Wall clock time and date at job start Wed Apr 1 2020 01:04:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46757 * 2 1 4 4 O 1.42898 * 109.47252 * 120.00148 * 2 1 3 5 5 C 1.42898 * 113.99963 * 89.99779 * 4 2 1 6 6 C 1.50703 * 109.46878 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00441 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99900 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99826 * 179.72365 * 8 6 5 10 10 H 1.09000 * 109.49909 * 35.00963 * 9 8 6 11 11 C 1.53113 * 109.50617 * 274.92748 * 9 8 6 12 12 C 1.53205 * 109.11666 * 297.67466 * 11 9 8 13 13 C 1.53041 * 109.30163 * 302.37291 * 12 11 9 14 14 N 1.46847 * 109.52246 * 59.17640 * 13 12 11 15 15 C 1.46896 * 110.99626 * 174.16106 * 14 13 12 16 16 C 1.50699 * 109.47180 * 59.25649 * 15 14 13 17 17 O 1.21296 * 120.00102 * 6.81913 * 16 15 14 18 18 N 1.34774 * 120.00076 * 186.82335 * 16 15 14 19 19 C 1.37098 * 120.00415 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99573 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00470 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99550 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00142 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46619 * 89.99936 * 23 21 19 25 25 H 1.48490 * 109.47152 * 209.99743 * 23 21 19 26 26 H 1.48497 * 109.47259 * 330.00351 * 23 21 19 27 27 C 1.46845 * 111.19560 * 298.26130 * 14 13 12 28 28 H 1.08999 * 109.45582 * 301.72908 * 27 14 13 29 29 C 1.53008 * 109.45867 * 181.75960 * 27 14 13 30 30 H 1.08998 * 109.47156 * 60.00076 * 1 2 3 31 31 H 1.09007 * 109.47133 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46870 * 299.99561 * 1 2 3 33 33 H 1.09002 * 109.46870 * 240.00439 * 2 1 3 34 34 H 1.09002 * 109.46564 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47226 * 299.99881 * 3 2 1 36 36 H 1.08994 * 109.47056 * 60.00236 * 3 2 1 37 37 H 1.08999 * 109.47083 * 60.00399 * 5 4 2 38 38 H 1.08999 * 109.47134 * 300.00004 * 5 4 2 39 39 H 0.96998 * 119.99749 * 0.02562 * 8 6 5 40 40 H 1.09001 * 109.52767 * 57.61720 * 11 9 8 41 41 H 1.08998 * 109.52447 * 177.81187 * 11 9 8 42 42 H 1.08998 * 109.49632 * 182.41955 * 12 11 9 43 43 H 1.09003 * 109.49082 * 62.32416 * 12 11 9 44 44 H 1.09002 * 109.45709 * 299.15878 * 13 12 11 45 45 H 1.09003 * 109.45880 * 179.19347 * 13 12 11 46 46 H 1.09000 * 109.46854 * 179.25362 * 15 14 13 47 47 H 1.09002 * 109.47211 * 299.25044 * 15 14 13 48 48 H 0.97005 * 120.00221 * 359.97438 * 18 16 15 49 49 H 0.97001 * 120.00191 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.47149 * 307.34935 * 29 27 14 51 51 H 1.08995 * 109.46998 * 67.34760 * 29 27 14 52 52 H 1.08994 * 109.46837 * 187.34684 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 -2.0782 0.9885 6 6 2.7015 -2.6832 2.2745 7 8 2.8754 -1.9809 3.2478 8 7 2.9557 -4.0050 2.3432 9 6 3.4489 -4.5922 3.5915 10 1 2.9968 -4.0774 4.4392 11 6 4.9717 -4.4470 3.6582 12 6 5.6011 -5.2235 2.4971 13 6 5.1692 -6.6896 2.5762 14 7 3.7048 -6.7742 2.5081 15 6 3.2609 -8.1729 2.4419 16 6 3.7463 -8.9123 3.6620 17 8 4.2899 -8.3070 4.5616 18 7 3.5766 -10.2462 3.7535 19 6 4.0187 -10.9190 4.8632 20 1 4.5033 -10.3802 5.6639 21 6 3.8441 -12.2943 4.9573 22 7 3.2549 -12.9500 3.9828 23 14 4.4471 -13.2111 6.4690 24 1 3.3656 -13.2542 7.4858 25 1 4.8256 -14.5959 6.0899 26 1 5.6293 -12.5116 7.0333 27 6 3.0795 -6.0765 3.6388 28 1 3.4348 -6.5095 4.5739 29 6 1.5593 -6.2265 3.5527 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 2.9320 -2.2467 0.1986 38 1 1.2538 -2.5433 0.7124 39 1 2.8163 -4.5668 1.5648 40 1 5.2410 -3.3935 3.5814 41 1 5.3349 -4.8487 4.6041 42 1 6.6872 -5.1600 2.5634 43 1 5.2681 -4.7965 1.5511 44 1 5.5146 -7.1197 3.5163 45 1 5.6041 -7.2417 1.7429 46 1 2.1720 -8.2072 2.4056 47 1 3.6692 -8.6417 1.5465 48 1 3.1416 -10.7303 3.0341 49 1 3.1334 -13.9101 4.0482 50 1 1.2187 -5.9143 2.5655 51 1 1.2871 -7.2689 3.7180 52 1 1.0891 -5.6033 4.3132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734450541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:47 Heat of formation + Delta-G solvation = -120.657137 kcal Electronic energy + Delta-G solvation = -31165.016734 eV Core-core repulsion = 26971.396478 eV Total energy + Delta-G solvation = -4193.620256 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.43145 -39.32769 -38.25432 -37.26289 -34.53070 -33.73892 -33.08824 -32.89986 -31.41943 -31.11900 -28.20381 -27.55560 -27.21994 -26.29624 -24.60754 -22.69907 -21.64001 -21.47276 -20.80101 -19.47998 -18.91501 -17.85797 -17.38152 -17.20482 -16.17091 -16.04954 -15.77765 -15.26489 -15.11834 -14.86348 -14.65290 -14.46152 -14.04071 -13.89988 -13.86120 -13.74439 -13.21305 -13.12039 -12.89171 -12.75495 -12.52171 -12.44195 -12.24349 -11.94394 -11.82981 -11.78100 -11.70258 -11.61489 -11.32035 -11.17615 -11.05810 -10.97446 -10.49317 -10.45573 -10.36817 -10.31094 -10.01504 -9.93861 -9.70842 -9.50784 -9.29498 -8.88055 -8.05207 -7.49038 -6.50624 -3.91973 2.65111 2.76798 3.10717 3.20929 3.26259 3.76386 3.82799 4.10332 4.23562 4.51412 4.65528 4.75431 4.82664 4.86287 4.91440 4.96326 5.02610 5.05550 5.14883 5.22317 5.25368 5.35316 5.36666 5.45791 5.49981 5.54882 5.70339 5.73861 5.83229 5.84290 5.87763 5.92701 5.96212 5.99186 6.09018 6.15485 6.17249 6.22981 6.33143 6.36954 6.52571 6.61212 6.76403 6.86826 7.29771 7.40837 7.46323 7.64526 7.95845 8.30861 8.50082 9.07914 9.43786 9.93956 10.65788 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027694 B = 0.002097 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.789288 B =13347.991962 C =13673.428905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.149 4.149 4 O -0.357 6.357 5 C 0.044 3.956 6 C 0.510 3.490 7 O -0.528 6.528 8 N -0.707 5.707 9 C 0.162 3.838 10 H 0.087 0.913 11 C -0.131 4.131 12 C -0.108 4.108 13 C 0.037 3.963 14 N -0.510 5.510 15 C 0.038 3.962 16 C 0.406 3.594 17 O -0.594 6.594 18 N -0.555 5.555 19 C -0.302 4.302 20 H 0.103 0.897 21 C 0.024 3.976 22 N -0.898 5.898 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.056 3.944 28 H 0.100 0.900 29 C -0.143 4.143 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.407 0.593 40 H 0.063 0.937 41 H 0.073 0.927 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.076 0.924 45 H 0.064 0.936 46 H 0.093 0.907 47 H 0.087 0.913 48 H 0.393 0.607 49 H 0.273 0.727 50 H 0.056 0.944 51 H 0.058 0.942 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.862 18.950 -12.009 22.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.206 4.206 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.295 3.705 7 O -0.404 6.404 8 N -0.361 5.361 9 C 0.057 3.943 10 H 0.105 0.895 11 C -0.170 4.170 12 C -0.146 4.146 13 C -0.091 4.091 14 N -0.234 5.234 15 C -0.094 4.094 16 C 0.192 3.808 17 O -0.481 6.481 18 N -0.190 5.190 19 C -0.432 4.432 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.538 5.538 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.052 4.052 28 H 0.117 0.883 29 C -0.201 4.201 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.088 0.912 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.242 0.758 40 H 0.082 0.918 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.094 0.906 45 H 0.082 0.918 46 H 0.111 0.889 47 H 0.105 0.895 48 H 0.226 0.774 49 H 0.083 0.917 50 H 0.075 0.925 51 H 0.077 0.923 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.536 19.984 -10.981 23.075 hybrid contribution 0.097 -1.865 0.279 1.888 sum -3.438 18.119 -10.702 21.323 Atomic orbital electron populations 1.22316 0.95870 1.02467 1.02725 1.22164 0.93780 0.94028 0.87971 1.21848 1.01935 0.94306 1.02560 1.88070 1.86546 1.17879 1.35080 1.22248 1.01115 0.83970 0.96282 1.20206 0.78220 0.82590 0.89518 1.90716 1.51553 1.60604 1.37488 1.45892 1.66832 1.07458 1.15871 1.21041 0.93940 0.92807 0.86508 0.89523 1.21957 0.95065 1.00333 0.99604 1.21510 0.99409 0.95329 0.98393 1.22323 0.87714 0.96038 1.03037 1.62427 1.07806 1.11564 1.41622 1.22106 1.01611 0.88438 0.97256 1.21057 0.86181 0.83422 0.90141 1.90404 1.48828 1.66814 1.42070 1.42056 1.51369 1.06004 1.19604 1.19706 1.35552 0.90119 0.97856 0.87962 1.25285 0.97040 0.96783 0.98679 1.69604 1.42493 1.09478 1.32259 0.85867 0.79206 0.78433 0.80863 1.20350 1.20851 1.19427 1.22160 0.94604 0.91812 0.96642 0.88297 1.21847 0.94719 1.01938 1.01558 0.91581 0.92431 0.91593 0.92086 0.91899 0.91217 0.91614 0.90481 0.90534 0.75772 0.91826 0.90879 0.92033 0.92113 0.90574 0.91755 0.88897 0.89483 0.77412 0.91747 0.92468 0.92253 0.92542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 9.53 37.16 0.35 -0.85 16 2 C 0.08 0.62 3.34 -26.73 -0.09 0.53 16 3 C -0.15 -1.05 9.56 37.16 0.36 -0.70 16 4 O -0.36 -4.14 9.52 -55.14 -0.52 -4.67 16 5 C 0.04 0.42 6.23 36.01 0.22 0.64 16 6 C 0.51 6.58 7.87 -10.98 -0.09 6.49 16 7 O -0.53 -9.19 16.16 -14.35 -0.23 -9.43 16 8 N -0.71 -8.17 3.81 -53.73 -0.20 -8.37 16 9 C 0.16 2.22 2.26 -67.85 -0.15 2.06 16 10 H 0.09 1.31 7.57 -51.93 -0.39 0.92 16 11 C -0.13 -1.81 5.68 -26.57 -0.15 -1.96 16 12 C -0.11 -1.40 5.93 -26.60 -0.16 -1.56 16 13 C 0.04 0.55 4.99 -3.83 -0.02 0.53 16 14 N -0.51 -7.37 4.17 -228.12 -0.95 -8.32 16 15 C 0.04 0.60 5.46 -4.98 -0.03 0.57 16 16 C 0.41 8.72 7.17 -10.99 -0.08 8.64 16 17 O -0.59 -14.34 11.24 5.54 0.06 -14.28 16 18 N -0.56 -13.27 5.29 -10.96 -0.06 -13.33 16 19 C -0.30 -8.10 9.68 -14.93 -0.14 -8.24 16 20 H 0.10 2.89 7.16 -52.49 -0.38 2.51 16 21 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 22 N -0.90 -23.69 13.05 55.50 0.72 -22.96 16 23 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 24 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 27 C 0.06 0.84 1.77 -67.72 -0.12 0.72 16 28 H 0.10 1.87 5.68 -51.93 -0.29 1.57 16 29 C -0.14 -1.91 8.23 37.16 0.31 -1.61 16 30 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.38 7.79 -51.93 -0.40 -0.02 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 38 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 39 H 0.41 4.04 7.96 -40.82 -0.32 3.71 16 40 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 41 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.72 7.73 -51.93 -0.40 0.32 16 44 H 0.08 1.45 5.70 -51.93 -0.30 1.15 16 45 H 0.06 0.94 8.12 -51.93 -0.42 0.51 16 46 H 0.09 1.36 6.09 -51.93 -0.32 1.04 16 47 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 48 H 0.39 9.05 7.90 -40.82 -0.32 8.73 16 49 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 50 H 0.06 0.66 7.66 -51.93 -0.40 0.26 16 51 H 0.06 0.87 6.67 -51.93 -0.35 0.52 16 52 H 0.06 0.73 8.13 -51.93 -0.42 0.31 16 LS Contribution 406.85 15.07 6.13 6.13 Total: -1.00 -31.36 406.85 -8.85 -40.21 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -8.89 Total: 13.64 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 0.12 Total: 5.82 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.49 Total: -52.98 kcal Atomic # 8 Polarization: -27.67 SS G_CDS: -0.69 Total: -28.37 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.36 -8.85 -40.21 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734450541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.446 kcal (2) G-P(sol) polarization free energy of solvation -31.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds