53036 * 109.45820 * 119.97059 * 2 1 3 5 5 H 1.08999 * 109.50812 * 299.13420 * 4 2 1 6 6 N 1.46507 * 109.53706 * 59.23591 * 4 2 1 7 7 C 1.34779 * 119.99971 * 204.89792 * 6 4 2 8 8 O 1.21275 * 119.99883 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99537 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.46904 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47241 * 59.99999 * 10 9 7 12 12 C 1.53001 * 109.47144 * 180.02562 * 10 9 7 13 13 O 1.42897 * 109.46900 * 300.00194 * 10 9 7 14 14 C 1.53119 * 109.27681 * 179.19233 * 4 2 1 15 15 C 1.53123 * 109.16386 * 302.34715 * 14 4 2 16 16 C 1.53039 * 109.27593 * 57.65343 * 15 14 4 17 17 N 1.46841 * 109.46086 * 240.02187 * 2 1 3 18 18 C 1.46903 * 111.00118 * 54.15269 * 17 2 1 19 19 C 1.50703 * 109.47101 * 199.71875 * 18 17 2 20 20 O 1.21293 * 119.99843 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99813 * 180.02562 * 19 18 17 22 22 C 1.37102 * 119.99696 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00014 * 359.97438 * 22 21 19 24 24 C 1.38948 * 119.99784 * 179.97438 * 22 21 19 25 25 N 1.31418 * 120.00255 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99970 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46921 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47113 * 119.99941 * 26 24 22 29 29 H 1.48499 * 109.47066 * 239.99979 * 26 24 22 30 30 H 1.09000 * 109.47048 * 291.88470 * 1 2 3 31 31 H 1.09007 * 109.46960 * 51.87940 * 1 2 3 32 32 H 1.08998 * 109.47648 * 171.88027 * 1 2 3 33 33 H 0.96999 * 119.99640 * 24.89980 * 6 4 2 34 34 H 1.09001 * 109.47688 * 299.99737 * 9 7 6 35 35 H 1.09003 * 109.47284 * 60.00591 * 9 7 6 36 36 H 1.09004 * 109.46762 * 59.99899 * 11 10 9 37 37 H 1.08997 * 109.47357 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.47311 * 300.00935 * 11 10 9 39 39 H 1.09001 * 109.46901 * 59.99983 * 12 10 9 40 40 H 1.08997 * 109.47013 * 180.02562 * 12 10 9 41 41 H 1.09001 * 109.46873 * 299.99679 * 12 10 9 42 42 H 0.96696 * 114.00685 * 299.99981 * 13 10 9 43 43 H 1.09003 * 109.52235 * 62.25385 * 14 4 2 44 44 H 1.09003 * 109.52486 * 182.37723 * 14 4 2 45 45 H 1.08998 * 109.50492 * 177.59640 * 15 14 4 46 46 H 1.08996 * 109.50136 * 297.71269 * 15 14 4 47 47 H 1.08997 * 109.46108 * 60.83502 * 16 15 14 48 48 H 1.08995 * 109.45804 * 180.80722 * 16 15 14 49 49 H 1.08998 * 109.46481 * 319.70970 * 18 17 2 50 50 H 1.09001 * 109.47432 * 79.71641 * 18 17 2 51 51 H 0.96995 * 120.00028 * 359.97438 * 21 19 18 52 52 H 0.96994 * 120.00231 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7208 1.2500 5 1 1.6894 -0.1981 2.1400 6 7 1.5371 -2.0969 1.2613 7 6 1.4109 -2.7587 2.4286 8 8 1.7130 -2.2149 3.4697 9 6 0.8932 -4.1739 2.4402 10 6 0.8475 -4.6884 3.8804 11 6 -0.0805 -3.7991 4.7105 12 6 0.3226 -6.1255 3.8922 13 8 2.1623 -4.6575 4.4392 14 6 3.5708 -0.7361 1.2357 15 6 4.0547 -1.4189 -0.0466 16 6 3.4865 -0.6778 -1.2590 17 7 2.0192 -0.6918 -1.1993 18 6 1.4373 -0.1106 -2.4165 19 6 1.5527 -1.0979 -3.5493 20 8 2.0692 -2.1790 -3.3612 21 7 1.0828 -0.7789 -4.7716 22 6 1.1882 -1.6769 -5.8022 23 1 1.6481 -2.6396 -5.6348 24 6 0.7032 -1.3483 -7.0622 25 7 0.1431 -0.1771 -7.2659 26 14 0.8475 -2.5715 -8.4667 27 1 1.5129 -3.8069 -7.9807 28 1 -0.5078 -2.9053 -8.9736 29 1 1.6526 -1.9744 -9.5624 30 1 -0.3633 0.3831 0.9536 31 1 -0.3633 0.6344 -0.8085 32 1 -0.3634 -1.0173 -0.1451 33 1 1.2951 -2.5317 0.4286 34 1 -0.1099 -4.1975 2.0144 35 1 1.5541 -4.8074 1.8486 36 1 -1.0834 -3.8227 4.2842 37 1 -0.1127 -4.1654 5.7366 38 1 0.2938 -2.7754 4.7020 39 1 0.9840 -6.7587 3.3010 40 1 0.2896 -6.4919 4.9182 41 1 -0.6803 -6.1494 3.4658 42 1 2.8052 -5.2002 3.9627 43 1 3.9456 0.2870 1.2673 44 1 3.9378 -1.2854 2.1027 45 1 5.1438 -1.3949 -0.0830 46 1 3.7124 -2.4536 -0.0593 47 1 3.8403 0.3531 -1.2531 48 1 3.8175 -1.1701 -2.1734 49 1 0.3866 0.1210 -2.2421 50 1 1.9728 0.8030 -2.6749 51 1 0.6700 0.0858 -4.9221 52 1 -0.1951 0.0524 -8.1455 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725641349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:17 Heat of formation + Delta-G solvation = -125.207268 kcal Electronic energy + Delta-G solvation = -31605.406762 eV Core-core repulsion = 27411.589197 eV Total energy + Delta-G solvation = -4193.817564 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -40.51042 -39.31406 -37.96864 -37.19700 -34.47743 -33.77676 -33.13385 -32.80123 -31.29818 -31.15197 -28.52200 -27.47145 -27.42930 -26.55586 -24.61573 -22.93558 -21.57793 -21.17018 -20.18877 -19.27840 -18.98649 -17.89066 -17.47644 -16.55184 -16.24585 -15.76440 -15.46010 -15.31074 -15.07845 -14.75153 -14.61937 -14.51737 -14.02510 -13.98973 -13.74830 -13.66700 -13.29358 -12.88510 -12.81017 -12.48754 -12.39948 -12.31908 -12.17646 -11.97072 -11.91539 -11.84764 -11.65758 -11.58351 -11.52125 -11.28476 -11.05593 -10.89830 -10.75082 -10.42323 -10.36364 -10.25979 -10.24768 -10.13302 -9.50805 -9.49585 -8.86652 -8.49603 -7.98360 -7.89898 -6.43340 -3.84072 2.75102 3.14250 3.24022 3.25041 3.31576 3.87328 3.91625 4.12387 4.21451 4.48995 4.61489 4.66522 4.79186 4.80431 5.03580 5.06464 5.09914 5.19406 5.20887 5.24583 5.34510 5.36923 5.37773 5.41125 5.52460 5.62693 5.63990 5.71245 5.73945 5.74744 5.80866 5.83416 5.91716 5.95619 6.00136 6.03373 6.08565 6.19880 6.27419 6.29855 6.38650 6.45094 6.68396 7.23209 7.35205 7.53508 7.59520 7.71392 8.05270 8.39767 8.60729 9.17139 9.53935 10.05760 10.74569 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.002560 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.582465 B =10935.682975 C =11794.781166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.051 0.949 4 C 0.161 3.839 5 H 0.087 0.913 6 N -0.711 5.711 7 C 0.513 3.487 8 O -0.529 6.529 9 C -0.173 4.173 10 C 0.146 3.854 11 C -0.152 4.152 12 C -0.180 4.180 13 O -0.544 6.544 14 C -0.133 4.133 15 C -0.111 4.111 16 C 0.059 3.941 17 N -0.509 5.509 18 C 0.038 3.962 19 C 0.446 3.554 20 O -0.576 6.576 21 N -0.567 5.567 22 C -0.296 4.296 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.928 3.072 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.411 0.589 34 H 0.099 0.901 35 H 0.094 0.906 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.092 0.908 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.368 0.632 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.071 0.929 47 H 0.024 0.976 48 H 0.091 0.909 49 H 0.094 0.906 50 H 0.049 0.951 51 H 0.391 0.609 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.393 -2.630 18.602 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.038 4.038 3 H 0.069 0.931 4 C 0.055 3.945 5 H 0.105 0.895 6 N -0.364 5.364 7 C 0.299 3.701 8 O -0.406 6.406 9 C -0.213 4.213 10 C 0.105 3.895 11 C -0.208 4.208 12 C -0.237 4.237 13 O -0.349 6.349 14 C -0.171 4.171 15 C -0.148 4.148 16 C -0.069 4.069 17 N -0.234 5.234 18 C -0.093 4.093 19 C 0.231 3.769 20 O -0.460 6.460 21 N -0.204 5.204 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.755 3.245 27 H -0.193 1.193 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.086 0.914 33 H 0.248 0.752 34 H 0.118 0.882 35 H 0.112 0.888 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.214 0.786 43 H 0.083 0.917 44 H 0.087 0.913 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.043 0.957 48 H 0.109 0.891 49 H 0.112 0.888 50 H 0.067 0.933 51 H 0.224 0.776 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.429 -2.973 19.752 19.979 hybrid contribution 0.137 0.244 -2.023 2.042 sum 0.565 -2.729 17.729 17.947 Atomic orbital electron populations 1.21926 0.93966 1.03067 1.01607 1.21912 0.95896 0.95618 0.90394 0.93146 1.20897 0.93445 0.82893 0.97215 0.89500 1.46033 1.66126 1.14741 1.09519 1.20401 0.78082 0.87954 0.83691 1.90650 1.49477 1.68908 1.31592 1.22487 1.03944 0.95051 0.99831 1.20871 0.84308 0.93883 0.90415 1.21984 0.97086 1.02513 0.99258 1.22531 1.02002 0.96392 1.02803 1.86691 1.19002 1.72367 1.56811 1.21994 0.95424 1.01032 0.98675 1.21504 0.99395 1.00594 0.93352 1.22142 0.86630 0.98086 1.00004 1.61467 1.07516 1.54148 1.00263 1.21990 1.00941 0.95907 0.90425 1.19761 0.84662 0.88909 0.83541 1.90503 1.48116 1.24368 1.83019 1.41885 1.53073 1.17721 1.07767 1.19720 1.36532 0.98741 0.87611 0.87933 1.25248 0.96889 0.97076 0.98800 1.69618 1.40019 1.20756 1.24039 0.85824 0.77910 0.80271 0.80485 1.19255 1.20785 1.20817 0.92233 0.92049 0.91379 0.75207 0.88224 0.88752 0.92119 0.92520 0.88963 0.92276 0.91597 0.91503 0.78615 0.91683 0.91347 0.91921 0.91004 0.95741 0.89093 0.88837 0.93340 0.77601 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.29 37.16 0.31 -1.33 16 2 C 0.07 0.84 2.15 -67.73 -0.15 0.70 16 3 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 4 C 0.16 1.89 2.25 -67.85 -0.15 1.73 16 5 H 0.09 1.07 7.58 -51.93 -0.39 0.67 16 6 N -0.71 -8.22 3.83 -53.73 -0.21 -8.43 16 7 C 0.51 6.12 7.35 -10.99 -0.08 6.04 16 8 O -0.53 -7.92 12.62 -12.69 -0.16 -8.08 16 9 C -0.17 -1.58 4.95 -27.88 -0.14 -1.72 16 10 C 0.15 1.40 0.98 -90.62 -0.09 1.31 16 11 C -0.15 -1.57 8.52 37.16 0.32 -1.26 16 12 C -0.18 -1.32 8.82 37.16 0.33 -0.99 16 13 O -0.54 -6.10 11.88 -53.48 -0.64 -6.74 16 14 C -0.13 -1.55 5.67 -26.61 -0.15 -1.71 16 15 C -0.11 -1.41 5.93 -26.65 -0.16 -1.56 16 16 C 0.06 0.87 5.11 -3.83 -0.02 0.85 16 17 N -0.51 -7.46 3.53 -228.12 -0.81 -8.27 16 18 C 0.04 0.63 5.31 -4.97 -0.03 0.61 16 19 C 0.45 9.91 7.49 -10.98 -0.08 9.82 16 20 O -0.58 -14.58 14.73 5.55 0.08 -14.50 16 21 N -0.57 -13.83 5.29 -10.96 -0.06 -13.89 16 22 C -0.30 -8.02 9.68 -14.93 -0.14 -8.17 16 23 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 24 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 25 N -0.90 -24.14 13.05 55.50 0.72 -23.42 16 26 Si 0.93 20.66 29.55 -169.99 -5.02 15.64 16 27 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 31 H 0.06 0.67 6.41 -51.92 -0.33 0.34 16 32 H 0.07 0.81 7.68 -51.93 -0.40 0.41 16 33 H 0.41 4.99 7.96 -40.82 -0.32 4.67 16 34 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.09 1.20 5.51 -51.93 -0.29 0.91 16 39 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.37 2.83 9.04 45.56 0.41 3.25 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 1.00 7.73 -51.93 -0.40 0.60 16 47 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 48 H 0.09 1.63 6.69 -51.93 -0.35 1.28 16 49 H 0.09 1.40 5.43 -51.93 -0.28 1.11 16 50 H 0.05 0.75 8.00 -51.93 -0.42 0.34 16 51 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 52 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 405.02 15.07 6.10 6.10 Total: -1.00 -31.82 405.02 -8.41 -40.23 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: -8.10 Total: 16.57 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: -0.33 Total: 4.79 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.35 Total: -54.01 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -0.71 Total: -29.32 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -31.82 -8.41 -40.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725641349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.981 kcal (2) G-P(sol) polarization free energy of solvation -31.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds