Wall clock time and date at job start Wed Apr 1 2020 01:40:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46953 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99692 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00146 * 180.02562 * 5 4 3 8 8 C 1.46920 * 120.63050 * 359.71661 * 7 5 4 9 9 C 1.53621 * 108.54355 * 126.37111 * 8 7 5 10 10 C 1.53043 * 109.24177 * 54.85891 * 9 8 7 11 11 C 1.52993 * 109.46044 * 178.49381 * 10 9 8 12 12 H 1.08995 * 109.47716 * 60.06658 * 11 10 9 13 13 C 1.52998 * 109.47202 * 180.02562 * 11 10 9 14 14 N 1.46907 * 109.47228 * 300.06599 * 11 10 9 15 15 C 1.46893 * 111.00069 * 155.00234 * 14 11 10 16 16 C 1.50704 * 109.46991 * 179.97438 * 15 14 11 17 17 O 1.21296 * 119.99801 * 0.02562 * 16 15 14 18 18 N 1.34768 * 120.00059 * 179.97438 * 16 15 14 19 19 C 1.37106 * 120.00323 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99445 * 359.97438 * 19 18 16 21 21 C 1.38942 * 120.00280 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00089 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99982 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47323 * 90.00088 * 23 21 19 25 25 H 1.48503 * 109.47419 * 209.99944 * 23 21 19 26 26 H 1.48502 * 109.47296 * 330.00017 * 23 21 19 27 27 C 1.53049 * 109.53527 * 298.50995 * 10 9 8 28 28 C 1.46923 * 120.62891 * 180.02562 * 7 5 4 29 29 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 30 30 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 31 31 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 33 33 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 34 34 H 1.09000 * 109.47486 * 300.00062 * 4 3 2 35 35 H 1.09001 * 109.47362 * 60.00784 * 4 3 2 36 36 H 1.09003 * 109.58949 * 246.21035 * 8 7 5 37 37 H 1.09006 * 109.58937 * 6.63210 * 8 7 5 38 38 H 1.08999 * 109.63648 * 294.86515 * 9 8 7 39 39 H 1.09002 * 109.45661 * 174.74216 * 9 8 7 40 40 H 1.08995 * 109.45744 * 58.52779 * 10 9 8 41 41 H 1.09000 * 109.47474 * 179.97438 * 13 11 10 42 42 H 1.08998 * 109.47089 * 299.99660 * 13 11 10 43 43 H 1.09001 * 109.47255 * 59.99915 * 13 11 10 44 44 H 1.00900 * 110.99674 * 31.04449 * 14 11 10 45 45 H 1.08998 * 109.47443 * 299.99610 * 15 14 11 46 46 H 1.09001 * 109.47213 * 60.00388 * 15 14 11 47 47 H 0.97006 * 120.00444 * 0.02562 * 18 16 15 48 48 H 0.97006 * 119.99825 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.49763 * 301.41861 * 27 10 9 50 50 H 1.08993 * 109.52055 * 181.32928 * 27 10 9 51 51 H 1.08998 * 109.58857 * 353.36937 * 28 7 5 52 52 H 1.08998 * 109.58602 * 113.79867 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0013 6 8 3.4355 3.5426 0.0017 7 7 5.4888 2.7024 0.0014 8 6 6.3654 1.5234 0.0071 9 6 7.3506 1.6414 -1.1656 10 6 8.0927 2.9764 -1.0684 11 6 9.1023 3.0828 -2.2130 12 1 8.5775 3.0284 -3.1668 13 6 9.8448 4.4170 -2.1158 14 7 10.0657 1.9775 -2.1206 15 6 10.6494 1.6767 -3.4346 16 6 11.6307 0.5409 -3.3002 17 8 11.8244 0.0318 -2.2164 18 7 12.2924 0.0902 -4.3843 19 6 13.1848 -0.9435 -4.2622 20 1 13.3578 -1.3962 -3.2970 21 6 13.8673 -1.4078 -5.3798 22 7 13.6579 -0.8559 -6.5539 23 14 15.0837 -2.8156 -5.2132 24 1 14.3778 -4.1064 -5.4157 25 1 16.1521 -2.6703 -6.2343 26 1 15.6883 -2.7896 -3.8571 27 6 7.0892 4.1279 -1.1651 28 6 6.1010 4.0379 0.0026 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8465 -0.8900 33 1 1.6885 1.8463 0.8900 34 1 3.8567 0.6439 0.8908 35 1 3.8574 0.6437 -0.8892 36 1 6.9153 1.4815 0.9473 37 1 5.7649 0.6209 -0.1078 38 1 6.8052 1.5961 -2.1082 39 1 8.0683 0.8221 -1.1208 40 1 8.6178 3.0313 -0.1149 41 1 10.5644 4.4926 -2.9310 42 1 9.1296 5.2366 -2.1849 43 1 10.3696 4.4721 -1.1621 44 1 9.6372 1.1571 -1.7188 45 1 9.8574 1.3929 -4.1277 46 1 11.1651 2.5590 -3.8137 47 1 12.1372 0.4970 -5.2512 48 1 14.1341 -1.1804 -7.3342 49 1 6.5462 4.0591 -2.1076 50 1 7.6204 5.0786 -1.1196 51 1 5.3260 4.7953 -0.1153 52 1 6.6300 4.1966 0.9423 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731992389.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:20 Heat of formation + Delta-G solvation = -126.047192 kcal Electronic energy + Delta-G solvation = -29891.219111 eV Core-core repulsion = 25697.365125 eV Total energy + Delta-G solvation = -4193.853986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.68115 -38.95196 -38.20910 -37.84234 -36.01118 -33.97107 -33.15379 -32.16849 -31.27800 -31.20717 -29.75444 -27.08332 -26.71235 -25.61482 -24.41532 -23.64364 -23.04091 -21.47449 -20.19582 -19.38111 -19.10721 -17.95619 -17.77729 -16.75027 -16.57215 -16.33975 -15.88884 -15.64280 -15.30744 -15.23230 -14.88381 -14.56469 -14.40576 -14.24684 -14.06284 -13.85733 -13.69019 -13.48852 -13.16381 -12.91924 -12.69155 -12.51288 -12.28668 -12.19840 -11.90126 -11.85086 -11.72225 -11.58997 -11.54460 -11.50406 -11.33275 -11.05805 -10.72662 -10.63233 -10.51564 -10.39940 -10.22096 -10.09699 -10.07699 -9.51523 -8.97955 -8.44308 -8.05922 -7.96243 -6.42273 -3.83214 2.27017 2.51896 3.17207 3.25977 3.31911 3.40694 3.90379 4.06421 4.22367 4.27933 4.38893 4.48210 4.58904 4.61087 4.73504 4.78703 4.93452 4.95932 4.96921 5.01453 5.08896 5.16372 5.20026 5.24746 5.28113 5.28510 5.36472 5.39748 5.41453 5.45342 5.53956 5.62611 5.66496 5.72956 5.74795 5.82338 5.91099 5.99228 6.03457 6.17571 6.19650 6.26957 6.39911 6.71279 7.02833 7.26675 7.54540 7.69644 7.80077 8.05892 8.60642 9.17269 9.53888 10.05211 10.75418 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.001921 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.179253 B =14571.743322 C =16083.064886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.077 3.923 4 C -0.141 4.141 5 C 0.521 3.479 6 O -0.547 6.547 7 N -0.609 5.609 8 C 0.106 3.894 9 C -0.138 4.138 10 C -0.088 4.088 11 C 0.088 3.912 12 H 0.040 0.960 13 C -0.142 4.142 14 N -0.665 5.665 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.128 4.128 28 C 0.112 3.888 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.087 0.913 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.103 0.897 35 H 0.104 0.896 36 H 0.076 0.924 37 H 0.088 0.912 38 H 0.068 0.932 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.348 0.652 45 H 0.042 0.958 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.066 0.934 50 H 0.082 0.918 51 H 0.092 0.908 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.679 8.297 10.534 25.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C 0.000 4.000 4 C -0.181 4.181 5 C 0.310 3.690 6 O -0.425 6.425 7 N -0.343 5.343 8 C -0.017 4.017 9 C -0.177 4.177 10 C -0.107 4.107 11 C -0.022 4.022 12 H 0.058 0.942 13 C -0.200 4.200 14 N -0.300 5.300 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.167 4.167 28 C -0.011 4.011 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.121 0.879 35 H 0.122 0.878 36 H 0.094 0.906 37 H 0.107 0.893 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.170 0.830 45 H 0.059 0.941 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.085 0.915 50 H 0.101 0.899 51 H 0.110 0.890 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.192 8.653 11.271 25.515 hybrid contribution -0.206 -0.743 -1.156 1.389 sum -21.398 7.910 10.116 24.955 Atomic orbital electron populations 1.22739 0.80511 1.02843 1.00197 1.87813 1.20137 1.27914 1.95564 1.22159 0.91876 0.84287 1.01715 1.21520 0.95458 0.95333 1.05774 1.20386 0.81919 0.91066 0.75676 1.90697 1.60510 1.40886 1.50432 1.48132 1.05282 1.07863 1.72977 1.21922 0.92705 0.87602 0.99422 1.22143 0.98358 0.98612 0.98544 1.21298 0.95012 0.94197 1.00164 1.21527 0.91268 0.92857 0.96521 0.94180 1.21856 0.99999 0.95300 1.02811 1.60189 1.36096 1.10756 1.22956 1.21710 0.97250 0.98724 0.90505 1.19827 0.85568 0.86628 0.85339 1.90517 1.68447 1.61047 1.26802 1.41874 1.37375 1.31908 1.08911 1.19704 1.16908 1.09877 0.96388 0.87920 1.25263 0.98800 0.99193 0.94720 1.69618 1.43195 1.42274 0.99230 0.85857 0.79639 0.80606 0.78185 1.20434 1.20930 1.19409 1.22021 0.96686 0.99289 0.98664 1.21645 0.96578 0.84201 0.98636 0.93951 0.93919 0.89446 0.92404 0.92436 0.87888 0.87812 0.90565 0.89341 0.91354 0.89743 0.89784 0.92666 0.92683 0.91909 0.83004 0.94051 0.89699 0.77480 0.91886 0.91518 0.89941 0.88984 0.91276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.40 -3.63 10.70 -35.23 -0.38 -4.01 16 3 C 0.08 0.67 5.23 37.16 0.19 0.86 16 4 C -0.14 -1.10 4.42 -27.88 -0.12 -1.22 16 5 C 0.52 5.22 7.70 -10.98 -0.08 5.14 16 6 O -0.55 -7.25 15.39 5.56 0.09 -7.17 16 7 N -0.61 -5.31 2.97 -172.48 -0.51 -5.82 16 8 C 0.11 0.77 6.37 -3.49 -0.02 0.75 16 9 C -0.14 -1.20 5.17 -26.39 -0.14 -1.34 16 10 C -0.09 -0.81 1.87 -90.58 -0.17 -0.98 16 11 C 0.09 1.01 2.23 -67.71 -0.15 0.86 16 12 H 0.04 0.47 7.80 -51.93 -0.40 0.06 16 13 C -0.14 -1.55 9.06 37.16 0.34 -1.21 16 14 N -0.66 -10.20 5.93 -108.00 -0.64 -10.84 16 15 C 0.05 0.88 5.97 -4.98 -0.03 0.85 16 16 C 0.44 10.29 7.82 -10.99 -0.09 10.21 16 17 O -0.58 -15.63 15.78 5.54 0.09 -15.54 16 18 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 19 C -0.30 -8.31 9.68 -14.93 -0.14 -8.45 16 20 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.46 13.05 55.50 0.72 -23.73 16 23 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 24 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 25 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 C -0.13 -1.04 5.05 -26.58 -0.13 -1.17 16 28 C 0.11 0.94 6.43 -3.69 -0.02 0.92 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.53 8.10 -51.93 -0.42 0.10 16 33 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 34 H 0.10 0.67 7.93 -51.93 -0.41 0.26 16 35 H 0.10 0.72 7.70 -51.93 -0.40 0.32 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.52 5.93 -51.93 -0.31 0.21 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.81 6.16 -51.93 -0.32 0.49 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.05 0.66 7.45 -51.93 -0.39 0.27 16 42 H 0.05 0.48 6.40 -51.93 -0.33 0.15 16 43 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.35 5.40 5.84 -39.29 -0.23 5.17 16 45 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 46 H 0.08 1.39 7.44 -51.93 -0.39 1.01 16 47 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 50 H 0.08 0.60 6.36 -51.93 -0.33 0.27 16 51 H 0.09 0.88 7.01 -51.93 -0.36 0.51 16 52 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 410.40 15.07 6.18 6.18 Total: -1.00 -33.28 410.40 -7.86 -41.14 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -8.77 Total: 11.11 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 0.44 Total: 7.02 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.49 Total: -54.67 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.20 Total: -26.72 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.28 -7.86 -41.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731992389.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.910 kcal (2) G-P(sol) polarization free energy of solvation -33.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds