Wall clock time and date at job start Wed Apr 1 2020 01:40:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42897 * 113.99769 * 2 1 4 4 C 1.50706 * 109.47067 * 179.97438 * 3 2 1 5 5 O 1.21282 * 119.99828 * 359.97438 * 4 3 2 6 6 N 1.34775 * 119.99770 * 179.97438 * 4 3 2 7 7 C 1.46496 * 120.00303 * 0.02562 * 6 4 3 8 8 C 1.46506 * 119.99731 * 179.97438 * 6 4 3 9 9 C 1.50704 * 109.46499 * 90.00201 * 8 6 4 10 10 O 1.21277 * 120.00525 * 359.97438 * 9 8 6 11 11 N 1.34781 * 119.99936 * 180.02562 * 9 8 6 12 12 C 1.46925 * 120.63333 * 180.02562 * 11 9 8 13 13 C 1.53189 * 108.77251 * 233.58411 * 12 11 9 14 14 C 1.53049 * 109.31630 * 305.36250 * 13 12 11 15 15 C 1.52992 * 109.46109 * 181.38860 * 14 13 12 16 16 H 1.09002 * 109.47103 * 299.97040 * 15 14 13 17 17 C 1.52997 * 109.47482 * 59.97287 * 15 14 13 18 18 N 1.46497 * 109.47081 * 179.97438 * 15 14 13 19 19 C 1.36940 * 120.00565 * 154.99853 * 18 15 14 20 20 H 1.08004 * 119.99402 * 359.97438 * 19 18 15 21 21 C 1.38815 * 120.00150 * 179.97438 * 19 18 15 22 22 N 1.31618 * 120.00111 * 359.97438 * 21 19 18 23 23 Si 1.86800 * 119.99847 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47395 * 89.99619 * 23 21 19 25 25 H 1.48493 * 109.46907 * 209.99948 * 23 21 19 26 26 H 1.48506 * 109.46912 * 329.99546 * 23 21 19 27 27 C 1.53042 * 109.52476 * 61.37087 * 14 13 12 28 28 C 1.46935 * 120.62616 * 359.97292 * 11 9 8 29 29 H 1.09000 * 109.47178 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47501 * 300.00196 * 1 2 3 31 31 H 1.08997 * 109.47071 * 60.00351 * 1 2 3 32 32 H 1.09002 * 109.47589 * 59.99835 * 3 2 1 33 33 H 1.09007 * 109.47236 * 299.99527 * 3 2 1 34 34 H 1.08998 * 109.46998 * 269.99539 * 7 6 4 35 35 H 1.08998 * 109.47243 * 29.99513 * 7 6 4 36 36 H 1.09000 * 109.47422 * 149.99831 * 7 6 4 37 37 H 1.08994 * 109.47319 * 330.00635 * 8 6 4 38 38 H 1.08997 * 109.47066 * 209.99845 * 8 6 4 39 39 H 1.08995 * 109.58787 * 113.79548 * 12 11 9 40 40 H 1.08998 * 109.58311 * 353.37209 * 12 11 9 41 41 H 1.08997 * 109.49975 * 185.41372 * 13 12 11 42 42 H 1.09004 * 109.49800 * 65.31486 * 13 12 11 43 43 H 1.09002 * 109.45741 * 301.36490 * 14 13 12 44 44 H 1.09002 * 109.47153 * 59.99783 * 17 15 14 45 45 H 1.09001 * 109.46832 * 299.99974 * 17 15 14 46 46 H 1.09004 * 109.47261 * 179.97438 * 17 15 14 47 47 H 0.97006 * 119.99921 * 334.99446 * 18 15 14 48 48 H 0.96997 * 119.99796 * 179.97438 * 22 21 19 49 49 H 1.08999 * 109.49617 * 58.58251 * 27 14 13 50 50 H 1.08997 * 109.50004 * 178.67694 * 27 14 13 51 51 H 1.08993 * 109.58567 * 246.20092 * 28 11 9 52 52 H 1.08991 * 109.58764 * 6.49138 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 8 4.0341 0.0916 0.0015 6 7 4.2764 2.2969 0.0002 7 6 3.6463 3.6194 -0.0003 8 6 5.7368 2.1812 0.0014 9 6 6.2385 2.1404 -1.4191 10 8 5.4535 2.2014 -2.3415 11 7 7.5596 2.0351 -1.6644 12 6 8.0640 1.9946 -3.0438 13 6 8.9463 0.7534 -3.2099 14 6 10.0411 0.7637 -2.1404 15 6 10.9452 -0.4567 -2.3247 16 1 10.3521 -1.3661 -2.2283 17 6 11.5870 -0.4110 -3.7128 18 7 11.9935 -0.4467 -1.3014 19 6 12.5896 -1.6191 -0.9202 20 1 12.2865 -2.5513 -1.3737 21 6 13.5834 -1.6095 0.0490 22 7 13.9530 -0.4734 0.6012 23 14 14.3969 -3.2088 0.5684 24 1 15.5819 -3.4630 -0.2897 25 1 14.8251 -3.1085 1.9867 26 1 13.4302 -4.3265 0.4211 27 6 9.3998 0.7182 -0.7515 28 6 8.5229 1.9597 -0.5574 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8901 34 1 3.4902 3.9471 -1.0281 35 1 2.6866 3.5649 0.5135 36 1 4.2935 4.3304 0.5133 37 1 6.0284 1.2658 0.5161 38 1 6.1689 3.0402 0.5148 39 1 8.6518 2.8903 -3.2443 40 1 7.2254 1.9424 -3.7381 41 1 9.4041 0.7621 -4.1990 42 1 8.3371 -0.1436 -3.0982 43 1 10.6343 1.6731 -2.2367 44 1 12.1801 0.4984 -3.8092 45 1 10.8069 -0.4185 -4.4741 46 1 12.2315 -1.2803 -3.8439 47 1 12.2656 0.3905 -0.8939 48 1 14.6472 -0.4668 1.2787 49 1 8.7863 -0.1785 -0.6633 50 1 10.1802 0.7018 0.0092 51 1 9.1480 2.8525 -0.5557 52 1 7.9870 1.8869 0.3889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731996117.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:41 Heat of formation + Delta-G solvation = -120.314837 kcal Electronic energy + Delta-G solvation = -30841.669847 eV Core-core repulsion = 26648.064434 eV Total energy + Delta-G solvation = -4193.605412 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.65926 -40.68626 -39.19532 -38.40394 -36.92354 -36.49115 -34.66577 -32.77106 -32.08915 -31.08339 -29.97132 -28.85954 -27.41015 -26.74147 -26.28260 -25.33068 -23.92942 -22.59093 -21.29769 -20.75657 -19.91610 -19.15625 -18.52413 -18.39201 -17.77666 -17.31429 -16.97086 -16.77900 -16.54010 -16.12823 -15.78547 -15.57841 -15.48703 -15.36618 -15.00465 -14.83841 -14.49626 -14.22578 -14.07425 -13.99687 -13.80952 -13.61740 -13.45934 -13.32124 -13.19338 -13.00218 -12.87577 -12.84905 -12.76547 -12.34925 -12.31018 -12.19078 -12.12011 -11.83898 -11.53020 -11.38649 -11.20591 -11.10311 -10.95090 -10.87092 -10.78158 -9.78253 -9.65994 -8.94505 -7.91277 -5.16989 1.33461 1.47294 1.47308 1.54060 1.55667 1.65117 2.11984 2.57503 2.95754 3.42057 3.46227 3.53245 3.75978 3.81439 3.89879 4.03316 4.12044 4.14747 4.20427 4.24397 4.30147 4.31487 4.40443 4.45251 4.48471 4.54756 4.56080 4.59135 4.69200 4.78490 4.79139 4.85590 4.87032 4.93178 4.94011 5.04288 5.05612 5.13183 5.21877 5.27751 5.37839 5.47915 5.52903 5.61340 5.68233 5.97759 6.26581 6.32094 6.35824 7.01381 7.11437 7.38792 8.15907 8.40603 9.31744 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014276 B = 0.002306 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1960.838218 B =12139.334035 C =12941.359027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.051 3.949 4 C 0.505 3.495 5 O -0.577 6.577 6 N -0.598 5.598 7 C 0.069 3.931 8 C 0.096 3.904 9 C 0.495 3.505 10 O -0.579 6.579 11 N -0.606 5.606 12 C 0.116 3.884 13 C -0.119 4.119 14 C -0.078 4.078 15 C 0.171 3.829 16 H 0.027 0.973 17 C -0.157 4.157 18 N -0.729 5.729 19 C -0.232 4.232 20 H 0.065 0.935 21 C -0.072 4.072 22 N -0.964 5.964 23 Si 0.963 3.037 24 H -0.290 1.290 25 H -0.294 1.294 26 H -0.276 1.276 27 C -0.120 4.120 28 C 0.112 3.888 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.101 0.899 37 H 0.102 0.898 38 H 0.154 0.846 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.093 0.907 42 H 0.046 0.954 43 H 0.076 0.924 44 H 0.047 0.953 45 H 0.070 0.930 46 H 0.029 0.971 47 H 0.375 0.625 48 H 0.250 0.750 49 H 0.042 0.958 50 H 0.068 0.932 51 H 0.094 0.906 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.017 14.916 -0.904 30.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C -0.028 4.028 4 C 0.294 3.706 5 O -0.456 6.456 6 N -0.331 5.331 7 C -0.072 4.072 8 C -0.031 4.031 9 C 0.283 3.717 10 O -0.459 6.459 11 N -0.339 5.339 12 C -0.007 4.007 13 C -0.157 4.157 14 C -0.097 4.097 15 C 0.063 3.937 16 H 0.045 0.955 17 C -0.217 4.217 18 N -0.369 5.369 19 C -0.364 4.364 20 H 0.083 0.917 21 C -0.265 4.265 22 N -0.616 5.616 23 Si 0.793 3.207 24 H -0.217 1.217 25 H -0.221 1.221 26 H -0.202 1.202 27 C -0.158 4.158 28 C -0.010 4.010 29 H 0.110 0.890 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.172 0.828 39 H 0.106 0.894 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.065 0.935 43 H 0.095 0.905 44 H 0.066 0.934 45 H 0.089 0.911 46 H 0.048 0.952 47 H 0.208 0.792 48 H 0.059 0.941 49 H 0.061 0.939 50 H 0.087 0.913 51 H 0.112 0.888 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -26.048 14.028 -1.364 29.616 hybrid contribution 1.021 -0.897 0.296 1.391 sum -25.027 13.131 -1.068 28.283 Atomic orbital electron populations 1.23043 0.78088 1.04155 1.01805 1.87978 1.22389 1.26969 1.95790 1.22408 0.88603 0.86694 1.05136 1.21110 0.90694 0.83707 0.75118 1.90724 1.75739 1.28640 1.50488 1.47519 1.05090 1.07771 1.72745 1.22224 1.00370 0.81484 1.03090 1.21535 0.81437 1.07055 0.93042 1.21632 0.81902 0.75280 0.92839 1.90634 1.55727 1.52101 1.47454 1.48278 1.05810 1.71588 1.08242 1.21607 0.97819 0.98550 0.82677 1.21924 0.96271 0.97614 0.99911 1.21236 0.95432 0.98313 0.94728 1.20428 0.88777 0.95987 0.88506 0.95535 1.22351 1.00443 1.00609 0.98254 1.42515 1.42880 1.06168 1.45375 1.19510 1.13406 0.87999 1.15522 0.91668 1.25385 1.01074 0.99494 1.00524 1.69777 1.34384 1.25675 1.31715 0.85292 0.78489 0.80096 0.76825 1.21718 1.22103 1.20154 1.21787 0.98649 0.97525 0.97883 1.21953 0.91147 0.98694 0.89209 0.88981 0.91601 0.92369 0.86280 0.88061 0.92471 0.87931 0.88063 0.87961 0.82836 0.89381 0.90484 0.88885 0.93480 0.90541 0.93359 0.91103 0.95212 0.79222 0.94142 0.93926 0.91304 0.88758 0.87954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 11.01 113.37 1.25 1.54 16 2 O -0.41 -9.37 10.24 -129.94 -1.33 -10.70 16 3 C 0.05 0.83 4.97 71.24 0.35 1.18 16 4 C 0.50 12.77 7.75 87.66 0.68 13.45 16 5 O -0.58 -21.50 16.08 16.00 0.26 -21.24 16 6 N -0.60 -11.17 2.36 -851.13 -2.01 -13.18 16 7 C 0.07 0.56 10.29 127.77 1.31 1.88 16 8 C 0.10 1.86 4.28 85.63 0.37 2.22 16 9 C 0.50 12.99 7.77 87.66 0.68 13.67 16 10 O -0.58 -19.29 15.84 -3.02 -0.05 -19.33 16 11 N -0.61 -14.60 2.97 -818.83 -2.43 -17.03 16 12 C 0.12 2.76 6.43 86.36 0.56 3.32 16 13 C -0.12 -3.11 5.04 30.67 0.15 -2.95 16 14 C -0.08 -2.36 1.79 -10.77 -0.02 -2.38 16 15 C 0.17 6.65 2.47 44.99 0.11 6.77 16 16 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 17 C -0.16 -5.50 9.14 71.98 0.66 -4.84 16 18 N -0.73 -35.61 4.41 -322.95 -1.42 -37.03 16 19 C -0.23 -12.87 9.93 84.03 0.83 -12.03 16 20 H 0.07 3.59 7.83 -2.91 -0.02 3.56 16 21 C -0.07 -4.14 5.50 84.86 0.47 -3.67 16 22 N -0.96 -57.84 13.06 21.65 0.28 -57.56 16 23 Si 0.96 46.66 29.55 68.60 2.03 48.69 16 24 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 25 H -0.29 -14.28 7.11 99.48 0.71 -13.57 16 26 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 27 C -0.12 -3.64 5.22 30.69 0.16 -3.48 16 28 C 0.11 2.40 6.35 86.38 0.55 2.95 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.12 0.92 7.40 -2.39 -0.02 0.91 16 33 H 0.10 1.21 8.11 -2.38 -0.02 1.20 16 34 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.10 0.22 6.44 -2.39 -0.02 0.20 16 36 H 0.10 0.34 7.89 -2.39 -0.02 0.32 16 37 H 0.10 2.35 6.97 -2.39 -0.02 2.33 16 38 H 0.15 1.53 7.69 -2.39 -0.02 1.51 16 39 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.08 2.04 7.00 -2.39 -0.02 2.03 16 41 H 0.09 2.15 6.36 -2.39 -0.02 2.13 16 42 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 45 H 0.07 2.01 6.40 -2.39 -0.02 1.99 16 46 H 0.03 1.14 8.14 -2.38 -0.02 1.12 16 47 H 0.38 19.31 7.58 -92.70 -0.70 18.60 16 48 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 49 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.07 2.45 7.41 -2.39 -0.02 2.43 16 51 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 52 H 0.10 1.75 5.93 -2.39 -0.01 1.73 16 Total: -1.00 -84.80 412.73 3.64 -81.16 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.21 Total: 28.62 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 8.11 Total: 17.62 kcal Atomic # 7 Polarization: -119.22 SS G_CDS: -5.58 Total: -124.80 kcal Atomic # 8 Polarization: -50.16 SS G_CDS: -1.12 Total: -51.28 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.69 kcal Total: -84.80 3.64 -81.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731996117.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.154 kcal (2) G-P(sol) polarization free energy of solvation -84.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds