Wall clock time and date at job start Wed Apr 1 2020 01:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47317 * 2 1 4 4 O 1.42905 * 109.46924 * 119.99536 * 2 1 3 5 5 C 1.42905 * 113.99882 * 90.00384 * 4 2 1 6 6 C 1.50694 * 109.47242 * 180.02562 * 5 4 2 7 7 O 1.21289 * 120.00178 * 359.97438 * 6 5 4 8 8 N 1.34779 * 120.00125 * 179.97438 * 6 5 4 9 9 C 1.46502 * 119.99794 * 179.97438 * 8 6 5 10 10 H 1.08997 * 109.50351 * 325.08059 * 9 8 6 11 11 C 1.53123 * 109.53399 * 85.18257 * 9 8 6 12 12 C 1.53117 * 109.16036 * 177.61372 * 11 9 8 13 13 C 1.53036 * 109.27488 * 302.34352 * 12 11 9 14 14 N 1.46843 * 109.52932 * 59.17965 * 13 12 11 15 15 C 1.46893 * 111.00305 * 174.15970 * 14 13 12 16 16 C 1.50704 * 109.47461 * 288.14109 * 15 14 13 17 17 O 1.21298 * 119.99373 * 0.02562 * 16 15 14 18 18 N 1.34772 * 120.00651 * 179.97438 * 16 15 14 19 19 C 1.37087 * 120.00481 * 180.02562 * 18 16 15 20 20 H 1.08007 * 120.00124 * 0.02562 * 19 18 16 21 21 C 1.38954 * 120.00431 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00102 * 179.97438 * 21 19 18 23 23 Si 1.86796 * 119.99596 * 0.02562 * 21 19 18 24 24 H 1.48502 * 109.47222 * 90.00192 * 23 21 19 25 25 H 1.48503 * 109.46811 * 209.99787 * 23 21 19 26 26 H 1.48495 * 109.47261 * 329.99763 * 23 21 19 27 27 C 1.46846 * 111.19597 * 298.26162 * 14 13 12 28 28 H 1.09000 * 109.46145 * 301.71952 * 27 14 13 29 29 C 1.53008 * 109.46264 * 181.75502 * 27 14 13 30 30 H 1.08996 * 109.47410 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.47198 * 300.00283 * 1 2 3 32 32 H 1.09000 * 109.47261 * 60.00171 * 1 2 3 33 33 H 1.09000 * 109.47094 * 239.99487 * 2 1 3 34 34 H 1.09000 * 109.47521 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46815 * 300.00102 * 3 2 1 36 36 H 1.09000 * 109.47457 * 59.99710 * 3 2 1 37 37 H 1.08996 * 109.47247 * 59.99420 * 5 4 2 38 38 H 1.09008 * 109.46493 * 299.99602 * 5 4 2 39 39 H 0.96998 * 119.99957 * 0.02562 * 8 6 5 40 40 H 1.09003 * 109.51938 * 297.51792 * 11 9 8 41 41 H 1.08993 * 109.52256 * 57.70481 * 11 9 8 42 42 H 1.08997 * 109.50411 * 62.28180 * 12 11 9 43 43 H 1.09002 * 109.50049 * 182.36365 * 12 11 9 44 44 H 1.09001 * 109.46109 * 299.16310 * 13 12 11 45 45 H 1.09006 * 109.46385 * 179.19915 * 13 12 11 46 46 H 1.09001 * 109.47384 * 48.14333 * 15 14 13 47 47 H 1.09002 * 109.47313 * 168.14151 * 15 14 13 48 48 H 0.97006 * 119.99361 * 0.02562 * 18 16 15 49 49 H 0.96998 * 119.99825 * 179.97438 * 22 21 19 50 50 H 1.08995 * 109.46776 * 67.37503 * 29 27 14 51 51 H 1.08998 * 109.47238 * 187.37845 * 29 27 14 52 52 H 1.08999 * 109.46521 * 307.38001 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 -2.0782 0.9888 6 6 2.7002 -2.6834 2.2751 7 8 2.8741 -1.9809 3.2485 8 7 2.9543 -4.0052 2.3439 9 6 3.4410 -4.5934 3.5943 10 1 4.0946 -3.8830 4.1004 11 6 2.2521 -4.9288 4.4992 12 6 2.7662 -5.5970 5.7773 13 6 3.5642 -6.8492 5.4068 14 7 4.6903 -6.4755 4.5416 15 6 5.5582 -7.6311 4.2786 16 6 6.3283 -7.9755 5.5274 17 8 6.1693 -7.3227 6.5373 18 7 7.1929 -9.0093 5.5224 19 6 7.8931 -9.3230 6.6585 20 1 7.7515 -8.7418 7.5578 21 6 8.7841 -10.3892 6.6536 22 7 9.4556 -10.6895 7.7425 23 14 9.0284 -11.3948 5.0984 24 1 10.1228 -10.7991 4.2905 25 1 9.3846 -12.7899 5.4620 26 1 7.7722 -11.3950 4.3066 27 6 4.2194 -5.8747 3.2871 28 1 3.5691 -6.5792 2.7687 29 6 5.4201 -5.5413 2.3993 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9562 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 2.9319 -2.2467 0.1988 38 1 1.2537 -2.5433 0.7126 39 1 2.8156 -4.5669 1.5654 40 1 1.7199 -4.0128 4.7557 41 1 1.5783 -5.6088 3.9782 42 1 3.4092 -4.9025 6.3178 43 1 1.9214 -5.8762 6.4070 44 1 2.9169 -7.5492 4.8784 45 1 3.9437 -7.3197 6.3139 46 1 4.9479 -8.4838 3.9813 47 1 6.2558 -7.3867 3.4774 48 1 7.3198 -9.5315 4.7148 49 1 10.0773 -11.4340 7.7391 50 1 5.8976 -6.4649 2.0723 51 1 5.0831 -4.9785 1.5288 52 1 6.1348 -4.9431 2.9645 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734450542.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:57 Heat of formation + Delta-G solvation = -139.383436 kcal Electronic energy + Delta-G solvation = -30433.423166 eV Core-core repulsion = 26238.990877 eV Total energy + Delta-G solvation = -4194.432289 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.44109 -40.52383 -39.51896 -38.75527 -36.16000 -35.65343 -34.40395 -33.71136 -33.67895 -32.21957 -29.42903 -28.66109 -28.06034 -27.42118 -26.24489 -24.03558 -22.48877 -22.22834 -21.65737 -21.23620 -20.89263 -20.13259 -18.36784 -18.06961 -17.63867 -17.20590 -16.90362 -16.76573 -16.46866 -16.15704 -15.72220 -15.53507 -15.42905 -15.28378 -15.00892 -14.82326 -14.60931 -14.48233 -14.12138 -13.88119 -13.78401 -13.59521 -13.39772 -13.20747 -13.05211 -13.01454 -12.90677 -12.84917 -12.61193 -12.39020 -12.33956 -12.07751 -11.98193 -11.87947 -11.81370 -11.62288 -11.44203 -11.33476 -10.83607 -10.61408 -10.35478 -10.20838 -10.08279 -9.16713 -8.38789 -5.99467 1.30852 1.37575 1.46037 1.59752 1.74001 2.00830 2.25231 2.61774 3.04467 3.16776 3.25249 3.58832 3.76724 3.77908 4.01047 4.03260 4.04352 4.12064 4.22749 4.23178 4.29849 4.30838 4.34644 4.37493 4.40107 4.45139 4.58254 4.61876 4.76359 4.82461 4.83563 4.84576 4.93044 4.94587 4.95619 4.99071 5.07455 5.22803 5.28144 5.30666 5.34699 5.36761 5.45526 5.56222 5.93005 6.05954 6.19723 6.24970 6.59830 6.63443 6.92230 7.28292 7.43769 8.02758 8.79181 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025629 B = 0.001932 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.249037 B =14492.455295 C =14958.797491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 C -0.152 4.152 4 O -0.397 6.397 5 C 0.047 3.953 6 C 0.509 3.491 7 O -0.577 6.577 8 N -0.702 5.702 9 C 0.161 3.839 10 H 0.057 0.943 11 C -0.118 4.118 12 C -0.108 4.108 13 C 0.060 3.940 14 N -0.537 5.537 15 C 0.053 3.947 16 C 0.451 3.549 17 O -0.607 6.607 18 N -0.593 5.593 19 C -0.326 4.326 20 H 0.052 0.948 21 C -0.018 4.018 22 N -0.938 5.938 23 Si 0.967 3.033 24 H -0.257 1.257 25 H -0.277 1.277 26 H -0.228 1.228 27 C 0.084 3.916 28 H 0.077 0.923 29 C -0.151 4.151 30 H 0.063 0.937 31 H 0.047 0.953 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.420 0.580 40 H 0.053 0.947 41 H 0.087 0.913 42 H 0.042 0.958 43 H 0.082 0.918 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.084 0.916 47 H 0.125 0.875 48 H 0.389 0.611 49 H 0.278 0.722 50 H 0.076 0.924 51 H 0.087 0.913 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.802 12.377 -28.198 36.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.016 3.984 3 C -0.209 4.209 4 O -0.317 6.317 5 C -0.032 4.032 6 C 0.296 3.704 7 O -0.455 6.455 8 N -0.357 5.357 9 C 0.056 3.944 10 H 0.075 0.925 11 C -0.157 4.157 12 C -0.147 4.147 13 C -0.068 4.068 14 N -0.263 5.263 15 C -0.077 4.077 16 C 0.238 3.762 17 O -0.490 6.490 18 N -0.236 5.236 19 C -0.455 4.455 20 H 0.070 0.930 21 C -0.216 4.216 22 N -0.579 5.579 23 Si 0.786 3.214 24 H -0.182 1.182 25 H -0.202 1.202 26 H -0.151 1.151 27 C -0.025 4.025 28 H 0.095 0.905 29 C -0.209 4.209 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.104 0.896 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.067 0.933 37 H 0.129 0.871 38 H 0.127 0.873 39 H 0.258 0.742 40 H 0.072 0.928 41 H 0.106 0.894 42 H 0.061 0.939 43 H 0.101 0.899 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.102 0.898 47 H 0.143 0.857 48 H 0.225 0.775 49 H 0.087 0.913 50 H 0.095 0.905 51 H 0.105 0.895 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -19.341 13.670 -26.311 35.401 hybrid contribution 0.240 -1.476 -0.275 1.520 sum -19.101 12.194 -26.586 34.934 Atomic orbital electron populations 1.22307 0.95148 1.02853 1.02849 1.22397 0.94353 0.93992 0.87640 1.21903 1.01540 0.94536 1.02947 1.88055 1.87110 1.19109 1.37397 1.22380 1.03365 0.83327 0.94129 1.20989 0.76940 0.82188 0.90303 1.90750 1.52783 1.61944 1.40008 1.45641 1.67351 1.07815 1.14890 1.20681 0.94727 0.94283 0.84754 0.92457 1.21878 0.97496 1.00551 0.95768 1.21453 0.99093 0.96468 0.97663 1.22078 0.90773 0.96873 0.97030 1.61223 1.19732 1.29662 1.15681 1.21887 0.97204 0.93737 0.94907 1.20997 0.82568 0.81355 0.91249 1.90550 1.68305 1.53248 1.36931 1.42014 1.39358 1.29941 1.12258 1.18978 1.20613 1.14632 0.91316 0.93005 1.26143 0.95203 0.98195 1.02050 1.69818 1.27376 1.30262 1.30397 0.85342 0.80686 0.77765 0.77561 1.18183 1.20195 1.15139 1.21806 0.96783 0.94542 0.89321 0.90488 1.22010 0.97046 1.02685 0.99114 0.91807 0.93400 0.89635 0.89503 0.92610 0.88826 0.93289 0.87058 0.87298 0.74194 0.92772 0.89406 0.93863 0.89907 0.92877 0.92905 0.89812 0.85706 0.77518 0.91255 0.90477 0.89459 0.93996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 9.53 71.98 0.69 -0.89 16 2 C 0.07 0.82 3.34 30.59 0.10 0.92 16 3 C -0.15 -1.73 9.56 71.98 0.69 -1.04 16 4 O -0.40 -7.61 9.52 -129.94 -1.24 -8.85 16 5 C 0.05 0.57 6.23 71.23 0.44 1.01 16 6 C 0.51 10.45 7.87 87.65 0.69 11.14 16 7 O -0.58 -19.32 16.16 15.98 0.26 -19.06 16 8 N -0.70 -10.35 4.29 -442.28 -1.90 -12.25 16 9 C 0.16 3.55 2.05 45.04 0.09 3.64 16 10 H 0.06 1.81 7.58 -2.39 -0.02 1.79 16 11 C -0.12 -2.61 5.58 30.67 0.17 -2.44 16 12 C -0.11 -2.94 6.09 30.65 0.19 -2.76 16 13 C 0.06 1.78 5.11 86.33 0.44 2.22 16 14 N -0.54 -15.86 4.12 -875.65 -3.61 -19.46 16 15 C 0.05 1.58 5.26 85.56 0.45 2.04 16 16 C 0.45 20.37 7.47 87.66 0.65 21.02 16 17 O -0.61 -34.16 14.42 -3.09 -0.04 -34.20 16 18 N -0.59 -27.87 5.09 -306.98 -1.56 -29.44 16 19 C -0.33 -19.25 10.16 84.04 0.85 -18.40 16 20 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 21 C -0.02 -0.99 5.50 84.93 0.47 -0.53 16 22 N -0.94 -57.09 13.96 21.66 0.30 -56.79 16 23 Si 0.97 38.50 27.74 68.60 1.90 40.40 16 24 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 25 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 26 H -0.23 -7.48 6.52 99.48 0.65 -6.83 16 27 C 0.08 1.65 2.02 44.94 0.09 1.74 16 28 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 29 C -0.15 -2.61 8.52 71.98 0.61 -2.00 16 30 H 0.06 0.48 7.87 -2.39 -0.02 0.46 16 31 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.09 0.51 7.79 -2.39 -0.02 0.49 16 34 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.58 8.14 -2.39 -0.02 0.57 16 36 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.11 0.61 8.08 -2.39 -0.02 0.59 16 38 H 0.11 0.62 7.87 -2.38 -0.02 0.60 16 39 H 0.42 2.43 8.45 -92.71 -0.78 1.64 16 40 H 0.05 1.36 8.14 -2.39 -0.02 1.35 16 41 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.08 1.96 8.14 -2.39 -0.02 1.95 16 44 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 45 H 0.05 2.05 6.35 -2.38 -0.02 2.03 16 46 H 0.08 1.98 8.05 -2.39 -0.02 1.96 16 47 H 0.13 3.00 5.55 -2.39 -0.01 2.99 16 48 H 0.39 14.90 5.76 -92.70 -0.53 14.37 16 49 H 0.28 15.46 8.31 -92.71 -0.77 14.69 16 50 H 0.08 1.10 6.43 -2.39 -0.02 1.09 16 51 H 0.09 1.01 7.30 -2.39 -0.02 0.99 16 52 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -90.67 410.81 0.29 -90.38 By element: Atomic # 1 Polarization: 34.03 SS G_CDS: -0.45 Total: 33.58 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: 6.63 Total: 15.69 kcal Atomic # 7 Polarization: -111.17 SS G_CDS: -6.77 Total: -117.93 kcal Atomic # 8 Polarization: -61.09 SS G_CDS: -1.02 Total: -62.11 kcal Atomic # 14 Polarization: 38.50 SS G_CDS: 1.90 Total: 40.40 kcal Total: -90.67 0.29 -90.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734450542.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.001 kcal (2) G-P(sol) polarization free energy of solvation -90.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds