Wall clock time and date at job start Wed Apr 1 2020 00:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.46728 * 2 1 4 4 O 1.42893 * 109.47403 * 120.00311 * 2 1 3 5 5 C 1.42895 * 114.00279 * 150.00027 * 4 2 1 6 6 C 1.52997 * 109.47269 * 179.97438 * 5 4 2 7 7 C 1.50706 * 109.47238 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99507 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00020 * 180.02562 * 7 6 5 10 10 C 1.46495 * 119.99828 * 0.02562 * 9 7 6 11 11 C 1.46496 * 119.99544 * 180.02562 * 9 7 6 12 12 C 1.53787 * 113.61301 * 217.49546 * 11 9 7 13 13 C 1.53778 * 87.08525 * 220.02033 * 12 11 9 14 14 N 1.46898 * 113.61375 * 139.97799 * 13 12 11 15 15 C 1.46898 * 110.99825 * 107.50828 * 14 13 12 16 16 C 1.50699 * 109.47262 * 179.97438 * 15 14 13 17 17 O 1.21294 * 119.99841 * 359.97438 * 16 15 14 18 18 N 1.34778 * 120.00119 * 179.97438 * 16 15 14 19 19 C 1.37097 * 120.00274 * 179.97438 * 18 16 15 20 20 H 1.07997 * 119.99739 * 0.02562 * 19 18 16 21 21 C 1.38948 * 120.00138 * 179.97438 * 19 18 16 22 22 N 1.31414 * 119.99972 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 119.99778 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47190 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47225 * 120.00526 * 23 21 19 26 26 H 1.48500 * 109.47098 * 240.00184 * 23 21 19 27 27 C 1.53781 * 113.61446 * 120.00170 * 11 9 7 28 28 H 1.09001 * 109.47331 * 299.99643 * 1 2 3 29 29 H 1.09004 * 109.47368 * 59.99853 * 1 2 3 30 30 H 1.09003 * 109.46997 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46687 * 240.00739 * 2 1 3 32 32 H 1.08996 * 109.47575 * 300.00373 * 3 2 1 33 33 H 1.08996 * 109.47491 * 60.00531 * 3 2 1 34 34 H 1.09008 * 109.47032 * 180.02562 * 3 2 1 35 35 H 1.09001 * 109.47102 * 60.00096 * 5 4 2 36 36 H 1.09004 * 109.47055 * 300.00038 * 5 4 2 37 37 H 1.09001 * 109.46832 * 60.00112 * 6 5 4 38 38 H 1.09000 * 109.47611 * 300.00409 * 6 5 4 39 39 H 1.08997 * 109.47477 * 90.00366 * 10 9 7 40 40 H 1.09004 * 109.46971 * 209.99938 * 10 9 7 41 41 H 1.08993 * 109.47768 * 330.00002 * 10 9 7 42 42 H 1.08999 * 112.85664 * 348.80314 * 11 9 7 43 43 H 1.09001 * 113.61302 * 334.57228 * 12 11 9 44 44 H 1.09000 * 113.61187 * 105.47029 * 12 11 9 45 45 H 1.08997 * 113.61270 * 270.88519 * 13 12 11 46 46 H 1.00888 * 111.00445 * 343.55009 * 14 13 12 47 47 H 1.09006 * 109.46993 * 299.99912 * 15 14 13 48 48 H 1.09004 * 109.47426 * 59.99282 * 15 14 13 49 49 H 0.97003 * 119.99741 * 0.02562 * 18 16 15 50 50 H 0.97000 * 119.99449 * 180.02562 * 22 21 19 51 51 H 1.08991 * 113.61772 * 254.52599 * 27 11 9 52 52 H 1.09000 * 113.61394 * 25.42965 * 27 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9885 6 6 3.6761 -2.0081 2.2944 7 6 5.0043 -2.6950 2.1062 8 8 5.5675 -2.6424 1.0335 9 7 5.5661 -3.3676 3.1302 10 6 4.8853 -3.4315 4.4258 11 6 6.8574 -4.0348 2.9473 12 6 6.9652 -5.3804 3.6840 13 6 8.4080 -4.9822 4.0370 14 7 8.8001 -5.3437 5.4058 15 6 9.7400 -6.4726 5.4033 16 6 10.1192 -6.8137 6.8213 17 8 9.6527 -6.1785 7.7433 18 7 10.9767 -7.8246 7.0651 19 6 11.3221 -8.1346 8.3551 20 1 10.9068 -7.5690 9.1760 21 6 12.2057 -9.1771 8.6063 22 7 12.7107 -9.8656 7.6074 23 14 12.6757 -9.5999 10.3641 24 1 11.9751 -8.6823 11.2982 25 1 12.2815 -11.0010 10.6586 26 1 14.1437 -9.4528 10.5330 27 6 7.9562 -3.5193 3.8916 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4426 -0.0005 35 1 4.0200 -0.5873 0.7124 36 1 3.1809 -2.0706 0.1984 37 1 2.9222 -2.7452 2.5709 38 1 3.7613 -1.2617 3.0841 39 1 4.2321 -4.3037 4.4504 40 1 5.6259 -3.5097 5.2218 41 1 4.2916 -2.5288 4.5693 42 1 7.1658 -4.0814 1.9029 43 1 6.3090 -5.4574 4.5509 44 1 6.9001 -6.2457 3.0244 45 1 9.1407 -5.2891 3.2906 46 1 7.9904 -5.5486 5.9717 47 1 9.2687 -7.3368 4.9349 48 1 10.6348 -6.1993 4.8439 49 1 11.3500 -8.3323 6.3276 50 1 13.3272 -10.5936 7.7829 51 1 8.6911 -2.8823 3.3998 52 1 7.5709 -3.0876 4.8153 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725773829.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:41 Heat of formation + Delta-G solvation = -125.520492 kcal Electronic energy + Delta-G solvation = -28913.299037 eV Core-core repulsion = 24719.467890 eV Total energy + Delta-G solvation = -4193.831147 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.52303 -40.25762 -39.66807 -39.08952 -36.34900 -35.85867 -34.49193 -33.96335 -33.21359 -31.67447 -28.61100 -28.12578 -27.84896 -26.66253 -26.27497 -25.28266 -23.24838 -22.28200 -21.27454 -20.65205 -20.00562 -19.77544 -18.59095 -17.88923 -17.47603 -17.28500 -16.99670 -16.82401 -16.37764 -16.15514 -16.09761 -15.78005 -15.73675 -15.08910 -14.87684 -14.68894 -14.33818 -14.23970 -14.04138 -13.75682 -13.52360 -13.45196 -13.38560 -13.30327 -13.12575 -13.09750 -13.02976 -12.82124 -12.74431 -12.40557 -12.37757 -12.13445 -12.11866 -11.99166 -11.95508 -11.64516 -11.61687 -11.50485 -10.90284 -10.57000 -10.32469 -10.00660 -9.65409 -9.23338 -8.46262 -5.94883 1.37167 1.42682 1.51701 1.56717 1.83068 2.06163 2.29880 2.70838 2.97432 3.21389 3.45034 3.52432 3.65872 3.73634 3.88576 3.94279 3.97002 3.99888 4.12363 4.15118 4.26354 4.29295 4.34149 4.44642 4.48715 4.54774 4.63096 4.65601 4.68722 4.74857 4.75627 4.77595 4.81683 4.90438 4.91157 4.93357 4.97752 5.00053 5.08032 5.16523 5.27911 5.32781 5.41966 5.55868 5.93233 6.14622 6.23253 6.34986 6.44358 6.60841 7.07462 7.13423 7.57265 8.12287 8.71336 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.043353 B = 0.001373 C = 0.001356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.707291 B =20384.745960 C =20640.677362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.396 6.396 5 C 0.081 3.919 6 C -0.130 4.130 7 C 0.514 3.486 8 O -0.586 6.586 9 N -0.599 5.599 10 C 0.065 3.935 11 C 0.124 3.876 12 C -0.165 4.165 13 C 0.069 3.931 14 N -0.667 5.667 15 C 0.064 3.936 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.334 4.334 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.272 1.272 27 C -0.133 4.133 28 H 0.061 0.939 29 H 0.086 0.914 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.049 0.951 35 H 0.046 0.954 36 H 0.048 0.952 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.073 0.927 40 H 0.078 0.922 41 H 0.095 0.905 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.078 0.922 45 H 0.108 0.892 46 H 0.348 0.652 47 H 0.068 0.932 48 H 0.102 0.898 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.070 0.930 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.280 15.857 -16.307 31.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.316 6.316 5 C 0.004 3.996 6 C -0.169 4.169 7 C 0.304 3.696 8 O -0.467 6.467 9 N -0.330 5.330 10 C -0.077 4.077 11 C 0.019 3.981 12 C -0.205 4.205 13 C -0.041 4.041 14 N -0.298 5.298 15 C -0.068 4.068 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.197 1.197 27 C -0.172 4.172 28 H 0.081 0.919 29 H 0.105 0.895 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.125 0.875 43 H 0.115 0.885 44 H 0.097 0.903 45 H 0.126 0.874 46 H 0.168 0.832 47 H 0.086 0.914 48 H 0.120 0.880 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.088 0.912 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -21.771 16.606 -16.010 31.718 hybrid contribution 0.415 -1.354 0.059 1.417 sum -21.355 15.252 -15.952 30.711 Atomic orbital electron populations 1.21871 0.92387 1.02835 1.03305 1.22290 0.95893 0.92717 0.87585 1.22292 1.01171 0.96381 1.03291 1.87824 1.36467 1.70337 1.37007 1.22062 0.85355 0.95515 0.96693 1.21482 0.93884 1.01779 0.99759 1.20897 0.87291 0.78222 0.83174 1.90683 1.65702 1.62765 1.27544 1.47872 1.20972 1.51486 1.12665 1.22089 0.98159 1.04039 0.83432 1.22352 0.82872 0.92944 0.99912 1.24101 0.97810 0.97275 1.01319 1.22909 0.95151 0.96539 0.89540 1.60000 1.19394 1.39085 1.11324 1.21585 0.98574 0.94040 0.92585 1.20919 0.82486 0.82028 0.92091 1.90488 1.58484 1.54288 1.47720 1.41945 1.40663 1.30076 1.08376 1.19712 1.25768 1.15590 0.85253 0.90289 1.26023 0.96078 0.95574 1.03509 1.69680 1.31860 1.21844 1.32785 0.84882 0.78147 0.78174 0.77209 1.19727 1.19594 1.19717 1.23494 0.97356 0.96745 0.99625 0.91941 0.89544 0.92204 0.92022 0.90076 0.91912 0.93226 0.93566 0.93379 0.86235 0.86279 0.90887 0.90353 0.88631 0.87499 0.88500 0.90291 0.87407 0.83241 0.91367 0.87960 0.76988 0.91333 0.91171 0.89307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.56 71.98 0.69 -0.69 16 2 C 0.07 0.92 3.34 30.59 0.10 1.02 16 3 C -0.17 -1.92 9.53 71.98 0.69 -1.23 16 4 O -0.40 -6.50 9.99 -148.98 -1.49 -7.98 16 5 C 0.08 1.34 5.04 71.98 0.36 1.70 16 6 C -0.13 -1.76 4.62 29.85 0.14 -1.62 16 7 C 0.51 10.16 7.67 87.66 0.67 10.83 16 8 O -0.59 -16.25 15.46 -3.02 -0.05 -16.30 16 9 N -0.60 -10.20 3.08 -819.66 -2.53 -12.73 16 10 C 0.06 0.71 8.84 127.77 1.13 1.84 16 11 C 0.12 2.37 4.21 45.52 0.19 2.56 16 12 C -0.17 -2.96 7.12 31.12 0.22 -2.74 16 13 C 0.07 1.50 4.18 45.44 0.19 1.69 16 14 N -0.67 -19.66 6.24 -492.84 -3.08 -22.74 16 15 C 0.06 2.12 6.01 85.56 0.51 2.64 16 16 C 0.44 20.44 7.82 87.66 0.69 21.12 16 17 O -0.62 -33.98 15.78 -3.07 -0.05 -34.03 16 18 N -0.57 -29.13 5.29 -306.99 -1.62 -30.75 16 19 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 20 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 22 N -0.92 -49.44 13.05 21.66 0.28 -49.16 16 23 Si 0.99 42.67 29.55 68.60 2.03 44.70 16 24 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 25 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 C -0.13 -2.73 7.42 31.12 0.23 -2.49 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.06 0.75 7.79 -2.39 -0.02 0.74 16 32 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 34 H 0.05 0.62 7.87 -2.38 -0.02 0.60 16 35 H 0.05 0.85 7.83 -2.39 -0.02 0.83 16 36 H 0.05 0.87 8.04 -2.38 -0.02 0.85 16 37 H 0.12 1.21 8.11 -2.39 -0.02 1.20 16 38 H 0.12 1.23 7.40 -2.39 -0.02 1.22 16 39 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.08 0.95 6.34 -2.38 -0.02 0.93 16 41 H 0.10 0.67 6.44 -2.39 -0.02 0.65 16 42 H 0.11 2.37 7.23 -2.39 -0.02 2.35 16 43 H 0.10 1.64 6.40 -2.39 -0.02 1.63 16 44 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 45 H 0.11 2.18 7.87 -2.39 -0.02 2.16 16 46 H 0.35 10.53 7.90 -89.70 -0.71 9.82 16 47 H 0.07 1.95 8.14 -2.38 -0.02 1.93 16 48 H 0.10 3.08 8.13 -2.38 -0.02 3.06 16 49 H 0.40 19.12 7.90 -92.71 -0.73 18.38 16 50 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 51 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 52 H 0.09 1.88 6.92 -2.39 -0.02 1.86 16 Total: -1.00 -72.26 421.22 0.08 -72.19 By element: Atomic # 1 Polarization: 40.90 SS G_CDS: -0.52 Total: 40.39 kcal Atomic # 6 Polarization: 9.32 SS G_CDS: 7.09 Total: 16.42 kcal Atomic # 7 Polarization: -108.44 SS G_CDS: -6.94 Total: -115.38 kcal Atomic # 8 Polarization: -56.72 SS G_CDS: -1.58 Total: -58.31 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -72.26 0.08 -72.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725773829.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.335 kcal (2) G-P(sol) polarization free energy of solvation -72.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.599 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.185 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds