Wall clock time and date at job start Wed Apr 1 2020 01:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46925 * 2 1 4 4 O 1.42900 * 109.47376 * 240.00040 * 2 1 3 5 5 C 1.42900 * 114.00080 * 210.00203 * 4 2 1 6 6 C 1.50692 * 109.47596 * 179.97438 * 5 4 2 7 7 O 1.21287 * 119.99702 * 359.97438 * 6 5 4 8 8 N 1.34778 * 120.00575 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00016 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.50647 * 325.08381 * 9 8 6 11 11 C 1.53123 * 109.50066 * 85.20121 * 9 8 6 12 12 C 1.53117 * 109.16409 * 62.28222 * 11 9 8 13 13 C 1.53043 * 109.27750 * 57.65281 * 12 11 9 14 14 N 1.46843 * 109.52204 * 300.82276 * 13 12 11 15 15 C 1.46905 * 110.99914 * 185.83765 * 14 13 12 16 16 C 1.50700 * 109.46976 * 301.25309 * 15 14 13 17 17 O 1.21291 * 119.99950 * 354.38197 * 16 15 14 18 18 N 1.34775 * 120.00199 * 174.38420 * 16 15 14 19 19 C 1.37093 * 120.00157 * 179.97438 * 18 16 15 20 20 H 1.07996 * 120.00620 * 0.02562 * 19 18 16 21 21 C 1.38950 * 119.99995 * 180.02562 * 19 18 16 22 22 N 1.31412 * 120.00234 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 120.00429 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.46665 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47352 * 119.99698 * 23 21 19 26 26 H 1.48498 * 109.47188 * 240.00137 * 23 21 19 27 27 C 1.46847 * 111.19897 * 61.74307 * 14 13 12 28 28 H 1.09000 * 109.45696 * 58.26810 * 27 14 13 29 29 C 1.53002 * 109.46069 * 178.23807 * 27 14 13 30 30 H 1.09004 * 109.46944 * 60.00655 * 1 2 3 31 31 H 1.09005 * 109.47130 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47549 * 300.00298 * 1 2 3 33 33 H 1.09006 * 109.46899 * 119.99891 * 2 1 3 34 34 H 1.09004 * 109.46607 * 179.97438 * 3 2 1 35 35 H 1.08994 * 109.46834 * 299.99548 * 3 2 1 36 36 H 1.09004 * 109.47031 * 59.99933 * 3 2 1 37 37 H 1.09005 * 109.46666 * 300.00004 * 5 4 2 38 38 H 1.08997 * 109.47530 * 59.99072 * 5 4 2 39 39 H 0.97003 * 119.99644 * 359.97438 * 8 6 5 40 40 H 1.09001 * 109.51921 * 182.19334 * 11 9 8 41 41 H 1.08998 * 109.51711 * 302.37742 * 11 9 8 42 42 H 1.09003 * 109.50168 * 297.71975 * 12 11 9 43 43 H 1.08994 * 109.53931 * 177.61663 * 12 11 9 44 44 H 1.08998 * 109.46440 * 180.80511 * 13 12 11 45 45 H 1.09002 * 109.46197 * 60.83847 * 13 12 11 46 46 H 1.08997 * 109.46730 * 61.24775 * 15 14 13 47 47 H 1.08995 * 109.47147 * 181.25483 * 15 14 13 48 48 H 0.96999 * 119.99477 * 359.97438 * 18 16 15 49 49 H 0.97002 * 120.00408 * 180.02562 * 22 21 19 50 50 H 1.09004 * 109.46830 * 173.67981 * 29 27 14 51 51 H 1.08993 * 109.47518 * 293.68436 * 29 27 14 52 52 H 1.09005 * 109.46944 * 53.68494 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 3.2660 -1.3245 -0.9886 6 6 3.6694 -1.9988 -2.2744 7 8 2.9489 -1.9293 -3.2475 8 7 4.8309 -2.6792 -2.3431 9 6 5.2227 -3.3352 -3.5930 10 1 4.3349 -3.7149 -4.0986 11 6 5.9353 -2.3264 -4.4982 12 6 7.2122 -1.8434 -3.8048 13 6 8.1031 -3.0475 -3.4909 14 7 7.3766 -3.9822 -2.6221 15 6 8.2477 -5.0823 -2.1874 16 6 8.7727 -5.8147 -3.3953 17 8 8.3740 -5.5218 -4.5027 18 7 9.6851 -6.7951 -3.2450 19 6 10.1622 -7.4617 -4.3439 20 1 9.8074 -7.2010 -5.3300 21 6 11.1025 -8.4730 -4.1889 22 7 11.5341 -8.7907 -2.9890 23 14 11.7533 -9.3809 -5.6861 24 1 11.1128 -8.8382 -6.9111 25 1 13.2245 -9.1994 -5.7744 26 1 11.4393 -10.8271 -5.5632 27 6 6.1713 -4.4959 -3.2852 28 1 6.4517 -4.9921 -4.2144 29 6 5.4703 -5.4968 -2.3645 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6765 1.9564 0.8900 37 1 4.0199 -0.5873 -0.7124 38 1 3.1810 -2.0706 -0.1985 39 1 5.4073 -2.7344 -1.5648 40 1 6.1924 -2.8037 -5.4438 41 1 5.2783 -1.4769 -4.6846 42 1 6.9519 -1.3319 -2.8781 43 1 7.7463 -1.1569 -4.4617 44 1 9.0067 -2.7084 -2.9843 45 1 8.3743 -3.5504 -4.4191 46 1 9.0834 -4.6795 -1.6152 47 1 7.6787 -5.7715 -1.5635 48 1 10.0041 -7.0291 -2.3594 49 1 12.1908 -9.4964 -2.8808 50 1 4.5193 -5.7933 -2.8071 51 1 6.1012 -6.3762 -2.2362 52 1 5.2907 -5.0338 -1.3941 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734450544.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:05:29 Heat of formation + Delta-G solvation = -142.468636 kcal Electronic energy + Delta-G solvation = -31166.706700 eV Core-core repulsion = 26972.140626 eV Total energy + Delta-G solvation = -4194.566073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.65154 -40.54994 -39.30187 -38.53990 -36.13544 -35.25575 -34.14517 -33.67496 -33.28320 -32.31440 -29.24730 -28.58407 -28.02815 -27.42254 -26.35838 -23.97181 -22.66988 -22.21034 -21.92214 -21.02582 -20.32875 -19.66394 -18.37531 -17.96027 -17.63575 -17.17523 -16.76446 -16.61906 -16.41905 -16.17929 -15.82155 -15.65217 -15.53293 -15.34586 -15.08858 -14.61801 -14.51272 -14.27383 -13.81707 -13.77881 -13.54989 -13.42656 -13.22900 -13.04610 -13.02906 -12.95044 -12.88951 -12.83706 -12.53761 -12.42544 -12.31787 -12.25556 -12.12473 -11.79867 -11.60412 -11.54250 -11.36087 -11.18455 -10.94904 -10.76231 -10.58547 -9.98114 -9.97754 -9.01621 -8.46702 -5.95734 1.33184 1.39542 1.52321 1.66742 1.90759 2.03880 2.27752 2.91095 3.12044 3.19917 3.28352 3.69204 3.84079 3.85723 4.01985 4.06707 4.14637 4.16109 4.27032 4.33008 4.37755 4.39151 4.42098 4.49250 4.59795 4.64881 4.72000 4.74928 4.78297 4.81941 4.85814 4.93054 4.94780 4.97641 5.04784 5.06883 5.12914 5.20822 5.29747 5.32207 5.36528 5.38549 5.43690 5.59440 5.91402 6.06877 6.11530 6.23492 6.59369 6.71498 7.12593 7.35049 7.56915 8.12128 8.68679 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028427 B = 0.002081 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.736189 B =13452.137734 C =13630.478518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 C -0.174 4.174 4 O -0.394 6.394 5 C 0.047 3.953 6 C 0.508 3.492 7 O -0.580 6.580 8 N -0.691 5.691 9 C 0.171 3.829 10 H 0.069 0.931 11 C -0.128 4.128 12 C -0.098 4.098 13 C 0.037 3.963 14 N -0.487 5.487 15 C 0.046 3.954 16 C 0.409 3.591 17 O -0.621 6.621 18 N -0.570 5.570 19 C -0.330 4.330 20 H 0.076 0.924 21 C -0.011 4.011 22 N -0.917 5.917 23 Si 0.987 3.013 24 H -0.276 1.276 25 H -0.271 1.271 26 H -0.272 1.272 27 C 0.063 3.937 28 H 0.053 0.947 29 C -0.138 4.138 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.093 0.907 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.048 0.952 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.419 0.581 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.036 0.964 46 H 0.113 0.887 47 H 0.116 0.884 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.057 0.943 51 H 0.047 0.953 52 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.746 16.163 13.045 24.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.313 6.313 5 C -0.032 4.032 6 C 0.295 3.705 7 O -0.459 6.459 8 N -0.345 5.345 9 C 0.065 3.935 10 H 0.087 0.913 11 C -0.167 4.167 12 C -0.135 4.135 13 C -0.091 4.091 14 N -0.210 5.210 15 C -0.085 4.085 16 C 0.196 3.804 17 O -0.509 6.509 18 N -0.207 5.207 19 C -0.460 4.460 20 H 0.094 0.906 21 C -0.211 4.211 22 N -0.558 5.558 23 Si 0.811 3.189 24 H -0.201 1.201 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.046 4.046 28 H 0.071 0.929 29 C -0.196 4.196 30 H 0.069 0.931 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.102 0.898 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.258 0.742 40 H 0.072 0.928 41 H 0.079 0.921 42 H 0.100 0.900 43 H 0.089 0.911 44 H 0.095 0.905 45 H 0.054 0.946 46 H 0.130 0.870 47 H 0.134 0.866 48 H 0.230 0.770 49 H 0.086 0.914 50 H 0.076 0.924 51 H 0.066 0.934 52 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.640 16.528 11.951 25.106 hybrid contribution 1.413 -1.409 -1.027 2.245 sum -13.227 15.119 10.924 22.866 Atomic orbital electron populations 1.21890 0.93272 1.02588 1.02982 1.22406 0.95506 0.92963 0.87664 1.22304 1.01783 0.96162 1.02885 1.88037 1.35661 1.70349 1.37296 1.22335 0.88204 0.98205 0.94444 1.20911 0.80809 0.78563 0.90207 1.90702 1.53764 1.61652 1.39822 1.45690 1.21185 1.52603 1.15050 1.20722 0.95858 0.91676 0.85258 0.91336 1.21888 0.97535 0.98943 0.98331 1.21430 0.94615 0.96472 1.01013 1.22313 0.96736 0.93320 0.96758 1.62528 1.05320 1.13701 1.39408 1.22235 0.98430 0.93729 0.94155 1.22198 0.82549 0.83185 0.92455 1.90430 1.62612 1.68881 1.29024 1.42122 1.37397 1.31766 1.09435 1.19633 1.22009 1.15441 0.88893 0.90631 1.25961 0.96820 0.97832 1.00536 1.69663 1.31749 1.31771 1.22644 0.84954 0.78121 0.78004 0.77771 1.20114 1.19662 1.19734 1.21974 0.90175 0.94240 0.98228 0.92927 1.21820 0.99523 0.97853 1.00401 0.93132 0.92553 0.88852 0.89796 0.92062 0.93233 0.89621 0.87797 0.87466 0.74241 0.92819 0.92069 0.89980 0.91122 0.90540 0.94571 0.86951 0.86596 0.77014 0.91351 0.92434 0.93370 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.56 71.98 0.69 -1.20 16 2 C 0.07 0.96 3.34 30.59 0.10 1.06 16 3 C -0.17 -1.96 9.53 71.98 0.69 -1.27 16 4 O -0.39 -8.44 9.52 -129.94 -1.24 -9.68 16 5 C 0.05 0.76 6.23 71.23 0.44 1.20 16 6 C 0.51 12.24 7.87 87.65 0.69 12.93 16 7 O -0.58 -20.23 16.16 15.99 0.26 -19.97 16 8 N -0.69 -14.47 3.80 -442.29 -1.68 -16.15 16 9 C 0.17 4.63 2.26 45.04 0.10 4.73 16 10 H 0.07 2.14 7.58 -2.39 -0.02 2.13 16 11 C -0.13 -3.56 5.67 30.67 0.17 -3.39 16 12 C -0.10 -2.38 5.93 30.65 0.18 -2.19 16 13 C 0.04 1.08 4.98 86.33 0.43 1.51 16 14 N -0.49 -13.23 4.17 -875.64 -3.65 -16.88 16 15 C 0.05 1.39 5.47 85.56 0.47 1.85 16 16 C 0.41 17.73 7.18 87.66 0.63 18.36 16 17 O -0.62 -31.22 11.22 -3.06 -0.03 -31.26 16 18 N -0.57 -27.71 5.29 -306.99 -1.62 -29.33 16 19 C -0.33 -18.16 9.68 84.04 0.81 -17.35 16 20 H 0.08 4.49 7.16 -2.91 -0.02 4.47 16 21 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 22 N -0.92 -48.34 13.05 21.66 0.28 -48.06 16 23 Si 0.99 42.50 29.55 68.60 2.03 44.53 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 26 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 27 C 0.06 1.85 1.77 44.94 0.08 1.92 16 28 H 0.05 2.07 5.76 -2.39 -0.01 2.06 16 29 C -0.14 -3.48 8.28 71.98 0.60 -2.89 16 30 H 0.05 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.08 0.73 7.79 -2.38 -0.02 0.71 16 34 H 0.06 0.63 7.87 -2.38 -0.02 0.61 16 35 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 37 H 0.10 1.10 7.87 -2.38 -0.02 1.08 16 38 H 0.11 1.08 8.08 -2.39 -0.02 1.06 16 39 H 0.42 6.73 7.94 -92.71 -0.74 5.99 16 40 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.08 1.69 7.73 -2.39 -0.02 1.67 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 2.08 8.12 -2.39 -0.02 2.06 16 45 H 0.04 1.41 5.61 -2.39 -0.01 1.40 16 46 H 0.11 2.94 8.14 -2.39 -0.02 2.92 16 47 H 0.12 3.06 6.04 -2.39 -0.01 3.05 16 48 H 0.40 18.32 7.90 -92.71 -0.73 17.58 16 49 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 50 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.05 1.33 6.59 -2.39 -0.02 1.31 16 52 H 0.08 1.67 7.61 -2.38 -0.02 1.65 16 Total: -1.00 -71.96 406.71 0.36 -71.60 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: -0.54 Total: 40.04 kcal Atomic # 6 Polarization: 8.59 SS G_CDS: 6.55 Total: 15.14 kcal Atomic # 7 Polarization: -103.74 SS G_CDS: -6.67 Total: -110.41 kcal Atomic # 8 Polarization: -59.89 SS G_CDS: -1.01 Total: -60.90 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -71.96 0.36 -71.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734450544.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.869 kcal (2) G-P(sol) polarization free energy of solvation -71.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds