Wall clock time and date at job start Wed Apr 1 2020 01:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.45635 * 2 1 4 4 C 1.53036 * 109.45820 * 119.97059 * 2 1 3 5 5 H 1.08999 * 109.50812 * 299.13420 * 4 2 1 6 6 N 1.46507 * 109.53706 * 59.23591 * 4 2 1 7 7 C 1.34779 * 119.99971 * 204.89792 * 6 4 2 8 8 O 1.21275 * 119.99883 * 0.02562 * 7 6 4 9 9 C 1.50696 * 119.99537 * 179.97438 * 7 6 4 10 10 C 1.53006 * 109.46904 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47241 * 59.99999 * 10 9 7 12 12 C 1.53001 * 109.47144 * 180.02562 * 10 9 7 13 13 O 1.42897 * 109.46900 * 300.00194 * 10 9 7 14 14 C 1.53119 * 109.27681 * 179.19233 * 4 2 1 15 15 C 1.53123 * 109.16386 * 302.34715 * 14 4 2 16 16 C 1.53039 * 109.27593 * 57.65343 * 15 14 4 17 17 N 1.46841 * 109.46086 * 240.02187 * 2 1 3 18 18 C 1.46903 * 111.00118 * 54.15269 * 17 2 1 19 19 C 1.50703 * 109.47101 * 199.71875 * 18 17 2 20 20 O 1.21293 * 119.99843 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99813 * 180.02562 * 19 18 17 22 22 C 1.37102 * 119.99696 * 179.97438 * 21 19 18 23 23 H 1.07998 * 120.00014 * 359.97438 * 22 21 19 24 24 C 1.38948 * 119.99784 * 179.97438 * 22 21 19 25 25 N 1.31418 * 120.00255 * 359.97438 * 24 22 21 26 26 Si 1.86803 * 119.99970 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46921 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47113 * 119.99941 * 26 24 22 29 29 H 1.48499 * 109.47066 * 239.99979 * 26 24 22 30 30 H 1.09000 * 109.47048 * 291.88470 * 1 2 3 31 31 H 1.09007 * 109.46960 * 51.87940 * 1 2 3 32 32 H 1.08998 * 109.47648 * 171.88027 * 1 2 3 33 33 H 0.96999 * 119.99640 * 24.89980 * 6 4 2 34 34 H 1.09001 * 109.47688 * 299.99737 * 9 7 6 35 35 H 1.09003 * 109.47284 * 60.00591 * 9 7 6 36 36 H 1.09004 * 109.46762 * 59.99899 * 11 10 9 37 37 H 1.08997 * 109.47357 * 180.02562 * 11 10 9 38 38 H 1.09004 * 109.47311 * 300.00935 * 11 10 9 39 39 H 1.09001 * 109.46901 * 59.99983 * 12 10 9 40 40 H 1.08997 * 109.47013 * 180.02562 * 12 10 9 41 41 H 1.09001 * 109.46873 * 299.99679 * 12 10 9 42 42 H 0.96696 * 114.00685 * 299.99981 * 13 10 9 43 43 H 1.09003 * 109.52235 * 62.25385 * 14 4 2 44 44 H 1.09003 * 109.52486 * 182.37723 * 14 4 2 45 45 H 1.08998 * 109.50492 * 177.59640 * 15 14 4 46 46 H 1.08996 * 109.50136 * 297.71269 * 15 14 4 47 47 H 1.08997 * 109.46108 * 60.83502 * 16 15 14 48 48 H 1.08995 * 109.45804 * 180.80722 * 16 15 14 49 49 H 1.08998 * 109.46481 * 319.70970 * 18 17 2 50 50 H 1.09001 * 109.47432 * 79.71641 * 18 17 2 51 51 H 0.96995 * 120.00028 * 359.97438 * 21 19 18 52 52 H 0.96994 * 120.00231 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8930 1.0277 0.0000 4 6 2.0398 -0.7208 1.2500 5 1 1.6894 -0.1981 2.1400 6 7 1.5371 -2.0969 1.2613 7 6 1.4109 -2.7587 2.4286 8 8 1.7130 -2.2149 3.4697 9 6 0.8932 -4.1739 2.4402 10 6 0.8475 -4.6884 3.8804 11 6 -0.0805 -3.7991 4.7105 12 6 0.3226 -6.1255 3.8922 13 8 2.1623 -4.6575 4.4392 14 6 3.5708 -0.7361 1.2357 15 6 4.0547 -1.4189 -0.0466 16 6 3.4865 -0.6778 -1.2590 17 7 2.0192 -0.6918 -1.1993 18 6 1.4373 -0.1106 -2.4165 19 6 1.5527 -1.0979 -3.5493 20 8 2.0692 -2.1790 -3.3612 21 7 1.0828 -0.7789 -4.7716 22 6 1.1882 -1.6769 -5.8022 23 1 1.6481 -2.6396 -5.6348 24 6 0.7032 -1.3483 -7.0622 25 7 0.1431 -0.1771 -7.2659 26 14 0.8475 -2.5715 -8.4667 27 1 1.5129 -3.8069 -7.9807 28 1 -0.5078 -2.9053 -8.9736 29 1 1.6526 -1.9744 -9.5624 30 1 -0.3633 0.3831 0.9536 31 1 -0.3633 0.6344 -0.8085 32 1 -0.3634 -1.0173 -0.1451 33 1 1.2951 -2.5317 0.4286 34 1 -0.1099 -4.1975 2.0144 35 1 1.5541 -4.8074 1.8486 36 1 -1.0834 -3.8227 4.2842 37 1 -0.1127 -4.1654 5.7366 38 1 0.2938 -2.7754 4.7020 39 1 0.9840 -6.7587 3.3010 40 1 0.2896 -6.4919 4.9182 41 1 -0.6803 -6.1494 3.4658 42 1 2.8052 -5.2002 3.9627 43 1 3.9456 0.2870 1.2673 44 1 3.9378 -1.2854 2.1027 45 1 5.1438 -1.3949 -0.0830 46 1 3.7124 -2.4536 -0.0593 47 1 3.8403 0.3531 -1.2531 48 1 3.8175 -1.1701 -2.1734 49 1 0.3866 0.1210 -2.2421 50 1 1.9728 0.8030 -2.6749 51 1 0.6700 0.0858 -4.9221 52 1 -0.1951 0.0524 -8.1455 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725641349.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:12 Heat of formation + Delta-G solvation = -148.566453 kcal Electronic energy + Delta-G solvation = -31606.419692 eV Core-core repulsion = 27411.589197 eV Total energy + Delta-G solvation = -4194.830494 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.51100 -40.46762 -39.44744 -38.19288 -35.99010 -35.32108 -34.17341 -33.59833 -33.17452 -32.24583 -29.43187 -28.73750 -28.14987 -27.59627 -26.36571 -24.12636 -22.60157 -22.10979 -21.00325 -20.91870 -20.09689 -19.78583 -18.41952 -17.79212 -17.34056 -16.74497 -16.71145 -16.51530 -16.32143 -16.09458 -15.75028 -15.58759 -15.48606 -15.05268 -14.98195 -14.86028 -14.47506 -14.08122 -13.91635 -13.66716 -13.41612 -13.24226 -13.13083 -13.06896 -12.98623 -12.84633 -12.84246 -12.71581 -12.66664 -12.41501 -12.36359 -12.27541 -12.10459 -11.79766 -11.64150 -11.56094 -11.38723 -11.21395 -11.02904 -10.42401 -10.23737 -9.94672 -9.82883 -9.16596 -8.42684 -5.90317 1.38135 1.43318 1.56718 1.83480 2.13361 2.28969 2.35737 2.74256 3.24749 3.42581 3.47516 3.65340 3.75390 3.84234 3.93480 4.01741 4.10169 4.11257 4.29287 4.33233 4.39225 4.42549 4.45169 4.53287 4.58186 4.59921 4.67799 4.74650 4.78692 4.83448 4.88621 4.94262 4.98787 5.00294 5.03845 5.07639 5.12346 5.25203 5.28579 5.30075 5.39559 5.45119 5.48309 5.73574 5.93201 6.13192 6.24828 6.66253 6.76471 6.96766 7.18757 7.46901 7.63910 8.19810 8.75058 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014606 B = 0.002560 C = 0.002373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.582465 B =10935.682975 C =11794.781166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.076 3.924 3 H 0.065 0.935 4 C 0.162 3.838 5 H 0.086 0.914 6 N -0.708 5.708 7 C 0.511 3.489 8 O -0.561 6.561 9 C -0.169 4.169 10 C 0.143 3.857 11 C -0.152 4.152 12 C -0.173 4.173 13 O -0.569 6.569 14 C -0.124 4.124 15 C -0.102 4.102 16 C 0.062 3.938 17 N -0.518 5.518 18 C 0.051 3.949 19 C 0.447 3.553 20 O -0.610 6.610 21 N -0.580 5.580 22 C -0.325 4.325 23 H 0.079 0.921 24 C -0.015 4.015 25 N -0.923 5.923 26 Si 0.989 3.011 27 H -0.273 1.273 28 H -0.273 1.273 29 H -0.274 1.274 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.410 0.590 34 H 0.116 0.884 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.062 0.938 41 H 0.077 0.923 42 H 0.380 0.620 43 H 0.079 0.921 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.056 0.944 47 H 0.039 0.961 48 H 0.053 0.947 49 H 0.115 0.885 50 H 0.065 0.935 51 H 0.394 0.606 52 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.192 -2.560 18.822 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 H 0.083 0.917 4 C 0.057 3.943 5 H 0.104 0.896 6 N -0.360 5.360 7 C 0.298 3.702 8 O -0.440 6.440 9 C -0.209 4.209 10 C 0.102 3.898 11 C -0.209 4.209 12 C -0.230 4.230 13 O -0.376 6.376 14 C -0.163 4.163 15 C -0.139 4.139 16 C -0.066 4.066 17 N -0.244 5.244 18 C -0.080 4.080 19 C 0.234 3.766 20 O -0.495 6.495 21 N -0.218 5.218 22 C -0.454 4.454 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.565 5.565 26 Si 0.813 3.187 27 H -0.197 1.197 28 H -0.198 1.198 29 H -0.200 1.200 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.246 0.754 34 H 0.135 0.865 35 H 0.127 0.873 36 H 0.096 0.904 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.081 0.919 41 H 0.096 0.904 42 H 0.228 0.772 43 H 0.098 0.902 44 H 0.077 0.923 45 H 0.091 0.909 46 H 0.075 0.925 47 H 0.057 0.943 48 H 0.072 0.928 49 H 0.133 0.867 50 H 0.083 0.917 51 H 0.228 0.772 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.159 -2.892 19.976 20.185 hybrid contribution 0.354 0.230 -2.017 2.061 sum 0.195 -2.661 17.959 18.156 Atomic orbital electron populations 1.21909 0.93103 1.02670 1.02610 1.21953 0.96503 0.95962 0.88807 0.91708 1.20888 0.93420 0.83049 0.96987 0.89601 1.46043 1.65841 1.14710 1.09378 1.20866 0.77397 0.88825 0.83079 1.90648 1.50921 1.69843 1.32593 1.22519 1.05029 0.93275 1.00060 1.20965 0.83617 0.95028 0.90155 1.21972 0.98191 1.01042 0.99648 1.22456 1.02767 0.94800 1.03020 1.86653 1.20111 1.73069 1.57735 1.21918 0.95405 1.01542 0.97414 1.21411 0.99942 0.99534 0.93063 1.22047 0.86835 0.98629 0.99064 1.61386 1.07491 1.55018 1.00467 1.21838 1.02711 0.94395 0.89020 1.20772 0.82458 0.89298 0.84054 1.90480 1.49014 1.26307 1.83688 1.41957 1.54036 1.17572 1.08203 1.19650 1.37861 0.98730 0.89203 0.90316 1.25977 0.96213 0.98734 1.00508 1.69678 1.40234 1.21776 1.24806 0.84921 0.78185 0.77969 0.77592 1.19726 1.19790 1.19950 0.90765 0.91638 0.92328 0.75418 0.86546 0.87344 0.90416 0.92798 0.91727 0.91129 0.91869 0.90359 0.77189 0.90234 0.92301 0.90875 0.92491 0.94329 0.92820 0.86720 0.91742 0.77235 0.91514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.87 8.29 71.98 0.60 -2.28 16 2 C 0.08 1.65 2.15 44.94 0.10 1.74 16 3 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 4 C 0.16 3.55 2.25 45.04 0.10 3.65 16 5 H 0.09 1.97 7.58 -2.39 -0.02 1.95 16 6 N -0.71 -15.64 3.83 -442.28 -1.69 -17.34 16 7 C 0.51 11.78 7.35 87.66 0.64 12.43 16 8 O -0.56 -16.67 12.62 14.44 0.18 -16.49 16 9 C -0.17 -2.84 4.95 29.85 0.15 -2.69 16 10 C 0.14 2.56 0.98 -10.79 -0.01 2.55 16 11 C -0.15 -3.06 8.52 71.98 0.61 -2.44 16 12 C -0.17 -2.19 8.82 71.98 0.63 -1.56 16 13 O -0.57 -12.47 11.88 -131.53 -1.56 -14.03 16 14 C -0.12 -2.73 5.67 30.68 0.17 -2.56 16 15 C -0.10 -2.50 5.93 30.65 0.18 -2.31 16 16 C 0.06 1.77 5.11 86.33 0.44 2.21 16 17 N -0.52 -14.53 3.53 -875.65 -3.10 -17.62 16 18 C 0.05 1.62 5.31 85.56 0.45 2.08 16 19 C 0.45 19.95 7.49 87.66 0.66 20.61 16 20 O -0.61 -31.48 14.73 -3.07 -0.05 -31.52 16 21 N -0.58 -28.58 5.29 -306.98 -1.62 -30.20 16 22 C -0.32 -17.90 9.68 84.04 0.81 -17.08 16 23 H 0.08 4.64 7.16 -2.91 -0.02 4.62 16 24 C -0.02 -0.79 5.50 84.92 0.47 -0.33 16 25 N -0.92 -49.08 13.05 21.66 0.28 -48.80 16 26 Si 0.99 42.23 29.55 68.60 2.03 44.26 16 27 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 29 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 30 H 0.07 1.27 8.13 -2.39 -0.02 1.25 16 31 H 0.06 1.25 6.41 -2.38 -0.02 1.23 16 32 H 0.06 1.28 7.68 -2.39 -0.02 1.26 16 33 H 0.41 9.55 7.96 -92.71 -0.74 8.81 16 34 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.07 8.14 -2.39 -0.02 1.06 16 38 H 0.06 1.69 5.51 -2.38 -0.01 1.68 16 39 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 41 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 42 H 0.38 5.61 9.04 -74.06 -0.67 4.94 16 43 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 44 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 46 H 0.06 1.57 7.73 -2.39 -0.02 1.55 16 47 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 48 H 0.05 1.95 6.69 -2.39 -0.02 1.93 16 49 H 0.12 3.18 5.43 -2.39 -0.01 3.17 16 50 H 0.06 1.87 8.00 -2.39 -0.02 1.85 16 51 H 0.39 18.60 7.90 -92.71 -0.73 17.87 16 52 H 0.28 13.74 8.31 -92.71 -0.77 12.97 16 Total: -1.00 -69.56 405.02 -0.71 -70.26 By element: Atomic # 1 Polarization: 48.65 SS G_CDS: -1.19 Total: 47.45 kcal Atomic # 6 Polarization: 8.01 SS G_CDS: 6.01 Total: 14.02 kcal Atomic # 7 Polarization: -107.83 SS G_CDS: -6.13 Total: -113.96 kcal Atomic # 8 Polarization: -60.61 SS G_CDS: -1.43 Total: -62.04 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -69.56 -0.71 -70.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725641349.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.302 kcal (2) G-P(sol) polarization free energy of solvation -69.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds