Wall clock time and date at job start Wed Apr 1 2020 01:38:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.52165 * 2 1 4 4 C 1.53099 * 109.52150 * 120.11985 * 2 1 3 5 5 O 1.42900 * 109.41113 * 62.36256 * 4 2 1 6 6 C 1.42903 * 114.10094 * 61.15932 * 5 4 2 7 7 C 1.53093 * 109.41472 * 298.84001 * 6 5 4 8 8 C 1.53175 * 109.52809 * 239.86837 * 2 1 3 9 9 H 1.08990 * 109.54762 * 177.14555 * 8 2 1 10 10 C 1.50704 * 109.53977 * 56.87856 * 8 2 1 11 11 O 1.21281 * 119.99873 * 11.32654 * 10 8 2 12 12 N 1.34778 * 120.00021 * 191.32568 * 10 8 2 13 13 C 1.46496 * 120.00043 * 179.97438 * 12 10 8 14 14 C 1.53001 * 109.47217 * 179.97438 * 13 12 10 15 15 C 1.53001 * 109.47405 * 179.97438 * 14 13 12 16 16 N 1.46896 * 109.47377 * 180.02562 * 15 14 13 17 17 C 1.46900 * 110.99863 * 66.04674 * 16 15 14 18 18 C 1.46903 * 110.99999 * 190.00467 * 16 15 14 19 19 C 1.50699 * 109.46927 * 170.00243 * 18 16 15 20 20 O 1.21291 * 120.00400 * 359.97438 * 19 18 16 21 21 N 1.34779 * 119.99890 * 180.02562 * 19 18 16 22 22 C 1.37098 * 120.00129 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99817 * 359.97438 * 22 21 19 24 24 C 1.38946 * 120.00011 * 179.97438 * 22 21 19 25 25 N 1.31411 * 120.00135 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 119.99901 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47076 * 90.00033 * 26 24 22 28 28 H 1.48503 * 109.47116 * 209.99942 * 26 24 22 29 29 H 1.48494 * 109.47306 * 329.99545 * 26 24 22 30 30 H 1.08999 * 109.47460 * 294.14474 * 1 2 3 31 31 H 1.08997 * 109.47110 * 54.15276 * 1 2 3 32 32 H 1.09006 * 109.47169 * 174.14495 * 1 2 3 33 33 H 1.08999 * 109.47821 * 182.34391 * 4 2 1 34 34 H 1.08994 * 109.48216 * 302.38162 * 4 2 1 35 35 H 1.09008 * 109.47839 * 58.82099 * 6 5 4 36 36 H 1.09003 * 109.48359 * 178.85904 * 6 5 4 37 37 H 1.09000 * 109.52500 * 177.51514 * 7 6 5 38 38 H 1.08997 * 109.52003 * 297.63716 * 7 6 5 39 39 H 0.97004 * 120.00154 * 359.97438 * 12 10 8 40 40 H 1.09001 * 109.47568 * 300.00246 * 13 12 10 41 41 H 1.09000 * 109.47163 * 60.00228 * 13 12 10 42 42 H 1.08992 * 109.47253 * 300.00595 * 14 13 12 43 43 H 1.09010 * 109.46614 * 60.00229 * 14 13 12 44 44 H 1.09001 * 109.47088 * 300.00957 * 15 14 13 45 45 H 1.08999 * 109.46781 * 59.99819 * 15 14 13 46 46 H 1.08997 * 109.47194 * 60.00234 * 17 16 15 47 47 H 1.08997 * 109.46771 * 179.97438 * 17 16 15 48 48 H 1.08992 * 109.47184 * 299.99843 * 17 16 15 49 49 H 1.08999 * 109.46695 * 289.99544 * 18 16 15 50 50 H 1.08993 * 109.47080 * 49.99568 * 18 16 15 51 51 H 0.97003 * 120.00090 * 359.97438 * 21 19 18 52 52 H 0.96995 * 120.00096 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0415 -0.7241 1.2481 5 8 1.6110 -2.0863 1.2169 6 6 2.0995 -2.8272 0.0968 7 6 1.5903 -2.1876 -1.1976 8 6 2.0420 -0.7247 -1.2486 9 1 3.1307 -0.6809 -1.2749 10 6 1.4790 -0.0646 -2.4809 11 8 0.9136 1.0045 -2.3915 12 7 1.6041 -0.6625 -3.6823 13 6 1.0564 -0.0211 -4.8802 14 6 1.3321 -0.9010 -6.1011 15 6 0.7596 -0.2315 -7.3521 16 7 1.0238 -1.0765 -8.5242 17 6 0.2854 -2.3435 -8.4369 18 6 0.7036 -0.3652 -9.7690 19 6 1.2116 -1.1581 -10.9455 20 8 1.7845 -2.2118 -10.7649 21 7 1.0303 -0.6958 -12.1985 22 6 1.4929 -1.4168 -13.2689 23 1 2.0030 -2.3550 -13.1080 24 6 1.3055 -0.9404 -14.5606 25 7 0.6844 0.2010 -14.7564 26 14 1.9365 -1.9225 -16.0190 27 1 0.8809 -2.8606 -16.4780 28 1 2.2899 -0.9957 -17.1242 29 1 3.1405 -2.6917 -15.6141 30 1 -0.3634 0.4203 0.9377 31 1 -0.3633 0.6018 -0.8330 32 1 -0.3634 -1.0224 -0.1048 33 1 3.1307 -0.6875 1.2688 34 1 1.6443 -0.2377 2.1390 35 1 3.1895 -2.8181 0.1024 36 1 1.7441 -3.8558 0.1582 37 1 1.9976 -2.7247 -2.0541 38 1 0.5016 -2.2338 -1.2229 39 1 2.0567 -1.5174 -3.7539 40 1 -0.0192 0.1107 -4.7623 41 1 1.5284 0.9514 -5.0196 42 1 2.4077 -1.0324 -6.2188 43 1 0.8603 -1.8738 -5.9619 44 1 -0.3161 -0.1004 -7.2340 45 1 1.2309 0.7414 -7.4914 46 1 -0.7839 -2.1382 -8.3880 47 1 0.4987 -2.9497 -9.3174 48 1 0.5933 -2.8825 -7.5410 49 1 -0.3767 -0.2450 -9.8511 50 1 1.1786 0.6157 -9.7594 51 1 0.5725 0.1471 -12.3430 52 1 0.5539 0.5337 -15.6581 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752058932.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:17 Heat of formation + Delta-G solvation = -150.258552 kcal Electronic energy + Delta-G solvation = -29459.462376 eV Core-core repulsion = 25264.558506 eV Total energy + Delta-G solvation = -4194.903869 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.61516 -40.38718 -39.65572 -38.26944 -36.33927 -35.79228 -35.19987 -33.31740 -33.17504 -32.11869 -29.40490 -28.42658 -27.52894 -26.85328 -26.12816 -24.11140 -23.81274 -22.16236 -21.57827 -20.96671 -19.98913 -19.83638 -18.26267 -17.86736 -17.36262 -17.12001 -16.83304 -16.70598 -16.57683 -16.40665 -16.12362 -15.95288 -15.67041 -15.42342 -15.08847 -15.02409 -14.79706 -14.48310 -14.46850 -13.75775 -13.60967 -13.47503 -13.33487 -13.03044 -12.95597 -12.78936 -12.71274 -12.54167 -12.51237 -12.39372 -12.36472 -12.30773 -12.11587 -12.08736 -11.63950 -11.52088 -11.44746 -11.30204 -10.92579 -10.34482 -10.25418 -10.04420 -9.98940 -9.19839 -8.45531 -5.94189 1.38537 1.42249 1.54966 1.61876 2.06838 2.12838 2.30111 2.81545 3.01646 3.21422 3.43635 3.50614 3.68643 3.76541 3.95880 3.98072 4.04523 4.13049 4.19222 4.25153 4.33022 4.40304 4.49126 4.50871 4.55229 4.57551 4.60905 4.63765 4.65428 4.70559 4.75799 4.76416 4.80272 4.82632 4.93222 5.08360 5.11174 5.17307 5.20142 5.26131 5.30196 5.39487 5.42179 5.50737 5.89149 6.08012 6.23210 6.30524 6.54606 6.61977 7.14226 7.25191 7.57983 8.13760 8.71880 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.035126 B = 0.001454 C = 0.001420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 796.936253 B =19246.783749 C =19714.251569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 H 0.079 0.921 4 C 0.067 3.933 5 O -0.400 6.400 6 C 0.058 3.942 7 C -0.147 4.147 8 C -0.101 4.101 9 H 0.121 0.879 10 C 0.515 3.485 11 O -0.576 6.576 12 N -0.718 5.718 13 C 0.127 3.873 14 C -0.113 4.113 15 C 0.057 3.943 16 N -0.537 5.537 17 C 0.025 3.975 18 C 0.056 3.944 19 C 0.441 3.559 20 O -0.613 6.613 21 N -0.576 5.576 22 C -0.332 4.332 23 H 0.080 0.920 24 C -0.013 4.013 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.271 1.271 28 H -0.272 1.272 29 H -0.273 1.273 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.068 0.932 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.414 0.586 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.077 0.923 43 H 0.078 0.922 44 H 0.044 0.956 45 H 0.082 0.918 46 H 0.026 0.974 47 H 0.053 0.947 48 H 0.085 0.915 49 H 0.065 0.935 50 H 0.109 0.891 51 H 0.395 0.605 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.467 -1.572 30.501 30.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.097 0.903 4 C -0.010 4.010 5 O -0.319 6.319 6 C -0.018 4.018 7 C -0.185 4.185 8 C -0.122 4.122 9 H 0.139 0.861 10 C 0.303 3.697 11 O -0.456 6.456 12 N -0.371 5.371 13 C 0.003 3.997 14 C -0.151 4.151 15 C -0.071 4.071 16 N -0.261 5.261 17 C -0.123 4.123 18 C -0.075 4.075 19 C 0.229 3.771 20 O -0.499 6.499 21 N -0.213 5.213 22 C -0.462 4.462 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.197 1.197 28 H -0.196 1.196 29 H -0.198 1.198 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.072 0.928 33 H 0.086 0.914 34 H 0.119 0.881 35 H 0.087 0.913 36 H 0.125 0.875 37 H 0.119 0.881 38 H 0.086 0.914 39 H 0.251 0.749 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.062 0.938 45 H 0.101 0.899 46 H 0.045 0.955 47 H 0.072 0.928 48 H 0.103 0.897 49 H 0.083 0.917 50 H 0.127 0.873 51 H 0.229 0.771 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.778 -1.600 30.622 30.715 hybrid contribution -0.652 0.238 -1.502 1.655 sum 1.126 -1.362 29.120 29.173 Atomic orbital electron populations 1.21860 0.95087 1.01571 1.01815 1.21539 0.96936 0.99935 0.94171 0.90251 1.22719 0.99247 0.81662 0.97343 1.87929 1.74706 1.23015 1.46239 1.22734 0.99104 0.95901 0.84085 1.22276 1.02393 0.93191 1.00636 1.21442 1.02676 0.96468 0.91640 0.86139 1.20995 0.78662 0.84804 0.85271 1.90665 1.44399 1.23825 1.86715 1.45970 1.59169 1.25379 1.06555 1.21162 0.98640 0.96300 0.83598 1.21618 1.02731 0.99145 0.91610 1.22090 0.99328 0.96630 0.89005 1.61513 1.58610 1.05191 1.00773 1.22463 0.94674 0.91942 1.03217 1.21744 0.99833 0.97509 0.88397 1.20777 0.84087 0.87706 0.84544 1.90455 1.47645 1.26230 1.85611 1.41951 1.52091 1.22531 1.04748 1.19666 1.35741 1.05235 0.85564 0.90241 1.26031 0.96991 0.97387 1.00896 1.69673 1.42330 1.20375 1.23866 0.84925 0.78530 0.77814 0.77051 1.19672 1.19644 1.19754 0.92540 0.93100 0.92790 0.91426 0.88063 0.91294 0.87474 0.88105 0.91432 0.74901 0.92217 0.92111 0.90395 0.90357 0.93820 0.89919 0.95519 0.92795 0.89680 0.91667 0.87335 0.77090 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 8.40 71.98 0.60 -1.90 16 2 C -0.11 -1.44 2.39 -10.70 -0.03 -1.47 16 3 H 0.08 1.20 8.08 -2.39 -0.02 1.18 16 4 C 0.07 0.70 6.25 72.02 0.45 1.15 16 5 O -0.40 -5.32 10.30 -148.98 -1.53 -6.86 16 6 C 0.06 0.46 6.84 72.01 0.49 0.95 16 7 C -0.15 -1.21 4.81 30.69 0.15 -1.06 16 8 C -0.10 -1.15 2.46 -11.42 -0.03 -1.17 16 9 H 0.12 0.90 8.14 -2.39 -0.02 0.88 16 10 C 0.52 9.01 6.80 87.66 0.60 9.61 16 11 O -0.58 -15.00 14.00 -3.03 -0.04 -15.04 16 12 N -0.72 -9.91 5.40 -463.06 -2.50 -12.41 16 13 C 0.13 2.10 5.67 86.38 0.49 2.59 16 14 C -0.11 -1.89 5.25 30.59 0.16 -1.73 16 15 C 0.06 1.23 4.96 86.30 0.43 1.66 16 16 N -0.54 -16.39 4.50 -927.09 -4.17 -20.56 16 17 C 0.02 0.75 8.96 127.69 1.14 1.89 16 18 C 0.06 1.92 5.45 85.56 0.47 2.39 16 19 C 0.44 20.85 7.47 87.66 0.66 21.50 16 20 O -0.61 -33.35 13.91 -3.06 -0.04 -33.39 16 21 N -0.58 -29.50 5.29 -306.99 -1.62 -31.12 16 22 C -0.33 -18.84 9.68 84.04 0.81 -18.02 16 23 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 24 C -0.01 -0.72 5.50 84.93 0.47 -0.25 16 25 N -0.92 -49.73 13.05 21.66 0.28 -49.45 16 26 Si 0.99 42.82 29.55 68.60 2.03 44.84 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 29 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 30 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.05 1.13 5.87 -2.39 -0.01 1.12 16 32 H 0.05 0.92 6.04 -2.38 -0.01 0.91 16 33 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 36 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 37 H 0.10 0.37 7.18 -2.39 -0.02 0.36 16 38 H 0.07 0.78 6.51 -2.39 -0.02 0.77 16 39 H 0.41 3.44 7.36 -92.71 -0.68 2.75 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 43 H 0.08 1.21 6.55 -2.38 -0.02 1.20 16 44 H 0.04 0.87 8.12 -2.39 -0.02 0.85 16 45 H 0.08 1.68 7.93 -2.39 -0.02 1.66 16 46 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.05 2.10 5.82 -2.39 -0.01 2.09 16 48 H 0.08 2.08 6.47 -2.39 -0.02 2.06 16 49 H 0.07 2.01 8.12 -2.39 -0.02 1.99 16 50 H 0.11 3.27 7.93 -2.39 -0.02 3.25 16 51 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 52 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 Total: -1.00 -73.67 404.98 -1.22 -74.89 By element: Atomic # 1 Polarization: 33.44 SS G_CDS: -0.48 Total: 32.95 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: 6.86 Total: 16.15 kcal Atomic # 7 Polarization: -105.54 SS G_CDS: -8.01 Total: -113.55 kcal Atomic # 8 Polarization: -53.67 SS G_CDS: -1.62 Total: -55.29 kcal Atomic # 14 Polarization: 42.82 SS G_CDS: 2.03 Total: 44.84 kcal Total: -73.67 -1.22 -74.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752058932.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.371 kcal (2) G-P(sol) polarization free energy of solvation -73.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds