Wall clock time and date at job start Wed Apr 1 2020 00:09:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46728 * 2 1 4 4 O 1.42893 * 109.47403 * 120.00311 * 2 1 3 5 5 C 1.42895 * 114.00279 * 150.00027 * 4 2 1 6 6 C 1.52997 * 109.47269 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46495 * 119.99828 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 12 12 C 1.53787 * 113.61301 * 217.49546 * 11 9 7 13 13 C 1.53778 * 87.08525 * 220.02033 * 12 11 9 14 14 N 1.46898 * 113.61375 * 139.97799 * 13 12 11 15 15 C 1.46898 * 110.99825 * 107.50828 * 14 13 12 16 16 C 1.50699 * 109.47262 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99841 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00119 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00274 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99739 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00138 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99972 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99778 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47190 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47225 * 120.00526 * 23 21 19 26 26 H 1.48500 * 109.47098 * 240.00184 * 23 21 19 27 27 C 1.53781 * 113.61446 * 120.00170 * 11 9 7 28 28 H 1.09001 * 109.47331 * 299.99643 * 1 2 3 29 29 H 1.09004 * 109.47368 * 59.99853 * 1 2 3 30 30 H 1.09003 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46687 * 240.00739 * 2 1 3 32 32 H 1.08996 * 109.47575 * 300.00373 * 3 2 1 33 33 H 1.08996 * 109.47491 * 60.00531 * 3 2 1 34 34 H 1.09008 * 109.47032 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47102 * 60.00096 * 5 4 2 36 36 H 1.09004 * 109.47055 * 300.00038 * 5 4 2 37 37 H 1.09001 * 109.46832 * 60.00112 * 6 5 4 38 38 H 1.09000 * 109.47611 * 300.00409 * 6 5 4 39 39 H 1.08997 * 109.47477 * 90.00366 * 10 9 7 40 40 H 1.09004 * 109.46971 * 209.99938 * 10 9 7 41 41 H 1.08993 * 109.47768 * 330.00002 * 10 9 7 42 42 H 1.08999 * 112.85664 * 348.80314 * 11 9 7 43 43 H 1.09001 * 113.61302 * 334.57228 * 12 11 9 44 44 H 1.09000 * 113.61187 * 105.47029 * 12 11 9 45 45 H 1.08997 * 113.61270 * 270.88519 * 13 12 11 46 46 H 1.00888 * 111.00445 * 343.55009 * 14 13 12 47 47 H 1.09006 * 109.46993 * 299.99912 * 15 14 13 48 48 H 1.09004 * 109.47426 * 59.99282 * 15 14 13 49 49 H 0.97003 * 119.99741 * 0.02562 * 18 16 15 50 50 H 0.97000 * 119.99449 * 180.02562 * 22 21 19 51 51 H 1.08991 * 113.61772 * 254.52599 * 27 11 9 52 52 H 1.09000 * 113.61394 * 25.42965 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9885 6 6 3.6761 -2.0081 2.2944 7 6 5.0043 -2.6950 2.1062 8 8 5.5675 -2.6424 1.0335 9 7 5.5661 -3.3676 3.1302 10 6 4.8853 -3.4315 4.4258 11 6 6.8574 -4.0348 2.9473 12 6 6.9652 -5.3804 3.6840 13 6 8.4080 -4.9822 4.0370 14 7 8.8001 -5.3437 5.4058 15 6 9.7400 -6.4726 5.4033 16 6 10.1192 -6.8137 6.8213 17 8 9.6527 -6.1785 7.7433 18 7 10.9767 -7.8246 7.0651 19 6 11.3221 -8.1346 8.3551 20 1 10.9068 -7.5690 9.1760 21 6 12.2057 -9.1771 8.6063 22 7 12.7107 -9.8656 7.6074 23 14 12.6757 -9.5999 10.3641 24 1 11.9751 -8.6823 11.2982 25 1 12.2815 -11.0010 10.6586 26 1 14.1437 -9.4528 10.5330 27 6 7.9562 -3.5193 3.8916 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 4.0200 -0.5873 0.7124 36 1 3.1809 -2.0706 0.1984 37 1 2.9222 -2.7452 2.5709 38 1 3.7613 -1.2617 3.0841 39 1 4.2321 -4.3037 4.4504 40 1 5.6259 -3.5097 5.2218 41 1 4.2916 -2.5288 4.5693 42 1 7.1658 -4.0814 1.9029 43 1 6.3090 -5.4574 4.5509 44 1 6.9001 -6.2457 3.0244 45 1 9.1407 -5.2891 3.2906 46 1 7.9904 -5.5486 5.9717 47 1 9.2687 -7.3368 4.9349 48 1 10.6348 -6.1993 4.8439 49 1 11.3500 -8.3323 6.3276 50 1 13.3272 -10.5936 7.7829 51 1 8.6911 -2.8823 3.3998 52 1 7.5709 -3.0876 4.8153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725773829.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:42 Heat of formation + Delta-G solvation = -101.741101 kcal Electronic energy + Delta-G solvation = -28912.267885 eV Core-core repulsion = 24719.467890 eV Total energy + Delta-G solvation = -4192.799995 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.70360 -39.15512 -38.52864 -37.97418 -35.31383 -34.04687 -33.75514 -32.91196 -31.22656 -31.00666 -27.69327 -27.52598 -26.75991 -25.79478 -25.01295 -23.98009 -22.35712 -21.76659 -20.02312 -19.35877 -18.98027 -17.88632 -17.85812 -16.97088 -16.64574 -16.34466 -15.85009 -15.61745 -15.40373 -15.28064 -14.74916 -14.50986 -14.30224 -14.09583 -13.92537 -13.54857 -13.30265 -13.26858 -13.09511 -12.94618 -12.78999 -12.67394 -12.57834 -12.50708 -12.25968 -12.02175 -11.82179 -11.66584 -11.56319 -11.54169 -11.16150 -11.10064 -11.09334 -10.99803 -10.73236 -10.35141 -10.23285 -10.06099 -9.96290 -9.53065 -8.89018 -8.45850 -8.04396 -7.96334 -6.42794 -3.83611 2.29600 2.53339 3.15591 3.26306 3.30993 3.33539 3.89733 4.09461 4.23105 4.30066 4.38626 4.45895 4.52863 4.54452 4.63759 4.67574 4.76540 4.81123 4.81875 4.86029 5.06249 5.14264 5.15775 5.17696 5.22232 5.26200 5.33939 5.38135 5.39398 5.43801 5.46174 5.47686 5.57818 5.61183 5.72243 5.77162 5.77771 5.78950 5.94029 5.98434 6.02641 6.26090 6.35751 6.82155 7.07724 7.23514 7.54466 7.63255 7.84434 8.05551 8.60117 9.16956 9.53365 10.04577 10.74997 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.043353 B = 0.001373 C = 0.001356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.707291 B =20384.745960 C =20640.677362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 C -0.176 4.176 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.139 4.139 7 C 0.518 3.482 8 O -0.545 6.545 9 N -0.601 5.601 10 C 0.070 3.930 11 C 0.120 3.880 12 C -0.179 4.179 13 C 0.072 3.928 14 N -0.654 5.654 15 C 0.049 3.951 16 C 0.440 3.560 17 O -0.584 6.584 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.137 4.137 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.057 0.943 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.060 0.940 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.119 0.881 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.099 0.901 46 H 0.351 0.649 47 H 0.044 0.956 48 H 0.086 0.914 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.073 0.927 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.232 15.846 -16.159 31.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.025 3.975 3 C -0.234 4.234 4 O -0.306 6.306 5 C 0.001 3.999 6 C -0.178 4.178 7 C 0.307 3.693 8 O -0.422 6.422 9 N -0.333 5.333 10 C -0.073 4.073 11 C 0.016 3.984 12 C -0.219 4.219 13 C -0.040 4.040 14 N -0.285 5.285 15 C -0.083 4.083 16 C 0.225 3.775 17 O -0.469 6.469 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.177 4.177 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.075 0.925 37 H 0.120 0.880 38 H 0.121 0.879 39 H 0.078 0.922 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.137 0.863 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.118 0.882 46 H 0.171 0.829 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.091 0.909 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -20.711 16.600 -15.851 30.916 hybrid contribution 0.125 -1.408 0.049 1.415 sum -20.586 15.192 -15.802 30.072 Atomic orbital electron populations 1.21870 0.93537 1.02743 1.02560 1.22071 0.94938 0.92458 0.88073 1.22309 1.01735 0.96725 1.02613 1.87844 1.36640 1.70147 1.35998 1.22148 0.85484 0.95970 0.96317 1.21516 0.95179 1.01285 0.99856 1.20429 0.86655 0.78543 0.83695 1.90702 1.64458 1.61185 1.25875 1.47795 1.21363 1.52232 1.11887 1.21877 0.98019 1.02309 0.85047 1.22541 0.82404 0.92693 1.00754 1.24214 0.99196 0.97297 1.01195 1.22818 0.93878 0.95923 0.91343 1.60003 1.19482 1.39873 1.09133 1.21728 0.97203 0.92366 0.97012 1.19832 0.84196 0.83603 0.89823 1.90520 1.57480 1.53316 1.45559 1.41875 1.39858 1.29221 1.09054 1.19757 1.24151 1.14468 0.84523 0.87867 1.25261 0.96778 0.96276 0.99604 1.69623 1.31797 1.21681 1.31185 0.85804 0.78266 0.78283 0.82018 1.19206 1.20781 1.20730 1.23549 0.97198 0.97294 0.99635 0.91746 0.91228 0.91975 0.92120 0.91624 0.91725 0.92367 0.92481 0.92492 0.88031 0.87941 0.92191 0.90030 0.90692 0.86288 0.89152 0.90927 0.88247 0.82902 0.93757 0.89541 0.77456 0.91921 0.90853 0.89099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.56 37.16 0.36 -0.45 16 2 C 0.08 0.55 3.34 -26.73 -0.09 0.46 16 3 C -0.18 -1.04 9.53 37.16 0.35 -0.69 16 4 O -0.39 -3.33 9.99 -35.23 -0.35 -3.68 16 5 C 0.08 0.66 5.04 37.16 0.19 0.85 16 6 C -0.14 -1.04 4.62 -27.88 -0.13 -1.17 16 7 C 0.52 5.35 7.67 -10.98 -0.08 5.26 16 8 O -0.54 -7.50 15.46 5.56 0.09 -7.42 16 9 N -0.60 -5.54 3.08 -173.01 -0.53 -6.08 16 10 C 0.07 0.47 8.84 59.84 0.53 0.99 16 11 C 0.12 1.21 4.21 -67.12 -0.28 0.93 16 12 C -0.18 -1.77 7.12 -25.92 -0.18 -1.95 16 13 C 0.07 0.84 4.18 -66.90 -0.28 0.56 16 14 N -0.65 -10.04 6.24 -107.13 -0.67 -10.71 16 15 C 0.05 0.85 6.01 -4.98 -0.03 0.82 16 16 C 0.44 10.26 7.82 -10.99 -0.09 10.17 16 17 O -0.58 -15.68 15.78 5.55 0.09 -15.60 16 18 N -0.56 -14.18 5.29 -10.96 -0.06 -14.23 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.43 13.05 55.50 0.72 -23.71 16 23 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 C -0.14 -1.48 7.42 -25.91 -0.19 -1.67 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.38 7.79 -51.93 -0.40 -0.02 16 32 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.37 7.87 -51.92 -0.41 -0.04 16 35 H 0.06 0.52 7.83 -51.93 -0.41 0.11 16 36 H 0.06 0.51 8.04 -51.93 -0.42 0.09 16 37 H 0.10 0.64 8.11 -51.93 -0.42 0.22 16 38 H 0.10 0.65 7.40 -51.93 -0.38 0.26 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.57 6.34 -51.93 -0.33 0.24 16 41 H 0.07 0.37 6.44 -51.93 -0.33 0.03 16 42 H 0.12 1.34 7.23 -51.93 -0.38 0.97 16 43 H 0.09 0.86 6.40 -51.93 -0.33 0.53 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 1.10 7.87 -51.93 -0.41 0.69 16 46 H 0.35 5.48 7.90 -39.30 -0.31 5.17 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.09 1.38 8.13 -51.93 -0.42 0.96 16 49 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 50 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 51 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.09 1.01 6.92 -51.93 -0.36 0.65 16 LS Contribution 421.22 15.07 6.35 6.35 Total: -1.00 -33.24 421.22 -8.51 -41.75 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -8.95 Total: 11.25 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.17 Total: 6.16 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.54 Total: -54.73 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.18 Total: -26.70 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.24 -8.51 -41.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725773829.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.992 kcal (2) G-P(sol) polarization free energy of solvation -33.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds