Wall clock time and date at job start Wed Apr 1 2020 01:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42905 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46728 * 179.97438 * 3 2 1 5 5 C 1.50706 * 109.46953 * 180.02562 * 4 3 2 6 6 O 1.21279 * 119.99692 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00146 * 180.02562 * 5 4 3 8 8 C 1.46920 * 120.63050 * 359.71661 * 7 5 4 9 9 C 1.53621 * 108.54355 * 126.37111 * 8 7 5 10 10 C 1.53043 * 109.24177 * 54.85891 * 9 8 7 11 11 C 1.52993 * 109.46044 * 178.49381 * 10 9 8 12 12 H 1.08995 * 109.47716 * 60.06658 * 11 10 9 13 13 C 1.52998 * 109.47202 * 180.02562 * 11 10 9 14 14 N 1.46907 * 109.47228 * 300.06599 * 11 10 9 15 15 C 1.46893 * 111.00069 * 155.00234 * 14 11 10 16 16 C 1.50704 * 109.46991 * 179.97438 * 15 14 11 17 17 O 1.21296 * 119.99801 * 0.02562 * 16 15 14 18 18 N 1.34768 * 120.00059 * 179.97438 * 16 15 14 19 19 C 1.37106 * 120.00323 * 180.02562 * 18 16 15 20 20 H 1.08004 * 119.99445 * 359.97438 * 19 18 16 21 21 C 1.38942 * 120.00280 * 180.02562 * 19 18 16 22 22 N 1.31415 * 120.00089 * 0.02562 * 21 19 18 23 23 Si 1.86796 * 119.99982 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47323 * 90.00088 * 23 21 19 25 25 H 1.48503 * 109.47419 * 209.99944 * 23 21 19 26 26 H 1.48502 * 109.47296 * 330.00017 * 23 21 19 27 27 C 1.53049 * 109.53527 * 298.50995 * 10 9 8 28 28 C 1.46923 * 120.62891 * 180.02562 * 7 5 4 29 29 H 1.08997 * 109.47171 * 299.99768 * 1 2 3 30 30 H 1.08997 * 109.47442 * 59.99964 * 1 2 3 31 31 H 1.08999 * 109.46926 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47187 * 300.00233 * 3 2 1 33 33 H 1.09001 * 109.46558 * 60.00281 * 3 2 1 34 34 H 1.09000 * 109.47486 * 300.00062 * 4 3 2 35 35 H 1.09001 * 109.47362 * 60.00784 * 4 3 2 36 36 H 1.09003 * 109.58949 * 246.21035 * 8 7 5 37 37 H 1.09006 * 109.58937 * 6.63210 * 8 7 5 38 38 H 1.08999 * 109.63648 * 294.86515 * 9 8 7 39 39 H 1.09002 * 109.45661 * 174.74216 * 9 8 7 40 40 H 1.08995 * 109.45744 * 58.52779 * 10 9 8 41 41 H 1.09000 * 109.47474 * 179.97438 * 13 11 10 42 42 H 1.08998 * 109.47089 * 299.99660 * 13 11 10 43 43 H 1.09001 * 109.47255 * 59.99915 * 13 11 10 44 44 H 1.00900 * 110.99674 * 31.04449 * 14 11 10 45 45 H 1.08998 * 109.47443 * 299.99610 * 15 14 11 46 46 H 1.09001 * 109.47213 * 60.00388 * 15 14 11 47 47 H 0.97006 * 120.00444 * 0.02562 * 18 16 15 48 48 H 0.97006 * 119.99825 * 180.02562 * 22 21 19 49 49 H 1.08997 * 109.49763 * 301.41861 * 27 10 9 50 50 H 1.08993 * 109.52055 * 181.32928 * 27 10 9 51 51 H 1.08998 * 109.58857 * 353.36937 * 28 7 5 52 52 H 1.08998 * 109.58602 * 113.79867 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0013 6 8 3.4355 3.5426 0.0017 7 7 5.4888 2.7024 0.0014 8 6 6.3654 1.5234 0.0071 9 6 7.3506 1.6414 -1.1656 10 6 8.0927 2.9764 -1.0684 11 6 9.1023 3.0828 -2.2130 12 1 8.5775 3.0284 -3.1668 13 6 9.8448 4.4170 -2.1158 14 7 10.0657 1.9775 -2.1206 15 6 10.6494 1.6767 -3.4346 16 6 11.6307 0.5409 -3.3002 17 8 11.8244 0.0318 -2.2164 18 7 12.2924 0.0902 -4.3843 19 6 13.1848 -0.9435 -4.2622 20 1 13.3578 -1.3962 -3.2970 21 6 13.8673 -1.4078 -5.3798 22 7 13.6579 -0.8559 -6.5539 23 14 15.0837 -2.8156 -5.2132 24 1 14.3778 -4.1064 -5.4157 25 1 16.1521 -2.6703 -6.2343 26 1 15.6883 -2.7896 -3.8571 27 6 7.0892 4.1279 -1.1651 28 6 6.1010 4.0379 0.0026 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6885 1.8465 -0.8900 33 1 1.6885 1.8463 0.8900 34 1 3.8567 0.6439 0.8908 35 1 3.8574 0.6437 -0.8892 36 1 6.9153 1.4815 0.9473 37 1 5.7649 0.6209 -0.1078 38 1 6.8052 1.5961 -2.1082 39 1 8.0683 0.8221 -1.1208 40 1 8.6178 3.0313 -0.1149 41 1 10.5644 4.4926 -2.9310 42 1 9.1296 5.2366 -2.1849 43 1 10.3696 4.4721 -1.1621 44 1 9.6372 1.1571 -1.7188 45 1 9.8574 1.3929 -4.1277 46 1 11.1651 2.5590 -3.8137 47 1 12.1372 0.4970 -5.2512 48 1 14.1341 -1.1804 -7.3342 49 1 6.5462 4.0591 -2.1076 50 1 7.6204 5.0786 -1.1196 51 1 5.3260 4.7953 -0.1153 52 1 6.6300 4.1966 0.9423 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731992389.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:19 Heat of formation + Delta-G solvation = -150.183884 kcal Electronic energy + Delta-G solvation = -29892.265757 eV Core-core repulsion = 25697.365125 eV Total energy + Delta-G solvation = -4194.900632 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.43099 -40.26479 -39.41032 -38.67000 -37.03028 -35.91975 -34.10198 -33.26925 -32.89908 -31.97199 -30.71441 -28.16145 -27.64155 -26.62390 -25.72772 -24.62889 -23.73911 -22.30414 -21.20704 -20.91628 -19.99191 -19.83934 -18.56927 -17.86622 -17.39702 -17.25740 -16.97705 -16.55765 -16.47949 -16.20705 -16.10461 -15.77027 -15.52101 -15.39528 -15.16467 -14.98649 -14.55541 -14.38892 -14.21016 -14.02977 -13.67969 -13.53583 -13.41946 -13.26077 -13.03706 -12.92966 -12.83174 -12.67448 -12.44664 -12.41390 -12.34203 -12.19869 -12.11947 -12.08382 -11.54449 -11.48969 -11.42042 -11.35877 -10.86591 -10.70244 -10.31857 -10.00883 -9.70082 -9.28331 -8.46030 -5.94807 1.38621 1.42532 1.51836 1.55269 1.85057 2.05933 2.29674 2.80264 2.93415 3.21323 3.53417 3.55833 3.69838 3.73329 3.88586 3.98537 4.04923 4.11347 4.28361 4.34066 4.36022 4.40440 4.45960 4.46890 4.49774 4.50042 4.52800 4.61899 4.65782 4.71337 4.77144 4.78874 4.83056 4.84254 4.91159 4.93009 5.00661 5.03765 5.13424 5.17931 5.40602 5.41635 5.47801 5.56239 5.93797 6.11830 6.16693 6.32526 6.50859 6.60648 7.06068 7.13176 7.57011 8.11920 8.71314 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013555 B = 0.001921 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.179253 B =14571.743322 C =16083.064886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.079 3.921 4 C -0.136 4.136 5 C 0.518 3.482 6 O -0.585 6.585 7 N -0.606 5.606 8 C 0.108 3.892 9 C -0.136 4.136 10 C -0.081 4.081 11 C 0.089 3.911 12 H 0.044 0.956 13 C -0.140 4.140 14 N -0.677 5.677 15 C 0.066 3.934 16 C 0.439 3.561 17 O -0.621 6.621 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.273 1.273 27 C -0.118 4.118 28 C 0.110 3.890 29 H 0.049 0.951 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.120 0.880 35 H 0.115 0.885 36 H 0.086 0.914 37 H 0.106 0.894 38 H 0.065 0.935 39 H 0.075 0.925 40 H 0.082 0.918 41 H 0.043 0.957 42 H 0.079 0.921 43 H 0.055 0.945 44 H 0.345 0.655 45 H 0.062 0.938 46 H 0.098 0.902 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.060 0.940 50 H 0.094 0.906 51 H 0.080 0.920 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.094 8.191 10.587 25.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.002 3.998 4 C -0.175 4.175 5 C 0.308 3.692 6 O -0.466 6.466 7 N -0.339 5.339 8 C -0.014 4.014 9 C -0.174 4.174 10 C -0.099 4.099 11 C -0.020 4.020 12 H 0.062 0.938 13 C -0.198 4.198 14 N -0.313 5.313 15 C -0.067 4.067 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.198 1.198 27 C -0.156 4.156 28 C -0.012 4.012 29 H 0.068 0.932 30 H 0.066 0.934 31 H 0.120 0.880 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.138 0.862 35 H 0.133 0.867 36 H 0.104 0.896 37 H 0.124 0.876 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.100 0.900 41 H 0.062 0.938 42 H 0.098 0.902 43 H 0.074 0.926 44 H 0.167 0.833 45 H 0.080 0.920 46 H 0.116 0.884 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.079 0.921 50 H 0.113 0.887 51 H 0.098 0.902 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -21.609 8.559 11.309 25.848 hybrid contribution -0.113 -0.673 -1.146 1.333 sum -21.723 7.887 10.163 25.246 Atomic orbital electron populations 1.22937 0.79239 1.04030 1.00815 1.87781 1.21656 1.28010 1.95633 1.22106 0.92544 0.84148 1.01051 1.21507 0.94739 0.94183 1.07069 1.20747 0.82095 0.91408 0.74973 1.90680 1.61389 1.42210 1.52348 1.48210 1.05142 1.08426 1.72094 1.22018 0.92498 0.87681 0.99238 1.22097 0.98325 0.97944 0.99063 1.21224 0.94675 0.95014 0.99035 1.21618 0.91043 0.91645 0.97662 0.93784 1.21862 1.00274 0.95742 1.01941 1.60209 1.37683 1.11609 1.21756 1.21547 0.96393 0.96495 0.92241 1.20866 0.85303 0.87051 0.84153 1.90484 1.69620 1.62523 1.28134 1.41951 1.37671 1.31884 1.09627 1.19675 1.18968 1.11616 0.96005 0.90216 1.26047 0.99940 1.01233 0.94144 1.69679 1.43712 1.43111 0.99674 0.84923 0.77584 0.77741 0.78067 1.19559 1.19657 1.19771 1.21934 0.96181 0.99311 0.98203 1.21669 0.96275 0.83919 0.99309 0.93231 0.93445 0.88025 0.93290 0.92969 0.86203 0.86681 0.89559 0.87623 0.91651 0.90636 0.90001 0.93778 0.90237 0.92610 0.83266 0.92004 0.88395 0.77064 0.91340 0.92105 0.88718 0.90164 0.90130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.15 10.70 -148.98 -1.59 -8.74 16 3 C 0.08 1.32 5.23 71.98 0.38 1.70 16 4 C -0.14 -1.92 4.42 29.85 0.13 -1.79 16 5 C 0.52 9.87 7.70 87.66 0.67 10.55 16 6 O -0.59 -15.44 15.39 -3.03 -0.05 -15.49 16 7 N -0.61 -9.63 2.97 -818.00 -2.43 -12.05 16 8 C 0.11 1.35 6.37 86.51 0.55 1.90 16 9 C -0.14 -2.15 5.17 30.82 0.16 -1.99 16 10 C -0.08 -1.34 1.87 -10.77 -0.02 -1.36 16 11 C 0.09 1.90 2.23 44.91 0.10 2.00 16 12 H 0.04 0.93 7.80 -2.39 -0.02 0.91 16 13 C -0.14 -2.80 9.06 71.98 0.65 -2.15 16 14 N -0.68 -20.07 5.93 -495.59 -2.94 -23.01 16 15 C 0.07 2.22 5.97 85.56 0.51 2.73 16 16 C 0.44 20.61 7.82 87.66 0.69 21.30 16 17 O -0.62 -33.82 15.78 -3.08 -0.05 -33.87 16 18 N -0.57 -29.31 5.29 -306.98 -1.62 -30.93 16 19 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 22 N -0.92 -49.54 13.05 21.66 0.28 -49.25 16 23 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 24 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 C -0.12 -1.68 5.05 30.69 0.15 -1.52 16 28 C 0.11 1.70 6.43 86.38 0.56 2.25 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 33 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 34 H 0.12 1.30 7.93 -2.39 -0.02 1.28 16 35 H 0.12 1.38 7.70 -2.39 -0.02 1.37 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.11 0.98 5.93 -2.38 -0.01 0.97 16 38 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.37 6.16 -2.39 -0.01 1.35 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.04 0.97 7.45 -2.39 -0.02 0.95 16 42 H 0.08 1.18 6.40 -2.39 -0.02 1.17 16 43 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.35 10.49 5.84 -89.69 -0.52 9.96 16 45 H 0.06 1.85 8.06 -2.39 -0.02 1.83 16 46 H 0.10 3.07 7.44 -2.39 -0.02 3.06 16 47 H 0.40 19.24 7.90 -92.70 -0.73 18.51 16 48 H 0.28 13.96 8.31 -92.70 -0.77 13.19 16 49 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 50 H 0.09 1.13 6.36 -2.39 -0.02 1.12 16 51 H 0.08 1.47 7.01 -2.39 -0.02 1.45 16 52 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -72.05 410.40 0.36 -71.68 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: -0.33 Total: 40.08 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: 7.06 Total: 16.87 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -6.71 Total: -115.25 kcal Atomic # 8 Polarization: -56.41 SS G_CDS: -1.69 Total: -58.10 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -72.05 0.36 -71.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731992389.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.502 kcal (2) G-P(sol) polarization free energy of solvation -72.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds