Wall clock time and date at job start Wed Apr 1 2020 01:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42899 * 113.99778 * 2 1 4 4 C 1.52999 * 109.46889 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47298 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99449 * 0.02562 * 5 4 3 7 7 N 1.34771 * 120.00365 * 179.97438 * 5 4 3 8 8 C 1.46920 * 120.62996 * 359.72435 * 7 5 4 9 9 C 1.52757 * 109.01230 * 233.58214 * 8 7 5 10 10 C 1.53047 * 109.38188 * 305.59127 * 9 8 7 11 11 C 1.53002 * 109.44821 * 181.25230 * 10 9 8 12 12 H 1.09006 * 109.47118 * 299.93874 * 11 10 9 13 13 C 1.52996 * 109.47197 * 179.97438 * 11 10 9 14 14 N 1.46904 * 109.47171 * 59.93594 * 11 10 9 15 15 C 1.46898 * 110.99639 * 204.99982 * 14 11 10 16 16 C 1.50706 * 109.46909 * 180.02562 * 15 14 11 17 17 O 1.21290 * 120.00084 * 359.97438 * 16 15 14 18 18 N 1.34776 * 119.99773 * 179.97438 * 16 15 14 19 19 C 1.37104 * 119.99661 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00026 * 0.02562 * 19 18 16 21 21 C 1.38945 * 119.99788 * 180.02562 * 19 18 16 22 22 N 1.31419 * 120.00148 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00160 * 180.02562 * 21 19 18 24 24 H 1.48503 * 109.47055 * 89.99568 * 23 21 19 25 25 H 1.48492 * 109.47288 * 209.99997 * 23 21 19 26 26 H 1.48506 * 109.46581 * 329.99986 * 23 21 19 27 27 C 1.53038 * 109.53726 * 61.23536 * 10 9 8 28 28 C 1.46929 * 120.63300 * 180.02562 * 7 5 4 29 29 H 1.09001 * 109.47103 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47187 * 300.00233 * 1 2 3 31 31 H 1.09001 * 109.46558 * 60.00281 * 1 2 3 32 32 H 1.08997 * 109.47171 * 299.99768 * 3 2 1 33 33 H 1.08997 * 109.47442 * 59.99964 * 3 2 1 34 34 H 1.08997 * 109.47286 * 300.00017 * 4 3 2 35 35 H 1.09008 * 109.47201 * 60.00236 * 4 3 2 36 36 H 1.09001 * 109.59172 * 353.41901 * 8 7 5 37 37 H 1.09001 * 109.59108 * 113.84197 * 8 7 5 38 38 H 1.08996 * 109.57104 * 185.55039 * 9 8 7 39 39 H 1.09000 * 109.36010 * 65.49482 * 9 8 7 40 40 H 1.08995 * 109.45613 * 301.21520 * 10 9 8 41 41 H 1.08993 * 109.47287 * 300.00394 * 13 11 10 42 42 H 1.09008 * 109.47239 * 59.99729 * 13 11 10 43 43 H 1.08999 * 109.47525 * 179.97438 * 13 11 10 44 44 H 1.00894 * 110.99842 * 328.94919 * 14 11 10 45 45 H 1.09002 * 109.47631 * 299.99831 * 15 14 11 46 46 H 1.09000 * 109.47698 * 59.99977 * 15 14 11 47 47 H 0.96997 * 120.00184 * 0.02562 * 18 16 15 48 48 H 0.97001 * 120.00004 * 180.02562 * 22 21 19 49 49 H 1.09003 * 109.49201 * 178.68132 * 27 10 9 50 50 H 1.09001 * 109.52476 * 58.60760 * 27 10 9 51 51 H 1.08997 * 109.58666 * 246.15796 * 28 7 5 52 52 H 1.09003 * 109.58700 * 6.44018 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1484 2.5614 0.0000 6 8 3.4355 3.5425 -0.0004 7 7 5.4888 2.7023 0.0009 8 6 6.3654 1.5233 0.0087 9 6 7.3489 1.6420 1.1715 10 6 8.0911 2.9770 1.0747 11 6 9.0988 3.0839 2.2210 12 1 8.5723 3.0300 3.1739 13 6 9.8415 4.4180 2.1243 14 7 10.0622 1.9786 2.1307 15 6 10.6437 1.6784 3.4459 16 6 11.6252 0.5425 3.3137 17 8 11.8208 0.0328 2.2305 18 7 12.2857 0.0929 4.3991 19 6 13.1783 -0.9408 4.2789 20 1 13.3524 -1.3946 3.3144 21 6 13.8589 -1.4046 5.3979 22 7 13.6466 -0.8528 6.5716 23 14 15.0755 -2.8126 5.2342 24 1 16.4267 -2.2682 4.9453 25 1 15.1134 -3.5842 6.5024 26 1 14.6537 -3.7047 4.1244 27 6 7.0875 4.1285 1.1689 28 6 6.1011 4.0379 0.0009 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 1.6886 1.8464 -0.8900 33 1 1.6886 1.8464 0.8899 34 1 3.8567 0.6439 0.8908 35 1 3.8575 0.6436 -0.8892 36 1 5.7647 0.6220 0.1306 37 1 6.9178 1.4724 -0.9296 38 1 8.0665 0.8228 1.1278 39 1 6.8020 1.5974 2.1133 40 1 8.6177 3.0313 0.1219 41 1 10.3679 4.4726 1.1715 42 1 9.1262 5.2378 2.1917 43 1 10.5591 4.4944 2.9412 44 1 9.6344 1.1580 1.7286 45 1 11.1588 2.5608 3.8255 46 1 9.8505 1.3950 4.1377 47 1 12.1291 0.5002 5.2653 48 1 14.1220 -1.1764 7.3528 49 1 7.6191 5.0790 1.1235 50 1 6.5430 4.0610 2.1108 51 1 6.6314 4.1967 -0.9380 52 1 5.3257 4.7954 0.1152 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731992390.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:23 Heat of formation + Delta-G solvation = -150.239612 kcal Electronic energy + Delta-G solvation = -29894.989660 eV Core-core repulsion = 25700.086612 eV Total energy + Delta-G solvation = -4194.903048 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.44400 -40.26571 -39.42094 -38.67057 -37.03777 -35.91984 -34.10260 -33.26960 -32.90723 -32.01981 -30.71632 -28.16302 -27.64264 -26.63080 -25.72842 -24.62700 -23.73620 -22.30085 -21.20921 -20.92246 -19.98961 -19.83786 -18.57216 -17.86629 -17.39834 -17.25964 -16.97667 -16.55983 -16.47995 -16.20738 -16.10579 -15.76995 -15.52549 -15.39669 -15.17326 -14.99645 -14.55787 -14.38861 -14.21017 -14.03650 -13.68041 -13.53823 -13.42362 -13.27151 -13.03944 -12.93194 -12.83332 -12.67540 -12.44640 -12.41207 -12.33970 -12.19422 -12.11626 -12.07993 -11.54378 -11.49090 -11.42265 -11.35637 -10.86668 -10.70233 -10.31847 -10.00860 -9.70503 -9.28358 -8.45992 -5.94771 1.38691 1.42520 1.51655 1.55184 1.84880 2.05955 2.29673 2.80129 2.93382 3.21366 3.53393 3.55782 3.70115 3.72936 3.88363 3.98560 4.05253 4.11691 4.28172 4.34087 4.36331 4.40246 4.45982 4.46846 4.49777 4.50050 4.52687 4.61912 4.65744 4.72176 4.77176 4.78947 4.83049 4.84240 4.91088 4.93068 5.00596 5.03588 5.13452 5.17644 5.40485 5.41671 5.47725 5.56215 5.93808 6.11837 6.16669 6.32410 6.50866 6.60703 7.05950 7.13197 7.57039 8.11953 8.71346 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.001921 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.987572 B =14568.823497 C =16080.648987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.411 6.411 3 C 0.079 3.921 4 C -0.136 4.136 5 C 0.518 3.482 6 O -0.585 6.585 7 N -0.606 5.606 8 C 0.108 3.892 9 C -0.136 4.136 10 C -0.080 4.080 11 C 0.090 3.910 12 H 0.044 0.956 13 C -0.140 4.140 14 N -0.677 5.677 15 C 0.066 3.934 16 C 0.439 3.561 17 O -0.621 6.621 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.080 0.920 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.993 3.007 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.272 1.272 27 C -0.118 4.118 28 C 0.110 3.890 29 H 0.101 0.899 30 H 0.047 0.953 31 H 0.049 0.951 32 H 0.052 0.948 33 H 0.049 0.951 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.105 0.895 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.079 0.921 43 H 0.043 0.957 44 H 0.345 0.655 45 H 0.098 0.902 46 H 0.062 0.938 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.095 0.905 50 H 0.060 0.940 51 H 0.080 0.920 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.066 8.194 -10.605 25.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.331 6.331 3 C 0.002 3.998 4 C -0.175 4.175 5 C 0.308 3.692 6 O -0.466 6.466 7 N -0.338 5.338 8 C -0.014 4.014 9 C -0.175 4.175 10 C -0.099 4.099 11 C -0.020 4.020 12 H 0.062 0.938 13 C -0.198 4.198 14 N -0.312 5.312 15 C -0.067 4.067 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.098 0.902 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.817 3.183 24 H -0.197 1.197 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.156 4.156 28 C -0.012 4.012 29 H 0.120 0.880 30 H 0.066 0.934 31 H 0.068 0.932 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.133 0.867 35 H 0.138 0.862 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.098 0.902 43 H 0.062 0.938 44 H 0.167 0.833 45 H 0.116 0.884 46 H 0.080 0.920 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.113 0.887 50 H 0.079 0.921 51 H 0.099 0.901 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.587 8.555 -11.330 25.837 hybrid contribution -0.104 -0.663 1.149 1.331 sum -21.691 7.892 -10.181 25.228 Atomic orbital electron populations 1.22941 0.79235 1.04031 1.00816 1.87781 1.21658 1.28007 1.95633 1.22103 0.92541 0.84151 1.01053 1.21507 0.94742 0.94179 1.07071 1.20743 0.82083 0.91412 0.74969 1.90681 1.61380 1.42211 1.52351 1.48205 1.05140 1.08401 1.72094 1.21831 0.92558 0.87687 0.99353 1.21952 0.98344 0.98020 0.99175 1.21223 0.94691 0.94987 0.99036 1.21620 0.91042 0.91645 0.97653 0.93777 1.21862 1.00284 0.95739 1.01936 1.60210 1.37772 1.11593 1.21670 1.21550 0.96403 0.96496 0.92233 1.20867 0.85309 0.87050 0.84144 1.90483 1.69582 1.62484 1.28203 1.41950 1.37668 1.31908 1.09612 1.19675 1.19006 1.11591 0.95985 0.90209 1.26049 0.99946 1.01242 0.94128 1.69678 1.43572 1.43285 0.99648 0.84925 0.77969 0.77551 0.77881 1.19733 1.19606 1.19647 1.21917 0.96193 0.99333 0.98199 1.21651 0.96293 0.83925 0.99316 0.88023 0.93433 0.93237 0.92961 0.93296 0.86676 0.86206 0.87643 0.89627 0.90543 0.91687 0.89994 0.92604 0.90244 0.93773 0.83269 0.88391 0.92001 0.77065 0.91342 0.88701 0.92100 0.90146 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 113.37 1.25 1.55 16 2 O -0.41 -7.15 10.70 -148.98 -1.59 -8.74 16 3 C 0.08 1.32 5.23 71.98 0.38 1.70 16 4 C -0.14 -1.92 4.42 29.85 0.13 -1.79 16 5 C 0.52 9.89 7.70 87.66 0.67 10.56 16 6 O -0.59 -15.45 15.39 -3.04 -0.05 -15.50 16 7 N -0.61 -9.64 2.98 -819.84 -2.44 -12.08 16 8 C 0.11 1.36 6.31 86.22 0.54 1.90 16 9 C -0.14 -2.16 5.14 30.53 0.16 -2.00 16 10 C -0.08 -1.34 1.88 -10.76 -0.02 -1.36 16 11 C 0.09 1.90 2.23 44.91 0.10 2.00 16 12 H 0.04 0.93 7.80 -2.38 -0.02 0.91 16 13 C -0.14 -2.80 9.06 71.98 0.65 -2.14 16 14 N -0.68 -20.05 5.93 -495.55 -2.94 -22.99 16 15 C 0.07 2.21 5.97 85.56 0.51 2.72 16 16 C 0.44 20.61 7.82 87.66 0.69 21.29 16 17 O -0.62 -33.80 15.78 -3.06 -0.05 -33.85 16 18 N -0.57 -29.30 5.29 -306.98 -1.62 -30.93 16 19 C -0.33 -18.82 9.68 84.04 0.81 -18.00 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 22 N -0.92 -49.54 13.05 21.66 0.28 -49.26 16 23 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 24 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 25 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 26 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 27 C -0.12 -1.68 5.04 30.66 0.15 -1.53 16 28 C 0.11 1.70 6.43 86.35 0.56 2.25 16 29 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.49 8.14 -2.39 -0.02 0.48 16 32 H 0.05 0.91 8.10 -2.39 -0.02 0.89 16 33 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 34 H 0.12 1.38 7.68 -2.39 -0.02 1.37 16 35 H 0.12 1.30 7.96 -2.38 -0.02 1.28 16 36 H 0.11 0.99 5.94 -2.39 -0.01 0.97 16 37 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.38 6.16 -2.39 -0.01 1.37 16 39 H 0.06 1.07 8.14 -2.39 -0.02 1.06 16 40 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.08 1.18 6.40 -2.38 -0.02 1.17 16 43 H 0.04 0.97 7.46 -2.39 -0.02 0.95 16 44 H 0.35 10.48 5.84 -89.70 -0.52 9.95 16 45 H 0.10 3.07 7.44 -2.39 -0.02 3.06 16 46 H 0.06 1.85 8.06 -2.39 -0.02 1.83 16 47 H 0.40 19.24 7.90 -92.71 -0.73 18.51 16 48 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 49 H 0.09 1.13 6.36 -2.39 -0.02 1.12 16 50 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 52 H 0.08 1.47 7.00 -2.39 -0.02 1.46 16 Total: -1.00 -72.01 410.33 0.34 -71.67 By element: Atomic # 1 Polarization: 40.42 SS G_CDS: -0.33 Total: 40.09 kcal Atomic # 6 Polarization: 9.82 SS G_CDS: 7.05 Total: 16.87 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -6.72 Total: -115.25 kcal Atomic # 8 Polarization: -56.40 SS G_CDS: -1.69 Total: -58.09 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -72.01 0.34 -71.67 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731992390.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.565 kcal (2) G-P(sol) polarization free energy of solvation -72.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds