Wall clock time and date at job start Wed Apr 1 2020 01:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46757 * 2 1 4 4 O 1.42898 * 109.47252 * 120.00148 * 2 1 3 5 5 C 1.42898 * 113.99963 * 89.99779 * 4 2 1 6 6 C 1.50703 * 109.46878 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00441 * 0.02562 * 6 5 4 8 8 N 1.34782 * 119.99900 * 179.97438 * 6 5 4 9 9 C 1.46500 * 119.99826 * 179.72365 * 8 6 5 10 10 H 1.09000 * 109.49909 * 35.00963 * 9 8 6 11 11 C 1.53113 * 109.50617 * 274.92748 * 9 8 6 12 12 C 1.53205 * 109.11666 * 297.67466 * 11 9 8 13 13 C 1.53041 * 109.30163 * 302.37291 * 12 11 9 14 14 N 1.46847 * 109.52246 * 59.17640 * 13 12 11 15 15 C 1.46896 * 110.99626 * 174.16106 * 14 13 12 16 16 C 1.50699 * 109.47180 * 59.25649 * 15 14 13 17 17 O 1.21296 * 120.00102 * 6.81913 * 16 15 14 18 18 N 1.34774 * 120.00076 * 186.82335 * 16 15 14 19 19 C 1.37098 * 120.00415 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99573 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00470 * 180.02562 * 19 18 16 22 22 N 1.31408 * 119.99550 * 359.97438 * 21 19 18 23 23 Si 1.86797 * 120.00142 * 179.97438 * 21 19 18 24 24 H 1.48506 * 109.46619 * 89.99936 * 23 21 19 25 25 H 1.48490 * 109.47152 * 209.99743 * 23 21 19 26 26 H 1.48497 * 109.47259 * 330.00351 * 23 21 19 27 27 C 1.46845 * 111.19560 * 298.26130 * 14 13 12 28 28 H 1.08999 * 109.45582 * 301.72908 * 27 14 13 29 29 C 1.53008 * 109.45867 * 181.75960 * 27 14 13 30 30 H 1.08998 * 109.47156 * 60.00076 * 1 2 3 31 31 H 1.09007 * 109.47133 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46870 * 299.99561 * 1 2 3 33 33 H 1.09002 * 109.46870 * 240.00439 * 2 1 3 34 34 H 1.09002 * 109.46564 * 180.02562 * 3 2 1 35 35 H 1.08998 * 109.47226 * 299.99881 * 3 2 1 36 36 H 1.08994 * 109.47056 * 60.00236 * 3 2 1 37 37 H 1.08999 * 109.47083 * 60.00399 * 5 4 2 38 38 H 1.08999 * 109.47134 * 300.00004 * 5 4 2 39 39 H 0.96998 * 119.99749 * 0.02562 * 8 6 5 40 40 H 1.09001 * 109.52767 * 57.61720 * 11 9 8 41 41 H 1.08998 * 109.52447 * 177.81187 * 11 9 8 42 42 H 1.08998 * 109.49632 * 182.41955 * 12 11 9 43 43 H 1.09003 * 109.49082 * 62.32416 * 12 11 9 44 44 H 1.09002 * 109.45709 * 299.15878 * 13 12 11 45 45 H 1.09003 * 109.45880 * 179.19347 * 13 12 11 46 46 H 1.09000 * 109.46854 * 179.25362 * 15 14 13 47 47 H 1.09002 * 109.47211 * 299.25044 * 15 14 13 48 48 H 0.97005 * 120.00221 * 359.97438 * 18 16 15 49 49 H 0.97001 * 120.00191 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.47149 * 307.34935 * 29 27 14 51 51 H 1.08995 * 109.46998 * 67.34760 * 29 27 14 52 52 H 1.08994 * 109.46837 * 187.34684 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.2001 -2.0782 0.9885 6 6 2.7015 -2.6832 2.2745 7 8 2.8754 -1.9809 3.2478 8 7 2.9557 -4.0050 2.3432 9 6 3.4489 -4.5922 3.5915 10 1 2.9968 -4.0774 4.4392 11 6 4.9717 -4.4470 3.6582 12 6 5.6011 -5.2235 2.4971 13 6 5.1692 -6.6896 2.5762 14 7 3.7048 -6.7742 2.5081 15 6 3.2609 -8.1729 2.4419 16 6 3.7463 -8.9123 3.6620 17 8 4.2899 -8.3070 4.5616 18 7 3.5766 -10.2462 3.7535 19 6 4.0187 -10.9190 4.8632 20 1 4.5033 -10.3802 5.6639 21 6 3.8441 -12.2943 4.9573 22 7 3.2549 -12.9500 3.9828 23 14 4.4471 -13.2111 6.4690 24 1 3.3656 -13.2542 7.4858 25 1 4.8256 -14.5959 6.0899 26 1 5.6293 -12.5116 7.0333 27 6 3.0795 -6.0765 3.6388 28 1 3.4348 -6.5095 4.5739 29 6 1.5593 -6.2265 3.5527 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 2.9320 -2.2467 0.1986 38 1 1.2538 -2.5433 0.7124 39 1 2.8163 -4.5668 1.5648 40 1 5.2410 -3.3935 3.5814 41 1 5.3349 -4.8487 4.6041 42 1 6.6872 -5.1600 2.5634 43 1 5.2681 -4.7965 1.5511 44 1 5.5146 -7.1197 3.5163 45 1 5.6041 -7.2417 1.7429 46 1 2.1720 -8.2072 2.4056 47 1 3.6692 -8.6417 1.5465 48 1 3.1416 -10.7303 3.0341 49 1 3.1334 -13.9101 4.0482 50 1 1.2187 -5.9143 2.5655 51 1 1.2871 -7.2689 3.7180 52 1 1.0891 -5.6033 4.3132 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734450541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:43 Heat of formation + Delta-G solvation = -142.694314 kcal Electronic energy + Delta-G solvation = -31165.972338 eV Core-core repulsion = 26971.396478 eV Total energy + Delta-G solvation = -4194.575859 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.64913 -40.54875 -39.29982 -38.53907 -36.13224 -35.25782 -34.13293 -33.67506 -33.28576 -32.31498 -29.24786 -28.58042 -28.02764 -27.42284 -26.35531 -23.96935 -22.67107 -22.20999 -21.91973 -21.02953 -20.32571 -19.66225 -18.37576 -17.98286 -17.62237 -17.03793 -16.92540 -16.60413 -16.38164 -16.16912 -15.85051 -15.70214 -15.56064 -15.20837 -14.95406 -14.90682 -14.36202 -14.30681 -13.85718 -13.70002 -13.53994 -13.45311 -13.24504 -13.04902 -13.02597 -12.95226 -12.89504 -12.82661 -12.53136 -12.43680 -12.31416 -12.26390 -12.12198 -11.79935 -11.60178 -11.54448 -11.36680 -11.18403 -10.94436 -10.75914 -10.58874 -9.98048 -9.97725 -9.01661 -8.46474 -5.95543 1.34574 1.39492 1.50942 1.66879 1.90866 2.04079 2.27858 2.91213 3.12097 3.20199 3.28462 3.69391 3.84258 3.85824 4.02051 4.06722 4.14622 4.16199 4.27041 4.32942 4.37602 4.39596 4.42076 4.49118 4.60430 4.64700 4.72265 4.74770 4.78305 4.81978 4.85784 4.92994 4.94794 4.97693 5.04241 5.06885 5.13322 5.20651 5.29970 5.32241 5.36564 5.38350 5.43176 5.59627 5.91417 6.06830 6.11542 6.23536 6.59466 6.71637 7.12591 7.35182 7.56990 8.12209 8.68708 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027694 B = 0.002097 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1010.789288 B =13347.991962 C =13673.428905 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 C -0.150 4.150 4 O -0.394 6.394 5 C 0.047 3.953 6 C 0.508 3.492 7 O -0.580 6.580 8 N -0.691 5.691 9 C 0.170 3.830 10 H 0.068 0.932 11 C -0.128 4.128 12 C -0.098 4.098 13 C 0.038 3.962 14 N -0.487 5.487 15 C 0.046 3.954 16 C 0.409 3.591 17 O -0.622 6.622 18 N -0.570 5.570 19 C -0.331 4.331 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.917 5.917 23 Si 0.987 3.013 24 H -0.273 1.273 25 H -0.271 1.271 26 H -0.276 1.276 27 C 0.062 3.938 28 H 0.055 0.945 29 C -0.138 4.138 30 H 0.085 0.915 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.093 0.907 36 H 0.049 0.951 37 H 0.108 0.892 38 H 0.104 0.896 39 H 0.419 0.581 40 H 0.061 0.939 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.082 0.918 44 H 0.033 0.967 45 H 0.077 0.923 46 H 0.116 0.884 47 H 0.112 0.888 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.084 0.916 51 H 0.046 0.954 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.627 19.394 -14.920 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.015 3.985 3 C -0.207 4.207 4 O -0.313 6.313 5 C -0.032 4.032 6 C 0.295 3.705 7 O -0.459 6.459 8 N -0.345 5.345 9 C 0.065 3.935 10 H 0.086 0.914 11 C -0.167 4.167 12 C -0.135 4.135 13 C -0.090 4.090 14 N -0.210 5.210 15 C -0.085 4.085 16 C 0.196 3.804 17 O -0.510 6.510 18 N -0.207 5.207 19 C -0.461 4.461 20 H 0.094 0.906 21 C -0.211 4.211 22 N -0.558 5.558 23 Si 0.811 3.189 24 H -0.199 1.199 25 H -0.196 1.196 26 H -0.201 1.201 27 C -0.047 4.047 28 H 0.073 0.927 29 C -0.195 4.195 30 H 0.104 0.896 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.258 0.742 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.052 0.948 45 H 0.095 0.905 46 H 0.134 0.866 47 H 0.130 0.870 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.103 0.897 51 H 0.065 0.935 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.314 20.422 -13.939 25.099 hybrid contribution 0.352 -1.885 1.192 2.258 sum -3.962 18.537 -12.747 22.842 Atomic orbital electron populations 1.22308 0.95227 1.02751 1.02884 1.22405 0.94338 0.94120 0.87666 1.21888 1.01551 0.94297 1.02978 1.88037 1.87070 1.18931 1.37303 1.22337 1.03104 0.83313 0.94432 1.20913 0.77069 0.82294 0.90218 1.90700 1.53819 1.61765 1.39657 1.45693 1.66129 1.07457 1.15253 1.20727 0.93784 0.91815 0.87208 0.91389 1.21905 0.95252 1.00189 0.99368 1.21447 0.99972 0.93444 0.98669 1.22294 0.87900 0.97542 1.01274 1.62527 1.07450 1.10399 1.40582 1.22228 1.02974 0.88242 0.95078 1.22195 0.84227 0.82770 0.91202 1.90430 1.49445 1.67323 1.43767 1.42120 1.52495 1.06850 1.19231 1.19599 1.36937 0.90897 0.98630 0.90628 1.25959 0.96989 0.96998 1.01182 1.69656 1.42960 1.09837 1.33334 0.85012 0.78456 0.77536 0.77855 1.19854 1.19553 1.20063 1.21995 0.95721 0.92240 0.94752 0.92700 1.21808 0.93237 1.01268 1.03220 0.89610 0.92073 0.93251 0.89784 0.92527 0.88861 0.93138 0.87468 0.87802 0.74247 0.92021 0.92826 0.91084 0.89918 0.94834 0.90451 0.86627 0.86968 0.77014 0.91347 0.89711 0.93474 0.92469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.98 9.53 71.98 0.69 -1.30 16 2 C 0.07 0.96 3.34 30.60 0.10 1.06 16 3 C -0.15 -1.88 9.56 71.98 0.69 -1.19 16 4 O -0.39 -8.45 9.52 -129.94 -1.24 -9.68 16 5 C 0.05 0.76 6.23 71.24 0.44 1.20 16 6 C 0.51 12.26 7.87 87.66 0.69 12.95 16 7 O -0.58 -20.24 16.16 16.01 0.26 -19.98 16 8 N -0.69 -14.49 3.81 -442.29 -1.68 -16.17 16 9 C 0.17 4.63 2.26 45.04 0.10 4.73 16 10 H 0.07 2.14 7.57 -2.39 -0.02 2.12 16 11 C -0.13 -3.56 5.68 30.70 0.17 -3.38 16 12 C -0.10 -2.36 5.93 30.68 0.18 -2.18 16 13 C 0.04 1.11 4.99 86.33 0.43 1.54 16 14 N -0.49 -13.22 4.17 -875.64 -3.65 -16.87 16 15 C 0.05 1.39 5.46 85.56 0.47 1.86 16 16 C 0.41 17.73 7.17 87.66 0.63 18.36 16 17 O -0.62 -31.22 11.24 -3.08 -0.03 -31.26 16 18 N -0.57 -27.70 5.29 -306.99 -1.62 -29.33 16 19 C -0.33 -18.21 9.68 84.04 0.81 -17.39 16 20 H 0.08 4.48 7.16 -2.91 -0.02 4.46 16 21 C -0.01 -0.58 5.50 84.93 0.47 -0.12 16 22 N -0.92 -48.32 13.05 21.66 0.28 -48.04 16 23 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 25 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 27 C 0.06 1.82 1.77 44.94 0.08 1.90 16 28 H 0.06 2.17 5.68 -2.39 -0.01 2.16 16 29 C -0.14 -3.50 8.23 71.98 0.59 -2.90 16 30 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.64 7.87 -2.38 -0.02 0.62 16 32 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.08 0.73 7.79 -2.39 -0.02 0.71 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.11 1.08 8.08 -2.39 -0.02 1.06 16 38 H 0.10 1.10 7.87 -2.39 -0.02 1.08 16 39 H 0.42 6.74 7.96 -92.71 -0.74 6.00 16 40 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.08 1.68 7.73 -2.39 -0.02 1.66 16 44 H 0.03 1.30 5.70 -2.39 -0.01 1.29 16 45 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 46 H 0.12 3.06 6.09 -2.39 -0.01 3.05 16 47 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 48 H 0.40 18.32 7.90 -92.70 -0.73 17.59 16 49 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 50 H 0.08 1.68 7.66 -2.39 -0.02 1.66 16 51 H 0.05 1.32 6.67 -2.39 -0.02 1.30 16 52 H 0.06 1.44 8.13 -2.39 -0.02 1.42 16 Total: -1.00 -71.88 406.85 0.34 -71.54 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: -0.54 Total: 40.14 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 6.55 Total: 15.14 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -6.67 Total: -110.41 kcal Atomic # 8 Polarization: -59.91 SS G_CDS: -1.01 Total: -60.92 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -71.88 0.34 -71.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734450541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.158 kcal (2) G-P(sol) polarization free energy of solvation -71.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds