Wall clock time and date at job start Wed Apr 1 2020 01:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.52165 * 2 1 4 4 C 1.53099 * 109.52150 * 120.11985 * 2 1 3 5 5 O 1.42900 * 109.41113 * 62.36256 * 4 2 1 6 6 C 1.42903 * 114.10094 * 61.15932 * 5 4 2 7 7 C 1.53093 * 109.41472 * 298.84001 * 6 5 4 8 8 C 1.53175 * 109.52809 * 239.86837 * 2 1 3 9 9 H 1.08990 * 109.54762 * 177.14555 * 8 2 1 10 10 C 1.50704 * 109.53977 * 56.87856 * 8 2 1 11 11 O 1.21281 * 119.99873 * 11.32654 * 10 8 2 12 12 N 1.34778 * 120.00021 * 191.32568 * 10 8 2 13 13 C 1.46496 * 120.00043 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47217 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47405 * 179.97438 * 14 13 12 16 16 N 1.46896 * 109.47377 * 180.02562 * 15 14 13 17 17 C 1.46900 * 110.99863 * 66.04674 * 16 15 14 18 18 C 1.46903 * 110.99999 * 190.00467 * 16 15 14 19 19 C 1.50699 * 109.46927 * 170.00243 * 18 16 15 20 20 O 1.21291 * 120.00400 * 359.97438 * 19 18 16 21 21 N 1.34779 * 119.99890 * 180.02562 * 19 18 16 22 22 C 1.37098 * 120.00129 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99817 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00011 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00135 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99901 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47076 * 90.00033 * 26 24 22 28 28 H 1.48503 * 109.47116 * 209.99942 * 26 24 22 29 29 H 1.48494 * 109.47306 * 329.99545 * 26 24 22 30 30 H 1.08999 * 109.47460 * 294.14474 * 1 2 3 31 31 H 1.08997 * 109.47110 * 54.15276 * 1 2 3 32 32 H 1.09006 * 109.47169 * 174.14495 * 1 2 3 33 33 H 1.08999 * 109.47821 * 182.34391 * 4 2 1 34 34 H 1.08994 * 109.48216 * 302.38162 * 4 2 1 35 35 H 1.09008 * 109.47839 * 58.82099 * 6 5 4 36 36 H 1.09003 * 109.48359 * 178.85904 * 6 5 4 37 37 H 1.09000 * 109.52500 * 177.51514 * 7 6 5 38 38 H 1.08997 * 109.52003 * 297.63716 * 7 6 5 39 39 H 0.97004 * 120.00154 * 359.97438 * 12 10 8 40 40 H 1.09001 * 109.47568 * 300.00246 * 13 12 10 41 41 H 1.09000 * 109.47163 * 60.00228 * 13 12 10 42 42 H 1.08992 * 109.47253 * 300.00595 * 14 13 12 43 43 H 1.09010 * 109.46614 * 60.00229 * 14 13 12 44 44 H 1.09001 * 109.47088 * 300.00957 * 15 14 13 45 45 H 1.08999 * 109.46781 * 59.99819 * 15 14 13 46 46 H 1.08997 * 109.47194 * 60.00234 * 17 16 15 47 47 H 1.08997 * 109.46771 * 179.97438 * 17 16 15 48 48 H 1.08992 * 109.47184 * 299.99843 * 17 16 15 49 49 H 1.08999 * 109.46695 * 289.99544 * 18 16 15 50 50 H 1.08993 * 109.47080 * 49.99568 * 18 16 15 51 51 H 0.97003 * 120.00090 * 359.97438 * 21 19 18 52 52 H 0.96995 * 120.00096 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7241 1.2481 5 8 1.6110 -2.0863 1.2169 6 6 2.0995 -2.8272 0.0968 7 6 1.5903 -2.1876 -1.1976 8 6 2.0420 -0.7247 -1.2486 9 1 3.1307 -0.6809 -1.2749 10 6 1.4790 -0.0646 -2.4809 11 8 0.9136 1.0045 -2.3915 12 7 1.6041 -0.6625 -3.6823 13 6 1.0564 -0.0211 -4.8802 14 6 1.3321 -0.9010 -6.1011 15 6 0.7596 -0.2315 -7.3521 16 7 1.0238 -1.0765 -8.5242 17 6 0.2854 -2.3435 -8.4369 18 6 0.7036 -0.3652 -9.7690 19 6 1.2116 -1.1581 -10.9455 20 8 1.7845 -2.2118 -10.7649 21 7 1.0303 -0.6958 -12.1985 22 6 1.4929 -1.4168 -13.2689 23 1 2.0030 -2.3550 -13.1080 24 6 1.3055 -0.9404 -14.5606 25 7 0.6844 0.2010 -14.7564 26 14 1.9365 -1.9225 -16.0190 27 1 0.8809 -2.8606 -16.4780 28 1 2.2899 -0.9957 -17.1242 29 1 3.1405 -2.6917 -15.6141 30 1 -0.3634 0.4203 0.9377 31 1 -0.3633 0.6018 -0.8330 32 1 -0.3634 -1.0224 -0.1048 33 1 3.1307 -0.6875 1.2688 34 1 1.6443 -0.2377 2.1390 35 1 3.1895 -2.8181 0.1024 36 1 1.7441 -3.8558 0.1582 37 1 1.9976 -2.7247 -2.0541 38 1 0.5016 -2.2338 -1.2229 39 1 2.0567 -1.5174 -3.7539 40 1 -0.0192 0.1107 -4.7623 41 1 1.5284 0.9514 -5.0196 42 1 2.4077 -1.0324 -6.2188 43 1 0.8603 -1.8738 -5.9619 44 1 -0.3161 -0.1004 -7.2340 45 1 1.2309 0.7414 -7.4914 46 1 -0.7839 -2.1382 -8.3880 47 1 0.4987 -2.9497 -9.3174 48 1 0.5933 -2.8825 -7.5410 49 1 -0.3767 -0.2450 -9.8511 50 1 1.1786 0.6157 -9.7594 51 1 0.5725 0.1471 -12.3430 52 1 0.5539 0.5337 -15.6581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752058932.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:18 Heat of formation + Delta-G solvation = -124.836977 kcal Electronic energy + Delta-G solvation = -29458.360013 eV Core-core repulsion = 25264.558506 eV Total energy + Delta-G solvation = -4193.801507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.00448 -39.09448 -38.65824 -36.97893 -35.37932 -34.61701 -33.87593 -32.58659 -31.41132 -31.18756 -28.05124 -27.64819 -26.69921 -25.81065 -24.65307 -23.60118 -22.76565 -21.36491 -20.71126 -19.42697 -19.14527 -17.86033 -17.65099 -16.80394 -16.53829 -16.23792 -16.09654 -15.74593 -15.56652 -15.29275 -14.84540 -14.79031 -14.60691 -14.32497 -14.00224 -13.92239 -13.62638 -13.44298 -13.40370 -13.01339 -12.46973 -12.32151 -12.15152 -12.02687 -11.89084 -11.85116 -11.73446 -11.51687 -11.47303 -11.26533 -11.26099 -11.02882 -10.93149 -10.76698 -10.74627 -10.39727 -10.33762 -10.22400 -9.73080 -9.48398 -9.32451 -8.46592 -7.98593 -7.86845 -6.42196 -3.83081 2.31718 2.81340 3.17113 3.25877 3.31666 3.41993 3.89773 3.96526 4.02834 4.19449 4.23562 4.24738 4.44497 4.65800 4.67790 4.78496 4.89003 4.94557 5.02708 5.03061 5.07377 5.09538 5.17940 5.24116 5.24770 5.29679 5.38405 5.39996 5.48191 5.56725 5.59141 5.67409 5.71802 5.72872 5.88494 5.90752 5.95483 5.97668 6.04025 6.09577 6.20591 6.27852 6.53472 6.72041 7.16601 7.24862 7.37331 7.54647 7.91668 8.05927 8.61422 9.17637 9.54095 10.05917 10.75548 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.035126 B = 0.001454 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.936253 B =19246.783749 C =19714.251569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.106 4.106 3 H 0.088 0.912 4 C 0.064 3.936 5 O -0.379 6.379 6 C 0.062 3.938 7 C -0.152 4.152 8 C -0.106 4.106 9 H 0.100 0.900 10 C 0.519 3.481 11 O -0.534 6.534 12 N -0.728 5.728 13 C 0.120 3.880 14 C -0.127 4.127 15 C 0.058 3.942 16 N -0.519 5.519 17 C 0.020 3.980 18 C 0.046 3.954 19 C 0.444 3.556 20 O -0.578 6.578 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.055 0.945 33 H 0.051 0.949 34 H 0.097 0.903 35 H 0.053 0.947 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.400 0.600 40 H 0.066 0.934 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.033 0.967 45 H 0.075 0.925 46 H 0.013 0.987 47 H 0.095 0.905 48 H 0.060 0.940 49 H 0.047 0.953 50 H 0.088 0.912 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.836 -1.094 29.584 29.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.125 4.125 3 H 0.106 0.894 4 C -0.012 4.012 5 O -0.297 6.297 6 C -0.015 4.015 7 C -0.190 4.190 8 C -0.127 4.127 9 H 0.118 0.882 10 C 0.305 3.695 11 O -0.411 6.411 12 N -0.380 5.380 13 C -0.004 4.004 14 C -0.165 4.165 15 C -0.071 4.071 16 N -0.243 5.243 17 C -0.127 4.127 18 C -0.086 4.086 19 C 0.229 3.771 20 O -0.463 6.463 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.235 0.765 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.051 0.949 45 H 0.094 0.906 46 H 0.032 0.968 47 H 0.114 0.886 48 H 0.079 0.921 49 H 0.065 0.935 50 H 0.106 0.894 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 1.147 -1.112 29.692 29.735 hybrid contribution -0.438 0.092 -1.282 1.358 sum 0.709 -1.020 28.410 28.437 Atomic orbital electron populations 1.21942 0.93788 1.02324 1.02779 1.21549 0.98051 0.99967 0.92966 0.89414 1.22692 0.98332 0.82237 0.97975 1.87953 1.74097 1.22482 1.45210 1.22568 0.98133 0.95762 0.85005 1.22290 1.03232 0.94025 0.99478 1.21420 1.01718 0.96046 0.93546 0.88213 1.20484 0.79376 0.85295 0.84350 1.90676 1.42478 1.21865 1.86096 1.46062 1.59669 1.25026 1.07241 1.21345 0.99094 0.96660 0.83333 1.21775 1.03019 0.99071 0.92665 1.22001 0.98331 0.96814 0.89951 1.61544 1.57928 1.04546 1.00252 1.22573 0.93831 0.92253 1.04091 1.21865 0.98944 0.97789 0.89971 1.19735 0.85615 0.87993 0.83721 1.90477 1.46392 1.24488 1.84900 1.41873 1.51473 1.22396 1.04365 1.19697 1.34136 1.05115 0.83936 0.87915 1.25258 0.97251 0.96481 0.98945 1.69610 1.42136 1.19589 1.22975 0.85857 0.79211 0.78991 0.80220 1.20447 1.20933 1.19424 0.92834 0.90605 0.92570 0.93083 0.88459 0.92890 0.88420 0.90302 0.89939 0.76493 0.91519 0.91274 0.90197 0.91129 0.94902 0.90604 0.96806 0.88617 0.92143 0.93455 0.89377 0.77488 0.91880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 8.40 37.16 0.31 -0.97 16 2 C -0.11 -0.76 2.39 -90.48 -0.22 -0.98 16 3 H 0.09 0.68 8.08 -51.93 -0.42 0.26 16 4 C 0.06 0.39 6.25 37.21 0.23 0.62 16 5 O -0.38 -2.85 10.30 -35.23 -0.36 -3.21 16 6 C 0.06 0.32 6.84 37.21 0.25 0.58 16 7 C -0.15 -0.79 4.81 -26.59 -0.13 -0.92 16 8 C -0.11 -0.69 2.46 -91.58 -0.23 -0.92 16 9 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 10 C 0.52 4.80 6.80 -10.98 -0.07 4.73 16 11 O -0.53 -6.92 14.00 5.56 0.08 -6.84 16 12 N -0.73 -5.68 5.40 -60.29 -0.33 -6.01 16 13 C 0.12 1.08 5.67 -4.04 -0.02 1.06 16 14 C -0.13 -1.21 5.25 -26.73 -0.14 -1.35 16 15 C 0.06 0.69 4.96 -3.83 -0.02 0.67 16 16 N -0.52 -8.34 4.50 -244.38 -1.10 -9.44 16 17 C 0.02 0.32 8.96 60.06 0.54 0.86 16 18 C 0.05 0.81 5.45 -4.98 -0.03 0.78 16 19 C 0.44 10.38 7.47 -10.99 -0.08 10.29 16 20 O -0.58 -15.35 13.91 5.55 0.08 -15.28 16 21 N -0.56 -14.22 5.29 -10.97 -0.06 -14.28 16 22 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 26 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 27 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 28 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 29 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.08 0.81 5.87 -51.93 -0.30 0.51 16 32 H 0.06 0.48 6.04 -51.93 -0.31 0.16 16 33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.22 8.14 -51.92 -0.42 -0.21 16 36 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.08 0.27 7.18 -51.93 -0.37 -0.10 16 38 H 0.08 0.53 6.51 -51.93 -0.34 0.19 16 39 H 0.40 2.20 7.36 -40.82 -0.30 1.90 16 40 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.65 6.55 -51.92 -0.34 0.31 16 44 H 0.03 0.37 8.12 -51.93 -0.42 -0.05 16 45 H 0.08 0.86 7.93 -51.93 -0.41 0.45 16 46 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 47 H 0.10 1.85 5.82 -51.93 -0.30 1.55 16 48 H 0.06 0.80 6.47 -51.93 -0.34 0.46 16 49 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 50 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 51 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 52 H 0.27 6.96 8.31 -40.82 -0.34 6.63 16 LS Contribution 404.98 15.07 6.10 6.10 Total: -1.00 -33.29 404.98 -8.48 -41.77 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: -8.76 Total: 8.47 kcal Atomic # 6 Polarization: 6.35 SS G_CDS: 0.16 Total: 6.51 kcal Atomic # 7 Polarization: -52.68 SS G_CDS: -0.76 Total: -53.44 kcal Atomic # 8 Polarization: -25.12 SS G_CDS: -0.21 Total: -25.33 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.29 -8.48 -41.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752058932.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.064 kcal (2) G-P(sol) polarization free energy of solvation -33.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds