Wall clock time and date at job start Wed Apr 1 2020 01:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47298 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99449 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00365 * 179.97438 * 5 4 3 8 8 C 1.46920 * 120.62996 * 359.72435 * 7 5 4 9 9 C 1.52757 * 109.01230 * 233.58214 * 8 7 5 10 10 C 1.53047 * 109.38188 * 305.59127 * 9 8 7 11 11 C 1.53002 * 109.44821 * 181.25230 * 10 9 8 12 12 H 1.09006 * 109.47118 * 299.93874 * 11 10 9 13 13 C 1.52996 * 109.47197 * 179.97438 * 11 10 9 14 14 N 1.46904 * 109.47171 * 59.93594 * 11 10 9 15 15 C 1.46898 * 110.99639 * 204.99982 * 14 11 10 16 16 C 1.50706 * 109.46909 * 180.02562 * 15 14 11 17 17 O 1.21290 * 120.00084 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99773 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99661 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00026 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99788 * 180.02562 * 19 18 16 22 22 N 1.31419 * 120.00148 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47055 * 89.99568 * 23 21 19 25 25 H 1.48492 * 109.47288 * 209.99997 * 23 21 19 26 26 H 1.48506 * 109.46581 * 329.99986 * 23 21 19 27 27 C 1.53038 * 109.53726 * 61.23536 * 10 9 8 28 28 C 1.46929 * 120.63300 * 180.02562 * 7 5 4 29 29 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 31 31 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 32 32 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 33 33 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 34 34 H 1.08997 * 109.47286 * 300.00017 * 4 3 2 35 35 H 1.09008 * 109.47201 * 60.00236 * 4 3 2 36 36 H 1.09001 * 109.59172 * 353.41901 * 8 7 5 37 37 H 1.09001 * 109.59108 * 113.84197 * 8 7 5 38 38 H 1.08996 * 109.57104 * 185.55039 * 9 8 7 39 39 H 1.09000 * 109.36010 * 65.49482 * 9 8 7 40 40 H 1.08995 * 109.45613 * 301.21520 * 10 9 8 41 41 H 1.08993 * 109.47287 * 300.00394 * 13 11 10 42 42 H 1.09008 * 109.47239 * 59.99729 * 13 11 10 43 43 H 1.08999 * 109.47525 * 179.97438 * 13 11 10 44 44 H 1.00894 * 110.99842 * 328.94919 * 14 11 10 45 45 H 1.09002 * 109.47631 * 299.99831 * 15 14 11 46 46 H 1.09000 * 109.47698 * 59.99977 * 15 14 11 47 47 H 0.96997 * 120.00184 * 0.02562 * 18 16 15 48 48 H 0.97001 * 120.00004 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.49201 * 178.68132 * 27 10 9 50 50 H 1.09001 * 109.52476 * 58.60760 * 27 10 9 51 51 H 1.08997 * 109.58666 * 246.15796 * 28 7 5 52 52 H 1.09003 * 109.58700 * 6.44018 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0000 6 8 3.4355 3.5425 -0.0004 7 7 5.4888 2.7023 0.0009 8 6 6.3654 1.5233 0.0087 9 6 7.3489 1.6420 1.1715 10 6 8.0911 2.9770 1.0747 11 6 9.0988 3.0839 2.2210 12 1 8.5723 3.0300 3.1739 13 6 9.8415 4.4180 2.1243 14 7 10.0622 1.9786 2.1307 15 6 10.6437 1.6784 3.4459 16 6 11.6252 0.5425 3.3137 17 8 11.8208 0.0328 2.2305 18 7 12.2857 0.0929 4.3991 19 6 13.1783 -0.9408 4.2789 20 1 13.3524 -1.3946 3.3144 21 6 13.8589 -1.4046 5.3979 22 7 13.6466 -0.8528 6.5716 23 14 15.0755 -2.8126 5.2342 24 1 16.4267 -2.2682 4.9453 25 1 15.1134 -3.5842 6.5024 26 1 14.6537 -3.7047 4.1244 27 6 7.0875 4.1285 1.1689 28 6 6.1011 4.0379 0.0009 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 3.8567 0.6439 0.8908 35 1 3.8575 0.6436 -0.8892 36 1 5.7647 0.6220 0.1306 37 1 6.9178 1.4724 -0.9296 38 1 8.0665 0.8228 1.1278 39 1 6.8020 1.5974 2.1133 40 1 8.6177 3.0313 0.1219 41 1 10.3679 4.4726 1.1715 42 1 9.1262 5.2378 2.1917 43 1 10.5591 4.4944 2.9412 44 1 9.6344 1.1580 1.7286 45 1 11.1588 2.5608 3.8255 46 1 9.8505 1.3950 4.1377 47 1 12.1291 0.5002 5.2653 48 1 14.1220 -1.1764 7.3528 49 1 7.6191 5.0790 1.1235 50 1 6.5430 4.0610 2.1108 51 1 6.6314 4.1967 -0.9380 52 1 5.3257 4.7954 0.1152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731992390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:24 Heat of formation + Delta-G solvation = -126.097976 kcal Electronic energy + Delta-G solvation = -29893.942800 eV Core-core repulsion = 25700.086612 eV Total energy + Delta-G solvation = -4193.856188 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.69409 -38.95974 -38.21071 -37.84682 -36.01672 -33.97127 -33.15553 -32.17748 -31.32454 -31.20740 -29.75661 -27.08395 -26.71621 -25.62001 -24.41492 -23.64167 -23.03767 -21.47245 -20.20349 -19.37940 -19.10532 -17.95777 -17.77851 -16.75086 -16.57500 -16.33879 -15.89068 -15.64631 -15.30969 -15.23053 -14.88590 -14.57167 -14.40692 -14.25905 -14.06483 -13.85783 -13.69278 -13.49129 -13.16902 -12.91806 -12.69450 -12.52688 -12.28872 -12.20095 -11.89916 -11.85177 -11.72185 -11.58570 -11.54600 -11.49597 -11.33104 -11.05893 -10.72563 -10.63285 -10.51486 -10.40114 -10.22143 -10.09750 -10.07689 -9.51529 -8.98321 -8.44342 -8.05997 -7.96246 -6.42302 -3.83209 2.26876 2.51806 3.17353 3.25985 3.31637 3.40599 3.90342 4.06404 4.22311 4.27832 4.38280 4.49092 4.58680 4.61253 4.73442 4.79007 4.93412 4.95907 4.96963 5.01767 5.08905 5.16390 5.19904 5.24763 5.28108 5.28671 5.36542 5.39971 5.41787 5.45318 5.54084 5.62711 5.66368 5.72770 5.74593 5.82270 5.90817 5.99206 6.03385 6.17422 6.19678 6.26957 6.39843 6.71296 7.02788 7.26598 7.54537 7.69598 7.80021 8.05882 8.60664 9.17256 9.53882 10.05222 10.75395 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.001921 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.987572 B =14568.823497 C =16080.648987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.395 6.395 3 C 0.077 3.923 4 C -0.141 4.141 5 C 0.521 3.479 6 O -0.547 6.547 7 N -0.609 5.609 8 C 0.106 3.894 9 C -0.139 4.139 10 C -0.088 4.088 11 C 0.088 3.912 12 H 0.040 0.960 13 C -0.142 4.142 14 N -0.665 5.665 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.128 4.128 28 C 0.111 3.889 29 H 0.087 0.913 30 H 0.042 0.958 31 H 0.042 0.958 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.104 0.896 35 H 0.103 0.897 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.062 0.938 42 H 0.054 0.946 43 H 0.054 0.946 44 H 0.348 0.652 45 H 0.085 0.915 46 H 0.042 0.958 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.082 0.918 50 H 0.066 0.934 51 H 0.069 0.931 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.670 8.276 -10.549 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.314 6.314 3 C 0.000 4.000 4 C -0.181 4.181 5 C 0.310 3.690 6 O -0.425 6.425 7 N -0.342 5.342 8 C -0.016 4.016 9 C -0.177 4.177 10 C -0.107 4.107 11 C -0.022 4.022 12 H 0.058 0.942 13 C -0.200 4.200 14 N -0.300 5.300 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.468 6.468 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.167 4.167 28 C -0.011 4.011 29 H 0.106 0.894 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.106 0.894 37 H 0.094 0.906 38 H 0.103 0.897 39 H 0.086 0.914 40 H 0.102 0.898 41 H 0.081 0.919 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.170 0.830 45 H 0.103 0.897 46 H 0.059 0.941 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.101 0.899 50 H 0.085 0.915 51 H 0.087 0.913 52 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.192 8.622 -11.288 25.512 hybrid contribution -0.191 -0.727 1.159 1.381 sum -21.383 7.896 -10.129 24.943 Atomic orbital electron populations 1.22742 0.80508 1.02844 1.00196 1.87813 1.20138 1.27913 1.95564 1.22157 0.91875 0.84289 1.01715 1.21520 0.95458 0.95330 1.05777 1.20382 0.81908 0.91068 0.75673 1.90698 1.60502 1.40888 1.50434 1.48126 1.05278 1.07840 1.72977 1.21736 0.92752 0.87612 0.99522 1.21999 0.98382 0.98684 0.98670 1.21297 0.95024 0.94171 1.00166 1.21529 0.91271 0.92857 0.96510 0.94179 1.21855 1.00007 0.95298 1.02806 1.60188 1.36185 1.10741 1.22877 1.21712 0.97261 0.98726 0.90491 1.19827 0.85576 0.86629 0.85332 1.90515 1.68410 1.61008 1.26874 1.41873 1.37369 1.31932 1.08893 1.19702 1.16951 1.09866 0.96363 0.87918 1.25267 0.98800 0.99211 0.94701 1.69616 1.43054 1.42444 0.99205 0.85856 0.80236 0.80538 0.77645 1.20392 1.20953 1.19427 1.22005 0.96698 0.99308 0.98662 1.21627 0.96593 0.84207 0.98643 0.89444 0.93911 0.93957 0.92428 0.92414 0.87815 0.87879 0.89358 0.90615 0.89663 0.91399 0.89773 0.91902 0.92690 0.92665 0.83007 0.89701 0.94053 0.77482 0.91883 0.89928 0.91519 0.91282 0.88984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.40 -3.63 10.70 -35.23 -0.38 -4.01 16 3 C 0.08 0.67 5.23 37.16 0.19 0.86 16 4 C -0.14 -1.10 4.42 -27.88 -0.12 -1.23 16 5 C 0.52 5.23 7.70 -10.99 -0.08 5.14 16 6 O -0.55 -7.26 15.39 5.55 0.09 -7.17 16 7 N -0.61 -5.31 2.98 -173.06 -0.52 -5.83 16 8 C 0.11 0.78 6.31 -3.94 -0.02 0.75 16 9 C -0.14 -1.21 5.14 -26.83 -0.14 -1.35 16 10 C -0.09 -0.81 1.88 -90.57 -0.17 -0.98 16 11 C 0.09 1.02 2.23 -67.71 -0.15 0.86 16 12 H 0.04 0.47 7.80 -51.93 -0.40 0.06 16 13 C -0.14 -1.55 9.06 37.16 0.34 -1.21 16 14 N -0.66 -10.19 5.93 -107.98 -0.64 -10.83 16 15 C 0.05 0.88 5.97 -4.97 -0.03 0.85 16 16 C 0.44 10.29 7.82 -10.98 -0.09 10.20 16 17 O -0.58 -15.62 15.78 5.55 0.09 -15.54 16 18 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 19 C -0.30 -8.31 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.46 13.05 55.50 0.72 -23.73 16 23 Si 0.93 20.96 29.55 -169.99 -5.02 15.94 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 27 C -0.13 -1.04 5.04 -26.64 -0.13 -1.17 16 28 C 0.11 0.94 6.43 -3.73 -0.02 0.92 16 29 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 33 H 0.06 0.52 8.10 -51.93 -0.42 0.10 16 34 H 0.10 0.72 7.68 -51.93 -0.40 0.32 16 35 H 0.10 0.67 7.96 -51.92 -0.41 0.26 16 36 H 0.09 0.52 5.94 -51.93 -0.31 0.21 16 37 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.09 0.82 6.16 -51.93 -0.32 0.50 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.48 6.40 -51.92 -0.33 0.15 16 43 H 0.05 0.66 7.46 -51.93 -0.39 0.27 16 44 H 0.35 5.40 5.84 -39.29 -0.23 5.17 16 45 H 0.08 1.39 7.44 -51.93 -0.39 1.00 16 46 H 0.04 0.65 8.06 -51.93 -0.42 0.24 16 47 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 48 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 49 H 0.08 0.60 6.36 -51.93 -0.33 0.27 16 50 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 51 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 52 H 0.09 0.88 7.00 -51.93 -0.36 0.51 16 LS Contribution 410.33 15.07 6.18 6.18 Total: -1.00 -33.27 410.33 -7.87 -41.14 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -8.77 Total: 11.11 kcal Atomic # 6 Polarization: 6.57 SS G_CDS: 0.44 Total: 7.01 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.49 Total: -54.67 kcal Atomic # 8 Polarization: -26.51 SS G_CDS: -0.20 Total: -26.72 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.27 -7.87 -41.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731992390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.958 kcal (2) G-P(sol) polarization free energy of solvation -33.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds