Wall clock time and date at job start Wed Apr 1 2020 01:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08997 * 109.45346 * 2 1 4 4 C 1.53040 * 109.45726 * 240.02860 * 2 1 3 5 5 H 1.08998 * 109.53561 * 60.84850 * 4 2 1 6 6 N 1.46496 * 109.50525 * 300.74528 * 4 2 1 7 7 C 1.34778 * 119.99577 * 155.19883 * 6 4 2 8 8 O 1.21281 * 120.00531 * 0.02562 * 7 6 4 9 9 C 1.50703 * 119.99623 * 179.97438 * 7 6 4 10 10 C 1.52998 * 109.47006 * 180.02562 * 9 7 6 11 11 C 1.52995 * 109.47418 * 60.00415 * 10 9 7 12 12 C 1.53001 * 109.47277 * 180.02562 * 10 9 7 13 13 O 1.42903 * 109.47336 * 300.00039 * 10 9 7 14 14 C 1.53122 * 109.27329 * 180.80219 * 4 2 1 15 15 C 1.53114 * 109.16074 * 57.66155 * 14 4 2 16 16 C 1.53041 * 109.27579 * 302.34204 * 15 14 4 17 17 N 1.46846 * 109.46139 * 119.98096 * 2 1 3 18 18 C 1.46903 * 111.00036 * 305.84844 * 17 2 1 19 19 C 1.50691 * 109.47156 * 160.22325 * 18 17 2 20 20 O 1.21293 * 119.99974 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99999 * 180.02562 * 19 18 17 22 22 C 1.37100 * 119.99879 * 180.02562 * 21 19 18 23 23 H 1.07999 * 120.00189 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99964 * 180.02562 * 22 21 19 25 25 N 1.31407 * 119.99724 * 179.97438 * 24 22 21 26 26 Si 1.86799 * 119.99859 * 0.02562 * 24 22 21 27 27 H 1.48496 * 109.47134 * 89.99724 * 26 24 22 28 28 H 1.48503 * 109.46992 * 210.00348 * 26 24 22 29 29 H 1.48510 * 109.47036 * 329.99679 * 26 24 22 30 30 H 1.09003 * 109.47284 * 187.75346 * 1 2 3 31 31 H 1.09001 * 109.46357 * 307.75058 * 1 2 3 32 32 H 1.08998 * 109.47455 * 67.74794 * 1 2 3 33 33 H 0.97000 * 120.00139 * 335.19890 * 6 4 2 34 34 H 1.08999 * 109.47400 * 300.00287 * 9 7 6 35 35 H 1.09003 * 109.47288 * 60.00338 * 9 7 6 36 36 H 1.08999 * 109.47063 * 59.99817 * 11 10 9 37 37 H 1.09003 * 109.47407 * 180.02562 * 11 10 9 38 38 H 1.09008 * 109.46666 * 299.99814 * 11 10 9 39 39 H 1.09003 * 109.47077 * 59.99604 * 12 10 9 40 40 H 1.08995 * 109.47749 * 180.02562 * 12 10 9 41 41 H 1.08999 * 109.46875 * 299.99981 * 12 10 9 42 42 H 0.96707 * 113.99861 * 300.00225 * 13 10 9 43 43 H 1.09000 * 109.52168 * 177.56053 * 14 4 2 44 44 H 1.08999 * 109.52797 * 297.74827 * 14 4 2 45 45 H 1.08998 * 109.50921 * 62.28248 * 15 14 4 46 46 H 1.09007 * 109.50712 * 182.40384 * 15 14 4 47 47 H 1.09007 * 109.46198 * 179.19663 * 16 15 14 48 48 H 1.09003 * 109.46401 * 299.17404 * 16 15 14 49 49 H 1.08994 * 109.47294 * 280.23056 * 18 17 2 50 50 H 1.09004 * 109.46329 * 40.22385 * 18 17 2 51 51 H 0.96996 * 120.00172 * 0.02562 * 21 19 18 52 52 H 0.97003 * 119.99414 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0398 -0.7209 -1.2500 5 1 1.6894 -0.1987 -2.1403 6 7 1.5372 -2.0968 -1.2604 7 6 1.4124 -2.7599 -2.4271 8 8 1.7167 -2.2176 -3.4684 9 6 0.8958 -4.1756 -2.4377 10 6 0.8529 -4.6920 -3.8773 11 6 2.2616 -4.6588 -4.4733 12 6 0.3278 -6.1290 -3.8882 13 8 -0.0131 -3.8631 -4.6551 14 6 3.5709 -0.7360 -1.2357 15 6 4.0548 -1.4189 0.0465 16 6 3.4865 -0.6778 1.2589 17 7 2.0193 -0.6919 1.1993 18 6 1.4374 -0.1107 2.4166 19 6 1.5515 -1.0985 3.5489 20 8 2.0672 -2.1801 3.3605 21 7 1.0804 -0.7802 4.7709 22 6 1.1846 -1.6787 5.8011 23 1 1.6446 -2.6414 5.6337 24 6 0.6985 -1.3507 7.0609 25 7 0.7980 -2.2121 8.0482 26 14 -0.0977 0.3141 7.3504 27 1 -1.5558 0.2183 7.0856 28 1 0.1234 0.7304 8.7586 29 1 0.5064 1.3173 6.4370 30 1 -0.3634 -1.0183 0.1386 31 1 -0.3632 0.6292 0.8126 32 1 -0.3634 0.3891 -0.9511 33 1 1.2941 -2.5307 -0.4276 34 1 1.5566 -4.8079 -1.8448 35 1 -0.1077 -4.1994 -2.0128 36 1 2.9221 -5.2911 -3.8800 37 1 2.2309 -5.0263 -5.4991 38 1 2.6352 -3.6347 -4.4657 39 1 -0.6759 -6.1524 -3.4637 40 1 0.2976 -6.4972 -4.9136 41 1 0.9881 -6.7615 -3.2948 42 1 -0.9250 -3.8365 -4.3342 43 1 3.9379 -1.2862 -2.1021 44 1 3.9457 0.2871 -1.2673 45 1 3.7125 -2.4536 0.0592 46 1 5.1440 -1.3948 0.0829 47 1 3.8176 -1.1701 2.1734 48 1 3.8402 0.3532 1.2530 49 1 1.9735 0.8023 2.6754 50 1 0.3869 0.1219 2.2417 51 1 0.6676 0.0846 4.9214 52 1 0.4589 -1.9830 8.9277 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725641352.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:03:28 Heat of formation + Delta-G solvation = -143.758263 kcal Electronic energy + Delta-G solvation = -31663.590129 eV Core-core repulsion = 27468.968133 eV Total energy + Delta-G solvation = -4194.621996 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.52530 -40.53115 -39.53488 -38.20603 -36.02260 -35.34910 -34.18353 -33.65773 -33.60327 -32.25833 -29.49126 -28.82456 -28.16482 -27.60002 -26.22951 -24.08325 -22.59296 -22.08735 -21.16541 -21.01405 -20.24386 -19.98628 -18.41135 -17.79981 -17.34718 -16.86925 -16.64702 -16.58156 -16.39305 -16.14931 -15.75637 -15.40174 -15.33470 -15.19093 -14.92641 -14.79874 -14.54552 -14.27706 -14.12829 -13.82059 -13.61613 -13.29732 -13.09742 -13.08433 -13.01898 -12.87137 -12.84069 -12.71228 -12.68001 -12.45691 -12.38158 -12.23634 -11.97158 -11.79793 -11.63209 -11.56370 -11.40846 -11.22230 -11.03357 -10.41597 -10.31621 -10.18451 -9.84482 -9.16966 -8.37543 -5.97137 1.31646 1.37213 1.45549 1.82692 2.04242 2.25350 2.33619 2.61974 3.18639 3.28137 3.43180 3.65059 3.74474 3.84478 3.92021 4.00682 4.06928 4.09686 4.26658 4.29843 4.38242 4.40802 4.44154 4.46062 4.55233 4.59669 4.67009 4.73899 4.77522 4.83684 4.88436 4.92783 4.98584 5.00917 5.03840 5.06619 5.11493 5.25374 5.29211 5.29796 5.40302 5.46724 5.57350 5.73454 5.94798 6.07187 6.23489 6.65107 6.75703 6.94612 6.97792 7.46311 7.46834 8.04956 8.80248 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015827 B = 0.002590 C = 0.002448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1768.722566 B =10808.621951 C =11433.531902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.077 3.923 3 H 0.070 0.930 4 C 0.161 3.839 5 H 0.086 0.914 6 N -0.708 5.708 7 C 0.511 3.489 8 O -0.561 6.561 9 C -0.170 4.170 10 C 0.145 3.855 11 C -0.152 4.152 12 C -0.173 4.173 13 O -0.567 6.567 14 C -0.124 4.124 15 C -0.104 4.104 16 C 0.062 3.938 17 N -0.523 5.523 18 C 0.048 3.952 19 C 0.456 3.544 20 O -0.601 6.601 21 N -0.597 5.597 22 C -0.321 4.321 23 H 0.056 0.944 24 C -0.017 4.017 25 N -0.938 5.938 26 Si 0.962 3.038 27 H -0.257 1.257 28 H -0.279 1.279 29 H -0.232 1.232 30 H 0.057 0.943 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.409 0.591 34 H 0.111 0.889 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.054 0.946 38 H 0.064 0.936 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.381 0.619 43 H 0.057 0.943 44 H 0.081 0.919 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.051 0.949 48 H 0.044 0.956 49 H 0.076 0.924 50 H 0.124 0.876 51 H 0.387 0.613 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.215 4.693 -21.776 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 H 0.087 0.913 4 C 0.055 3.945 5 H 0.104 0.896 6 N -0.360 5.360 7 C 0.298 3.702 8 O -0.440 6.440 9 C -0.210 4.210 10 C 0.104 3.896 11 C -0.209 4.209 12 C -0.231 4.231 13 O -0.374 6.374 14 C -0.163 4.163 15 C -0.142 4.142 16 C -0.066 4.066 17 N -0.248 5.248 18 C -0.083 4.083 19 C 0.244 3.756 20 O -0.484 6.484 21 N -0.240 5.240 22 C -0.450 4.450 23 H 0.074 0.926 24 C -0.215 4.215 25 N -0.579 5.579 26 Si 0.783 3.217 27 H -0.182 1.182 28 H -0.204 1.204 29 H -0.155 1.155 30 H 0.076 0.924 31 H 0.089 0.911 32 H 0.091 0.909 33 H 0.246 0.754 34 H 0.129 0.871 35 H 0.131 0.869 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.083 0.917 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.229 0.771 43 H 0.076 0.924 44 H 0.100 0.900 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.070 0.930 48 H 0.062 0.938 49 H 0.094 0.906 50 H 0.142 0.858 51 H 0.223 0.777 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -1.275 3.902 -22.816 23.182 hybrid contribution -0.509 0.813 1.786 2.027 sum -1.784 4.715 -21.030 21.626 Atomic orbital electron populations 1.21926 0.92956 1.02726 1.02786 1.21959 0.96585 0.96054 0.88515 0.91256 1.20913 0.93362 0.82988 0.97197 0.89600 1.46047 1.65828 1.14812 1.09327 1.20845 0.77373 0.88842 0.83095 1.90648 1.51007 1.69737 1.32593 1.22521 1.04915 0.93389 1.00130 1.20924 0.91277 0.89541 0.87889 1.21972 0.94636 1.03426 1.00902 1.22458 1.02413 0.95127 1.03081 1.86660 1.23920 1.70476 1.56378 1.21924 0.95473 1.01603 0.97297 1.21425 0.99951 0.99524 0.93284 1.22048 0.86817 0.98827 0.98897 1.61343 1.07534 1.55322 1.00646 1.21927 1.03449 0.94335 0.88596 1.20892 0.81619 0.89325 0.83800 1.90534 1.47889 1.26491 1.83451 1.42066 1.56161 1.16760 1.08986 1.18972 1.38425 0.98395 0.89216 0.92579 1.26071 0.98006 1.03180 0.94268 1.69807 1.47455 1.38016 1.02633 0.85401 0.79517 0.77753 0.79066 1.18185 1.20441 1.15496 0.92432 0.91100 0.90864 0.75428 0.87130 0.86857 0.90777 0.92712 0.91734 0.90886 0.91835 0.90650 0.77069 0.92447 0.90006 0.92717 0.90964 0.92992 0.93822 0.90605 0.85792 0.77745 0.91342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.31 71.98 0.60 -1.90 16 2 C 0.08 1.48 2.15 44.94 0.10 1.58 16 3 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 4 C 0.16 3.30 2.25 45.05 0.10 3.40 16 5 H 0.09 1.87 7.58 -2.39 -0.02 1.85 16 6 N -0.71 -15.08 3.82 -442.28 -1.69 -16.77 16 7 C 0.51 11.56 7.35 87.66 0.64 12.21 16 8 O -0.56 -16.39 12.62 14.42 0.18 -16.21 16 9 C -0.17 -2.84 4.95 29.85 0.15 -2.69 16 10 C 0.14 2.58 0.98 -10.80 -0.01 2.57 16 11 C -0.15 -3.17 8.52 71.98 0.61 -2.56 16 12 C -0.17 -2.22 8.81 71.98 0.63 -1.59 16 13 O -0.57 -11.96 11.88 -131.53 -1.56 -13.52 16 14 C -0.12 -2.58 5.67 30.67 0.17 -2.41 16 15 C -0.10 -2.47 5.93 30.65 0.18 -2.28 16 16 C 0.06 1.66 5.11 86.33 0.44 2.10 16 17 N -0.52 -13.47 3.53 -875.63 -3.09 -16.56 16 18 C 0.05 1.32 5.31 85.55 0.45 1.78 16 19 C 0.46 19.18 7.49 87.65 0.66 19.83 16 20 O -0.60 -30.98 14.74 -3.07 -0.05 -31.02 16 21 N -0.60 -26.85 5.09 -306.98 -1.56 -28.42 16 22 C -0.32 -18.21 10.16 84.04 0.85 -17.36 16 23 H 0.06 3.81 7.39 -2.91 -0.02 3.79 16 24 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 25 N -0.94 -55.84 13.96 21.66 0.30 -55.54 16 26 Si 0.96 37.90 27.74 68.60 1.90 39.81 16 27 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 28 H -0.28 -11.06 7.11 99.48 0.71 -10.36 16 29 H -0.23 -7.61 6.52 99.48 0.65 -6.96 16 30 H 0.06 1.13 7.66 -2.39 -0.02 1.11 16 31 H 0.07 1.07 6.38 -2.39 -0.02 1.05 16 32 H 0.07 1.09 8.13 -2.39 -0.02 1.07 16 33 H 0.41 9.25 7.94 -92.71 -0.74 8.51 16 34 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.06 1.73 5.51 -2.38 -0.01 1.72 16 39 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 40 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.38 5.07 9.05 -74.05 -0.67 4.40 16 43 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.05 1.49 7.73 -2.39 -0.02 1.47 16 46 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 47 H 0.05 1.82 6.69 -2.38 -0.02 1.81 16 48 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 49 H 0.08 1.79 8.00 -2.39 -0.02 1.77 16 50 H 0.12 2.77 5.42 -2.38 -0.01 2.76 16 51 H 0.39 14.42 5.76 -92.71 -0.53 13.89 16 52 H 0.28 15.14 8.31 -92.71 -0.77 14.37 16 Total: -1.00 -77.88 401.86 -0.56 -78.45 By element: Atomic # 1 Polarization: 48.62 SS G_CDS: -1.05 Total: 47.57 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: 6.05 Total: 12.22 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -6.04 Total: -117.29 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -1.43 Total: -60.75 kcal Atomic # 14 Polarization: 37.90 SS G_CDS: 1.90 Total: 39.81 kcal Total: -77.88 -0.56 -78.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725641352.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.311 kcal (2) G-P(sol) polarization free energy of solvation -77.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds