Wall clock time and date at job start Wed Apr 1 2020 01:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42902 * 113.99729 * 2 1 4 4 C 1.50704 * 109.46820 * 180.02562 * 3 2 1 5 5 O 1.21271 * 120.00125 * 0.02562 * 4 3 2 6 6 N 1.34782 * 119.99618 * 179.97438 * 4 3 2 7 7 C 1.46500 * 120.00236 * 0.02562 * 6 4 3 8 8 C 1.46500 * 119.99741 * 179.97438 * 6 4 3 9 9 C 1.50705 * 109.46662 * 90.00569 * 8 6 4 10 10 O 1.21284 * 120.00096 * 359.97438 * 9 8 6 11 11 N 1.34777 * 119.99969 * 180.02562 * 9 8 6 12 12 C 1.46923 * 120.63030 * 180.02562 * 11 9 8 13 13 C 1.53191 * 108.77292 * 233.62296 * 12 11 9 14 14 C 1.53031 * 109.31433 * 305.36553 * 13 12 11 15 15 C 1.53004 * 109.46199 * 181.38512 * 14 13 12 16 16 H 1.08995 * 109.47216 * 59.99867 * 15 14 13 17 17 C 1.52999 * 109.47083 * 299.99863 * 15 14 13 18 18 N 1.46498 * 109.47065 * 179.97438 * 15 14 13 19 19 C 1.36943 * 119.99752 * 204.72207 * 18 15 14 20 20 H 1.08002 * 119.99793 * 0.27665 * 19 18 15 21 21 C 1.38811 * 120.00012 * 180.27737 * 19 18 15 22 22 N 1.31624 * 119.99698 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00072 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.47159 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47290 * 120.00044 * 23 21 19 26 26 H 1.48503 * 109.47163 * 240.00049 * 23 21 19 27 27 C 1.53038 * 109.54033 * 61.36367 * 14 13 12 28 28 C 1.46922 * 120.62904 * 0.02562 * 11 9 8 29 29 H 1.08992 * 109.47414 * 59.99934 * 1 2 3 30 30 H 1.09000 * 109.46867 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47028 * 299.99821 * 1 2 3 32 32 H 1.08999 * 109.47380 * 59.99936 * 3 2 1 33 33 H 1.09000 * 109.47141 * 300.00084 * 3 2 1 34 34 H 1.09003 * 109.46416 * 269.99609 * 7 6 4 35 35 H 1.09002 * 109.46900 * 29.98967 * 7 6 4 36 36 H 1.08995 * 109.47298 * 149.99886 * 7 6 4 37 37 H 1.08992 * 109.47234 * 330.00827 * 8 6 4 38 38 H 1.09001 * 109.47341 * 210.00131 * 8 6 4 39 39 H 1.09005 * 109.58831 * 113.83815 * 12 11 9 40 40 H 1.09001 * 109.58907 * 353.41020 * 12 11 9 41 41 H 1.09000 * 109.49885 * 185.40858 * 13 12 11 42 42 H 1.09007 * 109.52267 * 65.33343 * 13 12 11 43 43 H 1.09003 * 109.46063 * 301.35614 * 14 13 12 44 44 H 1.08995 * 109.47098 * 300.00077 * 17 15 14 45 45 H 1.09003 * 109.47054 * 59.99725 * 17 15 14 46 46 H 1.08996 * 109.47245 * 179.97438 * 17 15 14 47 47 H 0.97001 * 120.00384 * 25.00562 * 18 15 14 48 48 H 0.96999 * 119.99739 * 180.02562 * 22 21 19 49 49 H 1.09006 * 109.49860 * 58.58550 * 27 14 13 50 50 H 1.08998 * 109.50063 * 178.68763 * 27 14 13 51 51 H 1.09002 * 109.59312 * 246.16097 * 28 11 9 52 52 H 1.08994 * 109.58647 * 6.59357 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 8 4.0341 0.0917 -0.0015 6 7 4.2764 2.2969 -0.0013 7 6 3.6464 3.6195 -0.0008 8 6 5.7369 2.1813 -0.0013 9 6 6.2374 2.1410 -1.4222 10 8 5.4516 2.2024 -2.3440 11 7 7.5583 2.0358 -1.6687 12 6 8.0615 1.9959 -3.0484 13 6 8.9429 0.7542 -3.2161 14 6 10.0384 0.7631 -2.1475 15 6 10.9416 -0.4578 -2.3333 16 1 11.3984 -0.4247 -3.3223 17 6 10.1083 -1.7339 -2.1989 18 7 11.9907 -0.4491 -1.3108 19 6 13.1755 -1.0966 -1.5400 20 1 13.3380 -1.6099 -2.4763 21 6 14.1674 -1.0933 -0.5689 22 7 13.9690 -0.4683 0.5723 23 14 15.7837 -1.9759 -0.8818 24 1 15.7564 -2.5951 -2.2312 25 1 16.9021 -1.0019 -0.8071 26 1 15.9776 -3.0320 0.1441 27 6 9.3985 0.7173 -0.7581 28 6 8.5223 1.9588 -0.5626 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.6886 1.8464 0.8899 33 1 1.6885 1.8464 -0.8900 34 1 3.4894 3.9475 -1.0284 35 1 2.6870 3.5647 0.5137 36 1 4.2939 4.3303 0.5125 37 1 6.0288 1.2657 0.5128 38 1 6.1694 3.0401 0.5121 39 1 8.6499 2.8914 -3.2489 40 1 7.2223 1.9447 -3.7422 41 1 9.3998 0.7633 -4.2056 42 1 8.3335 -0.1427 -3.1049 43 1 10.6322 1.6721 -2.2438 44 1 9.6515 -1.7670 -1.2098 45 1 9.3279 -1.7400 -2.9599 46 1 10.7516 -2.6036 -2.3316 47 1 11.8447 0.0117 -0.4699 48 1 14.6622 -0.4657 1.2507 49 1 8.7845 -0.1791 -0.6697 50 1 10.1797 0.7001 0.0019 51 1 9.1482 2.8512 -0.5604 52 1 7.9871 1.8830 0.3839 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731996122.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:45 Heat of formation + Delta-G solvation = -92.450201 kcal Electronic energy + Delta-G solvation = -30920.502489 eV Core-core repulsion = 26728.105377 eV Total energy + Delta-G solvation = -4192.397111 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.71871 -39.73116 -38.13008 -37.58530 -35.72182 -35.32765 -32.97467 -31.52291 -30.53804 -30.14421 -28.50333 -27.96416 -26.81158 -25.85514 -25.03847 -23.68850 -23.10685 -21.64146 -20.20490 -19.29103 -18.46740 -17.74866 -17.52751 -17.12455 -16.99272 -16.55405 -16.14945 -15.61593 -15.17157 -14.99981 -14.75368 -14.64534 -14.35299 -13.94242 -13.80923 -13.58601 -13.39641 -13.26087 -13.21300 -12.93029 -12.85554 -12.61257 -12.56958 -12.21320 -12.06898 -11.88533 -11.79973 -11.54419 -11.34068 -11.01342 -10.84855 -10.55293 -10.31814 -10.25130 -10.19543 -10.14948 -10.02507 -10.01700 -9.67406 -9.52473 -8.94617 -8.89053 -8.59256 -6.92568 -5.75376 -3.02647 2.17759 2.40517 2.55935 3.05169 3.44059 3.50274 3.51981 3.54079 4.21261 4.39026 4.52758 4.60351 4.70254 4.73932 4.81579 4.86705 4.91938 4.96715 5.04208 5.09824 5.11694 5.17036 5.23411 5.28916 5.31823 5.40897 5.47899 5.57537 5.66147 5.82046 5.84406 5.93781 6.00811 6.01795 6.16601 6.25786 6.31353 6.35901 6.52599 6.56703 6.60750 6.72258 6.80545 6.96424 6.96579 7.20637 7.37191 7.73342 7.87964 8.12051 8.44506 9.55557 10.14264 10.48857 11.47723 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019130 B = 0.002146 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.282952 B =13044.732927 C =13377.729935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.367 6.367 3 C 0.048 3.952 4 C 0.519 3.481 5 O -0.510 6.510 6 N -0.601 5.601 7 C 0.077 3.923 8 C 0.098 3.902 9 C 0.500 3.500 10 O -0.541 6.541 11 N -0.605 5.605 12 C 0.114 3.886 13 C -0.129 4.129 14 C -0.089 4.089 15 C 0.178 3.822 16 H 0.045 0.955 17 C -0.167 4.167 18 N -0.724 5.724 19 C -0.233 4.233 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.935 5.935 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.292 1.292 27 C -0.130 4.130 28 C 0.105 3.895 29 H 0.044 0.956 30 H 0.092 0.908 31 H 0.043 0.957 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.117 0.883 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.087 0.913 41 H 0.073 0.927 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.048 0.952 45 H 0.037 0.963 46 H 0.049 0.951 47 H 0.383 0.617 48 H 0.253 0.747 49 H 0.070 0.930 50 H 0.087 0.913 51 H 0.073 0.927 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.659 11.873 0.027 28.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.284 6.284 3 C -0.032 4.032 4 C 0.306 3.694 5 O -0.383 6.383 6 N -0.337 5.337 7 C -0.066 4.066 8 C -0.028 4.028 9 C 0.287 3.713 10 O -0.419 6.419 11 N -0.340 5.340 12 C -0.008 4.008 13 C -0.167 4.167 14 C -0.108 4.108 15 C 0.068 3.932 16 H 0.063 0.937 17 C -0.227 4.227 18 N -0.367 5.367 19 C -0.364 4.364 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.584 5.584 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.168 4.168 28 C -0.018 4.018 29 H 0.062 0.938 30 H 0.110 0.890 31 H 0.062 0.938 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.135 0.865 38 H 0.128 0.872 39 H 0.084 0.916 40 H 0.105 0.895 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.089 0.911 44 H 0.067 0.933 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.218 0.782 48 H 0.063 0.937 49 H 0.088 0.912 50 H 0.105 0.895 51 H 0.091 0.909 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -25.550 11.039 -0.529 27.838 hybrid contribution 0.833 -0.042 0.196 0.857 sum -24.717 10.997 -0.333 27.055 Atomic orbital electron populations 1.22845 0.80279 1.03447 1.00071 1.88036 1.19850 1.25160 1.95394 1.22244 0.91406 0.87032 1.02480 1.20227 0.88804 0.84052 0.76308 1.90760 1.74342 1.26106 1.47124 1.47311 1.05241 1.06645 1.74476 1.21898 0.98552 0.83453 1.02663 1.21396 0.80659 1.05813 0.94936 1.21059 0.82083 0.76259 0.91920 1.90660 1.54818 1.50258 1.46132 1.48168 1.05658 1.72171 1.07958 1.21618 0.98263 0.98391 0.82574 1.22015 0.97244 0.97821 0.99668 1.21371 0.95520 1.00215 0.93692 1.20194 0.88466 0.91080 0.93464 0.93650 1.22531 0.99344 1.00670 1.00179 1.42496 1.13166 1.64016 1.16974 1.19302 0.91670 1.25339 1.00130 0.91245 1.24712 0.98609 1.01355 0.96499 1.69659 1.34048 1.47900 1.06767 0.86143 0.84059 0.78930 0.77236 1.20636 1.21981 1.21971 1.21997 0.99138 0.96908 0.98776 1.21904 0.91435 0.99814 0.88607 0.93752 0.88986 0.93817 0.90219 0.90017 0.91808 0.90877 0.90555 0.86546 0.87231 0.91614 0.89493 0.90831 0.91160 0.91067 0.93290 0.94395 0.93168 0.78221 0.93672 0.91174 0.89465 0.90882 0.90219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.37 -4.18 10.24 -55.14 -0.56 -4.75 16 3 C 0.05 0.43 4.97 36.01 0.18 0.61 16 4 C 0.52 6.54 7.75 -10.98 -0.09 6.45 16 5 O -0.51 -8.95 16.08 -14.35 -0.23 -9.18 16 6 N -0.60 -5.99 2.36 -182.95 -0.43 -6.42 16 7 C 0.08 0.43 10.29 59.85 0.62 1.04 16 8 C 0.10 1.00 4.28 -5.19 -0.02 0.98 16 9 C 0.50 6.70 7.77 -10.98 -0.09 6.61 16 10 O -0.54 -9.01 15.84 5.55 0.09 -8.92 16 11 N -0.61 -7.61 2.97 -172.76 -0.51 -8.12 16 12 C 0.11 1.44 6.43 -3.71 -0.02 1.42 16 13 C -0.13 -1.75 4.96 -26.62 -0.13 -1.88 16 14 C -0.09 -1.38 2.14 -90.58 -0.19 -1.57 16 15 C 0.18 3.45 2.72 -67.93 -0.18 3.27 16 16 H 0.05 0.92 8.08 -51.93 -0.42 0.50 16 17 C -0.17 -3.11 8.79 37.16 0.33 -2.79 16 18 N -0.72 -17.59 5.04 -53.43 -0.27 -17.86 16 19 C -0.23 -6.41 9.93 -15.06 -0.15 -6.56 16 20 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -27.80 13.06 55.49 0.72 -27.08 16 23 Si 0.90 22.42 29.55 -169.99 -5.02 17.40 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 26 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 27 C -0.13 -1.90 4.82 -26.60 -0.13 -2.02 16 28 C 0.10 1.19 6.34 -3.70 -0.02 1.17 16 29 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.08 0.43 7.40 -51.93 -0.38 0.05 16 33 H 0.08 0.57 8.11 -51.93 -0.42 0.15 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.22 6.44 -51.93 -0.33 -0.11 16 36 H 0.08 0.28 7.89 -51.93 -0.41 -0.13 16 37 H 0.12 1.30 6.97 -51.93 -0.36 0.94 16 38 H 0.11 0.72 7.70 -51.93 -0.40 0.32 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.19 7.00 -51.93 -0.36 0.82 16 41 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.07 1.04 6.51 -51.93 -0.34 0.70 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.05 0.92 6.46 -51.93 -0.34 0.58 16 45 H 0.04 0.62 6.46 -51.93 -0.34 0.28 16 46 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 47 H 0.38 9.67 6.04 -40.82 -0.25 9.43 16 48 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 49 H 0.07 1.09 6.51 -51.93 -0.34 0.75 16 50 H 0.09 1.43 6.46 -51.93 -0.34 1.09 16 51 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 52 H 0.08 0.73 5.93 -51.93 -0.31 0.42 16 LS Contribution 407.54 15.07 6.14 6.14 Total: -1.00 -37.43 407.54 -7.65 -45.08 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -8.68 Total: 6.22 kcal Atomic # 6 Polarization: 6.37 SS G_CDS: 1.11 Total: 7.48 kcal Atomic # 7 Polarization: -58.98 SS G_CDS: -0.49 Total: -59.47 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: -0.71 Total: -22.85 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.43 -7.65 -45.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731996122.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.370 kcal (2) G-P(sol) polarization free energy of solvation -37.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds