Wall clock time and date at job start Wed Apr 1 2020 01:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46925 * 2 1 4 4 O 1.42900 * 109.47376 * 240.00040 * 2 1 3 5 5 C 1.42900 * 114.00080 * 210.00203 * 4 2 1 6 6 C 1.50692 * 109.47596 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99702 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00575 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00016 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.50647 * 325.08381 * 9 8 6 11 11 C 1.53123 * 109.50066 * 85.20121 * 9 8 6 12 12 C 1.53117 * 109.16409 * 62.28222 * 11 9 8 13 13 C 1.53043 * 109.27750 * 57.65281 * 12 11 9 14 14 N 1.46843 * 109.52204 * 300.82276 * 13 12 11 15 15 C 1.46905 * 110.99914 * 185.83765 * 14 13 12 16 16 C 1.50700 * 109.46976 * 301.25309 * 15 14 13 17 17 O 1.21291 * 119.99950 * 354.38197 * 16 15 14 18 18 N 1.34775 * 120.00199 * 174.38420 * 16 15 14 19 19 C 1.37093 * 120.00157 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00620 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99995 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00234 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00429 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46665 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47352 * 119.99698 * 23 21 19 26 26 H 1.48498 * 109.47188 * 240.00137 * 23 21 19 27 27 C 1.46847 * 111.19897 * 61.74307 * 14 13 12 28 28 H 1.09000 * 109.45696 * 58.26810 * 27 14 13 29 29 C 1.53002 * 109.46069 * 178.23807 * 27 14 13 30 30 H 1.09004 * 109.46944 * 60.00655 * 1 2 3 31 31 H 1.09005 * 109.47130 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47549 * 300.00298 * 1 2 3 33 33 H 1.09006 * 109.46899 * 119.99891 * 2 1 3 34 34 H 1.09004 * 109.46607 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46834 * 299.99548 * 3 2 1 36 36 H 1.09004 * 109.47031 * 59.99933 * 3 2 1 37 37 H 1.09005 * 109.46666 * 300.00004 * 5 4 2 38 38 H 1.08997 * 109.47530 * 59.99072 * 5 4 2 39 39 H 0.97003 * 119.99644 * 359.97438 * 8 6 5 40 40 H 1.09001 * 109.51921 * 182.19334 * 11 9 8 41 41 H 1.08998 * 109.51711 * 302.37742 * 11 9 8 42 42 H 1.09003 * 109.50168 * 297.71975 * 12 11 9 43 43 H 1.08994 * 109.53931 * 177.61663 * 12 11 9 44 44 H 1.08998 * 109.46440 * 180.80511 * 13 12 11 45 45 H 1.09002 * 109.46197 * 60.83847 * 13 12 11 46 46 H 1.08997 * 109.46730 * 61.24775 * 15 14 13 47 47 H 1.08995 * 109.47147 * 181.25483 * 15 14 13 48 48 H 0.96999 * 119.99477 * 359.97438 * 18 16 15 49 49 H 0.97002 * 120.00408 * 180.02562 * 22 21 19 50 50 H 1.09004 * 109.46830 * 173.67981 * 29 27 14 51 51 H 1.08993 * 109.47518 * 293.68436 * 29 27 14 52 52 H 1.09005 * 109.46944 * 53.68494 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 3.2660 -1.3245 -0.9886 6 6 3.6694 -1.9988 -2.2744 7 8 2.9489 -1.9293 -3.2475 8 7 4.8309 -2.6792 -2.3431 9 6 5.2227 -3.3352 -3.5930 10 1 4.3349 -3.7149 -4.0986 11 6 5.9353 -2.3264 -4.4982 12 6 7.2122 -1.8434 -3.8048 13 6 8.1031 -3.0475 -3.4909 14 7 7.3766 -3.9822 -2.6221 15 6 8.2477 -5.0823 -2.1874 16 6 8.7727 -5.8147 -3.3953 17 8 8.3740 -5.5218 -4.5027 18 7 9.6851 -6.7951 -3.2450 19 6 10.1622 -7.4617 -4.3439 20 1 9.8074 -7.2010 -5.3300 21 6 11.1025 -8.4730 -4.1889 22 7 11.5341 -8.7907 -2.9890 23 14 11.7533 -9.3809 -5.6861 24 1 11.1128 -8.8382 -6.9111 25 1 13.2245 -9.1994 -5.7744 26 1 11.4393 -10.8271 -5.5632 27 6 6.1713 -4.4959 -3.2852 28 1 6.4517 -4.9921 -4.2144 29 6 5.4703 -5.4968 -2.3645 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 4.0199 -0.5873 -0.7124 38 1 3.1810 -2.0706 -0.1985 39 1 5.4073 -2.7344 -1.5648 40 1 6.1924 -2.8037 -5.4438 41 1 5.2783 -1.4769 -4.6846 42 1 6.9519 -1.3319 -2.8781 43 1 7.7463 -1.1569 -4.4617 44 1 9.0067 -2.7084 -2.9843 45 1 8.3743 -3.5504 -4.4191 46 1 9.0834 -4.6795 -1.6152 47 1 7.6787 -5.7715 -1.5635 48 1 10.0041 -7.0291 -2.3594 49 1 12.1908 -9.4964 -2.8808 50 1 4.5193 -5.7933 -2.8071 51 1 6.1012 -6.3762 -2.2362 52 1 5.2907 -5.0338 -1.3941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734450544.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:34 Heat of formation + Delta-G solvation = -120.400834 kcal Electronic energy + Delta-G solvation = -31165.749768 eV Core-core repulsion = 26972.140626 eV Total energy + Delta-G solvation = -4193.609142 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.43416 -39.32933 -38.25603 -37.26573 -34.53314 -33.73685 -33.09146 -32.90962 -31.41280 -31.12400 -28.20514 -27.55840 -27.22017 -26.29969 -24.60950 -22.70082 -21.64121 -21.47033 -20.80462 -19.47830 -18.91651 -17.85891 -17.38337 -17.19306 -16.27952 -15.98087 -15.72608 -15.32080 -15.10667 -14.77378 -14.73246 -14.41379 -14.22324 -13.91785 -13.77972 -13.55401 -13.39628 -13.08422 -12.88756 -12.76035 -12.53500 -12.42005 -12.25855 -11.93336 -11.83138 -11.77970 -11.70717 -11.61275 -11.32812 -11.19894 -11.05467 -10.97747 -10.48220 -10.41323 -10.36752 -10.31851 -10.01019 -9.94396 -9.70973 -9.51299 -9.29871 -8.88302 -8.05264 -7.48977 -6.50809 -3.92130 2.64847 2.76644 3.09106 3.21258 3.27900 3.76300 3.82518 4.10247 4.23429 4.51316 4.65431 4.75097 4.82336 4.86409 4.91424 4.95967 5.02663 5.05284 5.14690 5.22462 5.25129 5.35468 5.36629 5.45522 5.49922 5.54502 5.69920 5.73472 5.83217 5.84348 5.87671 5.92780 5.96194 5.98607 6.09300 6.15232 6.17663 6.22976 6.32655 6.37129 6.51889 6.61988 6.76716 6.86689 7.29757 7.40858 7.46411 7.64270 7.95956 8.30632 8.49955 9.07893 9.43718 9.93823 10.65652 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028427 B = 0.002081 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.736189 B =13452.137734 C =13630.478518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.078 3.922 3 C -0.176 4.176 4 O -0.357 6.357 5 C 0.044 3.956 6 C 0.510 3.490 7 O -0.528 6.528 8 N -0.707 5.707 9 C 0.162 3.838 10 H 0.087 0.913 11 C -0.131 4.131 12 C -0.108 4.108 13 C 0.035 3.965 14 N -0.510 5.510 15 C 0.037 3.963 16 C 0.406 3.594 17 O -0.594 6.594 18 N -0.556 5.556 19 C -0.302 4.302 20 H 0.103 0.897 21 C 0.024 3.976 22 N -0.898 5.898 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.281 1.281 27 C 0.057 3.943 28 H 0.097 0.903 29 C -0.144 4.144 30 H 0.065 0.935 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.407 0.593 40 H 0.073 0.927 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.079 0.921 46 H 0.087 0.913 47 H 0.093 0.907 48 H 0.393 0.607 49 H 0.272 0.728 50 H 0.056 0.944 51 H 0.059 0.941 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.728 15.071 10.207 22.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.021 3.979 3 C -0.234 4.234 4 O -0.276 6.276 5 C -0.036 4.036 6 C 0.295 3.705 7 O -0.404 6.404 8 N -0.360 5.360 9 C 0.057 3.943 10 H 0.105 0.895 11 C -0.169 4.169 12 C -0.146 4.146 13 C -0.092 4.092 14 N -0.234 5.234 15 C -0.094 4.094 16 C 0.192 3.808 17 O -0.481 6.481 18 N -0.191 5.191 19 C -0.432 4.432 20 H 0.121 0.879 21 C -0.178 4.178 22 N -0.538 5.538 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.207 1.207 27 C -0.051 4.051 28 H 0.115 0.885 29 C -0.201 4.201 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.242 0.758 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.082 0.918 45 H 0.097 0.903 46 H 0.105 0.895 47 H 0.111 0.889 48 H 0.226 0.774 49 H 0.082 0.918 50 H 0.075 0.925 51 H 0.078 0.922 52 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.635 15.424 9.067 23.114 hybrid contribution 1.492 -1.145 -0.118 1.884 sum -13.142 14.279 8.949 21.371 Atomic orbital electron populations 1.21850 0.93355 1.02901 1.02554 1.22165 0.95309 0.92494 0.87977 1.22315 1.01567 0.96766 1.02717 1.88071 1.34749 1.69677 1.35077 1.22246 0.88020 0.97059 0.96290 1.20205 0.81529 0.79303 0.89496 1.90718 1.52237 1.59756 1.37651 1.45888 1.21172 1.53338 1.15651 1.21035 0.96964 0.91986 0.84291 0.89517 1.21940 0.96939 0.99207 0.98851 1.21495 0.95783 0.97345 1.00015 1.22352 0.95563 0.92796 0.98533 1.62428 1.05989 1.14711 1.40286 1.22112 0.97303 0.93543 0.96484 1.21059 0.84270 0.84389 0.91070 1.90404 1.62263 1.68492 1.26928 1.42060 1.36188 1.30763 1.10056 1.19756 1.20607 1.13869 0.88934 0.87900 1.25289 0.96999 0.97566 0.97962 1.69613 1.31382 1.31315 1.21529 0.85816 0.78504 0.78973 0.81157 1.19230 1.20684 1.20684 1.22132 0.89675 0.93650 0.99666 0.88520 1.21857 1.00018 0.98717 0.99525 0.91626 0.91875 0.91210 0.92072 0.92451 0.91600 0.91585 0.90545 0.90464 0.75764 0.90880 0.91839 0.92142 0.92041 0.91795 0.90324 0.89459 0.88889 0.77417 0.91797 0.92523 0.92211 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.56 37.15 0.36 -0.70 16 2 C 0.08 0.62 3.34 -26.73 -0.09 0.53 16 3 C -0.18 -1.20 9.53 37.16 0.35 -0.85 16 4 O -0.36 -4.14 9.52 -55.14 -0.52 -4.66 16 5 C 0.04 0.42 6.23 36.00 0.22 0.64 16 6 C 0.51 6.57 7.87 -10.99 -0.09 6.48 16 7 O -0.53 -9.19 16.16 -14.36 -0.23 -9.42 16 8 N -0.71 -8.15 3.80 -53.73 -0.20 -8.36 16 9 C 0.16 2.22 2.26 -67.85 -0.15 2.06 16 10 H 0.09 1.31 7.58 -51.93 -0.39 0.92 16 11 C -0.13 -1.81 5.67 -26.61 -0.15 -1.96 16 12 C -0.11 -1.40 5.93 -26.65 -0.16 -1.56 16 13 C 0.04 0.53 4.98 -3.83 -0.02 0.52 16 14 N -0.51 -7.37 4.17 -228.12 -0.95 -8.32 16 15 C 0.04 0.59 5.47 -4.97 -0.03 0.57 16 16 C 0.41 8.72 7.18 -10.99 -0.08 8.64 16 17 O -0.59 -14.33 11.22 5.55 0.06 -14.27 16 18 N -0.56 -13.28 5.29 -10.97 -0.06 -13.33 16 19 C -0.30 -8.08 9.68 -14.94 -0.14 -8.23 16 20 H 0.10 2.91 7.16 -52.49 -0.38 2.54 16 21 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 22 N -0.90 -23.70 13.05 55.50 0.72 -22.97 16 23 Si 0.93 20.56 29.55 -169.99 -5.02 15.54 16 24 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 25 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.06 0.85 1.77 -67.72 -0.12 0.73 16 28 H 0.10 1.82 5.76 -51.93 -0.30 1.52 16 29 C -0.14 -1.91 8.28 37.16 0.31 -1.60 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.38 7.79 -51.93 -0.40 -0.02 16 34 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.57 7.87 -51.93 -0.41 0.16 16 38 H 0.08 0.56 8.08 -51.93 -0.42 0.14 16 39 H 0.41 4.03 7.94 -40.82 -0.32 3.71 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.06 0.72 7.73 -51.93 -0.40 0.32 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.94 8.12 -51.93 -0.42 0.51 16 45 H 0.08 1.50 5.61 -51.93 -0.29 1.21 16 46 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 47 H 0.09 1.36 6.04 -51.93 -0.31 1.04 16 48 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 49 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 50 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 51 H 0.06 0.86 6.59 -51.93 -0.34 0.52 16 52 H 0.06 0.66 7.61 -51.93 -0.40 0.26 16 LS Contribution 406.71 15.07 6.13 6.13 Total: -1.00 -31.39 406.71 -8.84 -40.24 By element: Atomic # 1 Polarization: 22.50 SS G_CDS: -8.88 Total: 13.62 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 0.12 Total: 5.81 kcal Atomic # 7 Polarization: -52.49 SS G_CDS: -0.49 Total: -52.98 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.69 Total: -28.35 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.39 -8.84 -40.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734450544.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.161 kcal (2) G-P(sol) polarization free energy of solvation -31.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds