Wall clock time and date at job start Wed Apr 1 2020 00:11:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47279 * 2 1 4 4 O 1.42892 * 109.47420 * 179.97438 * 3 2 1 5 5 C 1.42907 * 114.00073 * 179.97438 * 4 3 2 6 6 C 1.50702 * 109.46917 * 179.97438 * 5 4 3 7 7 O 1.21283 * 120.00389 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99687 * 179.97438 * 6 5 4 9 9 C 1.47422 * 125.64994 * 354.72953 * 8 6 5 10 10 C 1.54906 * 104.83483 * 155.83342 * 9 8 6 11 11 C 1.55403 * 101.66553 * 36.91988 * 10 9 8 12 12 C 1.47027 * 125.64450 * 174.68190 * 8 6 5 13 13 H 1.09001 * 109.87909 * 300.66897 * 12 8 6 14 14 C 1.52998 * 109.88067 * 61.68111 * 12 8 6 15 15 N 1.46904 * 109.46810 * 182.91291 * 14 12 8 16 16 C 1.46906 * 110.99848 * 72.57710 * 15 14 12 17 17 C 1.46894 * 111.00201 * 196.52869 * 15 14 12 18 18 C 1.50701 * 109.47536 * 169.99899 * 17 15 14 19 19 O 1.21299 * 119.99589 * 0.02562 * 18 17 15 20 20 N 1.34770 * 120.00131 * 180.02562 * 18 17 15 21 21 C 1.37103 * 119.99973 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99704 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00001 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99877 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00295 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46755 * 89.99942 * 25 23 21 27 27 H 1.48496 * 109.47464 * 210.00253 * 25 23 21 28 28 H 1.48499 * 109.46911 * 330.00557 * 25 23 21 29 29 H 1.09001 * 109.47044 * 59.99915 * 1 2 3 30 30 H 1.09004 * 109.47070 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47321 * 299.99927 * 1 2 3 32 32 H 1.09005 * 109.47086 * 239.99923 * 2 1 3 33 33 H 1.09001 * 109.47044 * 120.00085 * 2 1 3 34 34 H 1.09005 * 109.47124 * 59.99946 * 3 2 1 35 35 H 1.09006 * 109.47015 * 300.00479 * 3 2 1 36 36 H 1.08993 * 109.46646 * 60.00770 * 5 4 3 37 37 H 1.08995 * 109.47066 * 300.00233 * 5 4 3 38 38 H 1.09000 * 110.36013 * 274.67110 * 9 8 6 39 39 H 1.08998 * 110.36750 * 36.99161 * 9 8 6 40 40 H 1.08989 * 111.00608 * 155.08070 * 10 9 8 41 41 H 1.09003 * 111.00073 * 278.89695 * 10 9 8 42 42 H 1.09004 * 110.85572 * 206.30452 * 11 10 9 43 43 H 1.09005 * 110.69439 * 82.95202 * 11 10 9 44 44 H 1.08996 * 109.47410 * 62.91807 * 14 12 8 45 45 H 1.08995 * 109.47554 * 302.91157 * 14 12 8 46 46 H 1.09002 * 109.46986 * 64.43357 * 16 15 14 47 47 H 1.09001 * 109.46772 * 184.43602 * 16 15 14 48 48 H 1.08994 * 109.47165 * 304.43326 * 16 15 14 49 49 H 1.08997 * 109.47204 * 290.00537 * 17 15 14 50 50 H 1.09000 * 109.47125 * 50.00107 * 17 15 14 51 51 H 0.96998 * 120.00184 * 0.02562 * 20 18 17 52 52 H 0.96998 * 120.00452 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0502 2.7480 0.0001 6 6 5.5525 2.6290 0.0014 7 8 6.0741 1.5341 0.0022 8 7 6.3164 3.7394 0.0007 9 6 5.8208 5.1232 -0.1115 10 6 6.9229 5.9935 0.5423 11 6 8.2141 5.2526 0.0964 12 6 7.7821 3.7711 0.1125 13 1 8.0926 3.3045 1.0474 14 6 8.4103 3.0329 -1.0712 15 7 9.8708 3.0097 -0.9144 16 6 10.2712 2.0809 0.1511 17 6 10.5311 2.6723 -2.1824 18 6 12.0156 2.8961 -2.0510 19 8 12.4781 3.2968 -1.0036 20 7 12.8293 2.6510 -3.0970 21 6 14.1799 2.8541 -2.9772 22 1 14.5918 3.2101 -2.0444 23 6 15.0187 2.6020 -4.0558 24 7 16.3133 2.7962 -3.9408 25 14 14.3064 1.9855 -5.6689 26 1 13.9569 3.1437 -6.5303 27 1 15.3102 1.1384 -6.3617 28 1 13.0858 1.1847 -5.3971 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 1.9563 -0.8900 36 1 3.7283 3.2893 0.8896 37 1 3.7289 3.2884 -0.8903 38 1 5.6930 5.3966 -1.1589 39 1 4.8801 5.2341 0.4279 40 1 6.9007 7.0107 0.1515 41 1 6.8288 5.9922 1.6283 42 1 9.0249 5.4255 0.8042 43 1 8.5061 5.5582 -0.9084 44 1 8.1526 3.5459 -1.9976 45 1 8.0322 2.0111 -1.1043 46 1 9.9999 1.0639 -0.1326 47 1 11.3493 2.1414 0.2996 48 1 9.7614 2.3481 1.0766 49 1 10.3413 1.6265 -2.4239 50 1 10.1372 3.3059 -2.9771 51 1 12.4594 2.3309 -3.9346 52 1 16.8989 2.6205 -4.6938 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733925023.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:24 Heat of formation + Delta-G solvation = -128.511212 kcal Electronic energy + Delta-G solvation = -30135.461167 eV Core-core repulsion = 25941.500333 eV Total energy + Delta-G solvation = -4193.960834 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.41488 -40.46330 -39.30460 -38.29576 -37.44801 -35.89827 -34.59935 -33.75685 -32.85601 -31.57508 -29.53376 -29.03091 -27.47687 -26.55414 -26.30027 -24.23798 -22.98287 -22.48090 -21.72210 -21.26658 -20.27841 -19.91616 -18.43582 -18.03214 -17.53217 -17.39445 -17.12143 -16.85920 -16.63390 -16.28267 -15.96681 -15.77934 -15.53555 -15.27266 -14.93941 -14.74037 -14.61511 -14.42707 -14.30124 -14.09811 -13.78215 -13.66219 -13.29396 -13.16867 -13.04970 -13.00799 -12.88874 -12.76797 -12.64016 -12.43953 -12.38523 -12.05747 -11.99276 -11.83109 -11.80579 -11.78942 -11.54797 -11.47799 -10.86175 -10.68619 -10.41478 -10.23491 -9.73515 -9.28053 -8.41163 -6.01542 1.29842 1.34225 1.43067 1.50731 1.59428 1.94514 2.22263 2.56306 2.88913 3.13712 3.23870 3.46871 3.67617 3.82120 3.90032 4.02641 4.07762 4.08271 4.17438 4.21765 4.25454 4.28506 4.32417 4.36872 4.41148 4.41596 4.52432 4.55752 4.58524 4.64579 4.66379 4.74373 4.83671 4.85315 5.03240 5.06411 5.12026 5.16185 5.19617 5.22411 5.33061 5.36776 5.44172 5.52687 5.84373 5.96223 6.04951 6.12669 6.49093 6.59691 6.88317 7.10235 7.39480 7.96254 8.76354 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.015401 B = 0.002037 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1817.627444 B =13744.430004 C =14836.056738 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.057 3.943 4 O -0.405 6.405 5 C 0.055 3.945 6 C 0.518 3.482 7 O -0.574 6.574 8 N -0.612 5.612 9 C 0.093 3.907 10 C -0.126 4.126 11 C -0.110 4.110 12 C 0.145 3.855 13 H 0.055 0.945 14 C 0.052 3.948 15 N -0.522 5.522 16 C 0.030 3.970 17 C 0.054 3.946 18 C 0.455 3.545 19 O -0.601 6.601 20 N -0.593 5.593 21 C -0.326 4.326 22 H 0.058 0.942 23 C -0.013 4.013 24 N -0.933 5.933 25 Si 0.962 3.038 26 H -0.254 1.254 27 H -0.275 1.275 28 H -0.237 1.237 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.109 0.891 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.108 0.892 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.087 0.913 45 H 0.029 0.971 46 H 0.017 0.983 47 H 0.062 0.938 48 H 0.071 0.929 49 H 0.066 0.934 50 H 0.123 0.877 51 H 0.388 0.612 52 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.950 4.599 4.164 37.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C -0.019 4.019 4 O -0.324 6.324 5 C -0.024 4.024 6 C 0.307 3.693 7 O -0.453 6.453 8 N -0.347 5.347 9 C -0.028 4.028 10 C -0.164 4.164 11 C -0.149 4.149 12 C 0.041 3.959 13 H 0.073 0.927 14 C -0.076 4.076 15 N -0.246 5.246 16 C -0.118 4.118 17 C -0.078 4.078 18 C 0.243 3.757 19 O -0.484 6.484 20 N -0.234 5.234 21 C -0.455 4.455 22 H 0.076 0.924 23 C -0.212 4.212 24 N -0.574 5.574 25 Si 0.783 3.217 26 H -0.178 1.178 27 H -0.200 1.200 28 H -0.160 1.160 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.127 0.873 37 H 0.127 0.873 38 H 0.108 0.892 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.105 0.895 45 H 0.047 0.953 46 H 0.036 0.964 47 H 0.081 0.919 48 H 0.090 0.910 49 H 0.084 0.916 50 H 0.140 0.860 51 H 0.223 0.777 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -35.983 4.515 4.932 36.599 hybrid contribution 0.520 -1.317 -0.949 1.705 sum -35.463 3.198 3.983 35.829 Atomic orbital electron populations 1.21663 0.92804 1.02819 1.02821 1.21497 0.97169 0.95487 1.02426 1.22817 0.78673 0.98515 1.01859 1.87975 1.21704 1.26942 1.95787 1.22276 0.88408 0.86558 1.05150 1.20714 0.89990 0.82824 0.75783 1.90725 1.75615 1.28173 1.50742 1.48611 1.06483 1.07363 1.72263 1.22734 0.99001 0.78368 1.02699 1.22879 0.92370 0.99709 1.01450 1.22537 0.98321 0.90860 1.03136 1.21434 0.79336 0.98230 0.96919 0.92687 1.22449 0.86083 0.99591 0.99510 1.61483 1.06382 1.51629 1.05099 1.22402 1.02041 0.92561 0.94807 1.21856 0.90451 1.01670 0.93788 1.20698 0.89226 0.81892 0.83904 1.90509 1.77884 1.50257 1.29778 1.42034 1.06377 1.61428 1.13606 1.19005 0.82096 1.43994 1.00433 0.92435 1.26059 0.95279 0.97148 1.02710 1.69796 1.04561 1.49178 1.33865 0.85398 0.79420 0.79548 0.77378 1.17846 1.20005 1.16048 0.91628 0.91766 0.91611 0.92323 0.92317 0.91404 0.91380 0.87345 0.87321 0.89232 0.87450 0.87381 0.90251 0.90911 0.90319 0.89475 0.95253 0.96433 0.91909 0.91021 0.91587 0.85958 0.77662 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 9.91 71.98 0.71 -0.36 16 2 C -0.13 -1.63 6.30 30.59 0.19 -1.44 16 3 C 0.06 0.68 5.94 71.98 0.43 1.11 16 4 O -0.40 -8.27 9.88 -129.94 -1.28 -9.55 16 5 C 0.06 0.77 5.35 71.24 0.38 1.15 16 6 C 0.52 11.91 7.75 87.66 0.68 12.59 16 7 O -0.57 -19.82 15.31 16.00 0.24 -19.58 16 8 N -0.61 -11.25 3.06 -788.05 -2.42 -13.67 16 9 C 0.09 0.79 6.74 86.85 0.59 1.38 16 10 C -0.13 -1.25 7.09 32.07 0.23 -1.02 16 11 C -0.11 -2.06 6.26 31.87 0.20 -1.86 16 12 C 0.14 3.37 2.94 45.34 0.13 3.51 16 13 H 0.06 1.53 6.61 -2.39 -0.02 1.52 16 14 C 0.05 1.44 4.35 86.30 0.38 1.81 16 15 N -0.52 -17.45 4.20 -927.06 -3.89 -21.35 16 16 C 0.03 1.08 9.04 127.69 1.15 2.24 16 17 C 0.05 1.84 5.44 85.56 0.47 2.30 16 18 C 0.46 21.36 7.51 87.66 0.66 22.01 16 19 O -0.60 -33.70 13.88 -3.09 -0.04 -33.74 16 20 N -0.59 -28.85 5.09 -306.98 -1.56 -30.42 16 21 C -0.33 -19.43 10.16 84.04 0.85 -18.57 16 22 H 0.06 4.05 7.39 -2.91 -0.02 4.03 16 23 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 24 N -0.93 -56.87 13.96 21.66 0.30 -56.57 16 25 Si 0.96 39.74 27.74 68.60 1.90 41.64 16 26 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.24 -8.46 6.52 99.48 0.65 -7.81 16 29 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 30 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 33 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 35 H 0.07 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.11 0.83 7.96 -2.39 -0.02 0.81 16 37 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.11 0.28 7.47 -2.39 -0.02 0.26 16 40 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 1.60 8.14 -2.38 -0.02 1.58 16 43 H 0.08 1.54 7.80 -2.38 -0.02 1.52 16 44 H 0.09 2.08 7.73 -2.39 -0.02 2.06 16 45 H 0.03 0.95 6.50 -2.39 -0.02 0.94 16 46 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 47 H 0.06 2.71 5.89 -2.39 -0.01 2.69 16 48 H 0.07 2.34 6.53 -2.39 -0.02 2.33 16 49 H 0.07 2.08 8.12 -2.39 -0.02 2.06 16 50 H 0.12 3.38 7.86 -2.39 -0.02 3.36 16 51 H 0.39 15.86 5.76 -92.71 -0.53 15.33 16 52 H 0.28 15.53 8.31 -92.71 -0.77 14.76 16 Total: -1.00 -86.78 413.89 1.08 -85.70 By element: Atomic # 1 Polarization: 32.65 SS G_CDS: 0.31 Total: 32.96 kcal Atomic # 6 Polarization: 17.04 SS G_CDS: 7.51 Total: 24.56 kcal Atomic # 7 Polarization: -114.43 SS G_CDS: -7.57 Total: -121.99 kcal Atomic # 8 Polarization: -61.79 SS G_CDS: -1.08 Total: -62.87 kcal Atomic # 14 Polarization: 39.74 SS G_CDS: 1.90 Total: 41.64 kcal Total: -86.78 1.08 -85.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733925023.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.810 kcal (2) G-P(sol) polarization free energy of solvation -86.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds