Wall clock time and date at job start Wed Apr 1 2020 01:38:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 109.52399 * 2 1 4 4 C 1.53095 * 109.57529 * 120.16722 * 2 1 3 5 5 O 1.42895 * 109.41568 * 177.54518 * 4 2 1 6 6 C 1.42902 * 114.09785 * 298.83742 * 5 4 2 7 7 C 1.53095 * 109.41528 * 61.15752 * 6 5 4 8 8 C 1.53176 * 109.16286 * 302.39400 * 7 6 5 9 9 H 1.08999 * 109.54288 * 297.11123 * 8 7 6 10 10 C 1.50705 * 109.54206 * 176.84452 * 8 7 6 11 11 O 1.21279 * 120.00125 * 240.00346 * 10 8 7 12 12 N 1.34777 * 119.99798 * 59.99774 * 10 8 7 13 13 C 1.46496 * 119.99800 * 179.97438 * 12 10 8 14 14 C 1.53000 * 109.46892 * 180.02562 * 13 12 10 15 15 C 1.53003 * 109.47036 * 179.97438 * 14 13 12 16 16 N 1.46900 * 109.47149 * 180.02562 * 15 14 13 17 17 C 1.46901 * 111.00358 * 66.04454 * 16 15 14 18 18 C 1.46900 * 111.00063 * 190.00137 * 16 15 14 19 19 C 1.50696 * 109.47609 * 169.99681 * 18 16 15 20 20 O 1.21301 * 119.99737 * 0.02562 * 19 18 16 21 21 N 1.34778 * 120.00661 * 179.97438 * 19 18 16 22 22 C 1.37093 * 120.00331 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99751 * 0.02562 * 22 21 19 24 24 C 1.38946 * 120.00050 * 180.02562 * 22 21 19 25 25 N 1.31406 * 120.00056 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99906 * 180.02562 * 24 22 21 27 27 H 1.48500 * 109.47101 * 0.02562 * 26 24 22 28 28 H 1.48501 * 109.46899 * 120.00329 * 26 24 22 29 29 H 1.48497 * 109.47144 * 240.00203 * 26 24 22 30 30 H 1.08997 * 109.47354 * 180.11919 * 1 2 3 31 31 H 1.08998 * 109.47229 * 300.11903 * 1 2 3 32 32 H 1.08996 * 109.47186 * 60.11774 * 1 2 3 33 33 H 1.09010 * 109.47455 * 297.52624 * 4 2 1 34 34 H 1.09000 * 109.48358 * 57.54687 * 4 2 1 35 35 H 1.08995 * 109.47976 * 301.17466 * 6 5 4 36 36 H 1.09004 * 109.48145 * 181.14340 * 6 5 4 37 37 H 1.09001 * 109.52293 * 182.48153 * 7 6 5 38 38 H 1.09007 * 109.52035 * 62.29920 * 7 6 5 39 39 H 0.96997 * 119.99863 * 0.02562 * 12 10 8 40 40 H 1.09004 * 109.47479 * 300.00122 * 13 12 10 41 41 H 1.08997 * 109.47358 * 60.00521 * 13 12 10 42 42 H 1.08994 * 109.47730 * 300.00058 * 14 13 12 43 43 H 1.09001 * 109.47504 * 60.00313 * 14 13 12 44 44 H 1.09004 * 109.47411 * 299.99974 * 15 14 13 45 45 H 1.08997 * 109.47283 * 60.00285 * 15 14 13 46 46 H 1.08997 * 109.46968 * 60.00225 * 17 16 15 47 47 H 1.09005 * 109.47007 * 180.02562 * 17 16 15 48 48 H 1.08994 * 109.46985 * 300.00407 * 17 16 15 49 49 H 1.09006 * 109.47052 * 290.00012 * 18 16 15 50 50 H 1.09003 * 109.47468 * 49.99623 * 18 16 15 51 51 H 0.96996 * 119.99537 * 0.02562 * 21 19 18 52 52 H 0.97003 * 120.00376 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0429 -0.7249 1.2471 5 8 3.4707 -0.7730 1.2150 6 6 4.0056 -1.4795 0.0939 7 6 3.5716 -0.7851 -1.1996 8 6 2.0418 -0.7245 -1.2488 9 1 1.6375 -1.7365 -1.2747 10 6 1.6064 0.0260 -2.4810 11 8 0.9443 1.0364 -2.3733 12 7 1.9529 -0.4257 -3.7027 13 6 1.5292 0.3036 -4.9005 14 6 2.0503 -0.4156 -6.1463 15 6 1.6072 0.3456 -7.3974 16 7 2.1070 -0.3452 -8.5936 17 6 1.4744 -1.6625 -8.7438 18 6 1.9084 0.4743 -9.7965 19 6 2.6448 -0.1470 -10.9551 20 8 3.2731 -1.1722 -10.7948 21 7 2.6046 0.4356 -12.1698 22 6 3.2751 -0.1295 -13.2237 23 1 3.8351 -1.0418 -13.0806 24 6 3.2341 0.4716 -14.4757 25 7 2.5531 1.5819 -14.6496 26 14 4.1470 -0.2988 -15.9119 27 1 4.8312 -1.5359 -15.4572 28 1 3.1816 -0.6349 -16.9891 29 1 5.1535 0.6617 -16.4312 30 1 -0.3634 -1.0276 0.0021 31 1 -0.3633 0.5157 0.8889 32 1 -0.3633 0.5120 -0.8910 33 1 1.7172 -0.1890 2.1387 34 1 1.6452 -1.7395 1.2672 35 1 3.6338 -2.5041 0.0989 36 1 5.0939 -1.4874 0.1548 37 1 3.9418 -1.3474 -2.0568 38 1 3.9771 0.2265 -1.2237 39 1 2.4822 -1.2339 -3.7888 40 1 0.4405 0.3455 -4.9343 41 1 1.9311 1.3163 -4.8705 42 1 3.1389 -0.4580 -6.1129 43 1 1.6481 -1.4283 -6.1763 44 1 0.5185 0.3875 -7.4308 45 1 2.0091 1.3584 -7.3679 46 1 0.3955 -1.5389 -8.8368 47 1 1.8627 -2.1524 -9.6367 48 1 1.6960 -2.2738 -7.8690 49 1 0.8446 0.5273 -10.0284 50 1 2.2919 1.4791 -9.6190 51 1 2.1020 1.2552 -12.2981 52 1 2.5247 2.0017 -15.5236 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001752058933.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:38:20 Heat of formation + Delta-G solvation = -153.980524 kcal Electronic energy + Delta-G solvation = -29328.497111 eV Core-core repulsion = 25133.431845 eV Total energy + Delta-G solvation = -4195.065266 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52639 -40.38590 -39.61996 -38.27268 -36.36147 -35.79917 -35.26971 -33.47666 -33.26060 -32.23644 -29.40190 -28.31096 -27.47148 -26.85369 -26.13589 -23.92126 -23.27384 -22.18575 -21.77740 -20.96844 -20.71432 -19.84606 -18.35211 -17.86026 -17.25644 -17.08176 -16.89340 -16.65976 -16.56937 -16.30152 -16.18273 -15.82189 -15.51362 -15.37180 -15.24116 -15.05611 -14.96848 -14.69957 -14.00539 -13.74415 -13.54721 -13.47574 -13.29293 -13.07217 -13.02749 -12.88550 -12.74318 -12.70585 -12.50868 -12.42623 -12.37756 -12.32502 -12.10673 -11.97865 -11.64217 -11.59534 -11.45506 -11.41918 -10.93776 -10.32653 -10.25013 -10.08103 -9.99016 -9.19745 -8.45835 -5.94406 1.37058 1.42262 1.56364 1.60391 2.06604 2.11770 2.29909 2.81411 2.98479 3.21197 3.43545 3.51706 3.67612 3.72489 3.92081 3.96730 4.03997 4.13428 4.22939 4.26545 4.33358 4.40407 4.47034 4.49085 4.51503 4.55069 4.60867 4.62407 4.63935 4.66238 4.74323 4.76052 4.80186 4.82087 4.94610 5.07987 5.08872 5.14692 5.19651 5.28246 5.32054 5.35968 5.42277 5.52236 5.89124 6.08058 6.23296 6.27118 6.54168 6.61797 7.14188 7.24671 7.57862 8.13623 8.71814 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030967 B = 0.001451 C = 0.001417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.971077 B =19286.803611 C =19748.353931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 H 0.059 0.941 4 C 0.067 3.933 5 O -0.406 6.406 6 C 0.058 3.942 7 C -0.144 4.144 8 C -0.101 4.101 9 H 0.122 0.878 10 C 0.515 3.485 11 O -0.576 6.576 12 N -0.718 5.718 13 C 0.128 3.872 14 C -0.113 4.113 15 C 0.057 3.943 16 N -0.537 5.537 17 C 0.025 3.975 18 C 0.056 3.944 19 C 0.442 3.558 20 O -0.613 6.613 21 N -0.576 5.576 22 C -0.332 4.332 23 H 0.080 0.920 24 C -0.014 4.014 25 N -0.922 5.922 26 Si 0.993 3.007 27 H -0.273 1.273 28 H -0.272 1.272 29 H -0.272 1.272 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.101 0.899 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.059 0.941 39 H 0.415 0.585 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.044 0.956 45 H 0.082 0.918 46 H 0.027 0.973 47 H 0.053 0.947 48 H 0.085 0.915 49 H 0.066 0.934 50 H 0.108 0.892 51 H 0.395 0.605 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.577 -5.412 30.019 30.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.124 4.124 3 H 0.077 0.923 4 C -0.010 4.010 5 O -0.325 6.325 6 C -0.018 4.018 7 C -0.182 4.182 8 C -0.122 4.122 9 H 0.140 0.860 10 C 0.302 3.698 11 O -0.455 6.455 12 N -0.370 5.370 13 C 0.003 3.997 14 C -0.151 4.151 15 C -0.071 4.071 16 N -0.261 5.261 17 C -0.123 4.123 18 C -0.075 4.075 19 C 0.229 3.771 20 O -0.499 6.499 21 N -0.213 5.213 22 C -0.461 4.461 23 H 0.098 0.902 24 C -0.213 4.213 25 N -0.563 5.563 26 Si 0.817 3.183 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.197 1.197 30 H 0.084 0.916 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.119 0.881 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.125 0.875 37 H 0.121 0.879 38 H 0.078 0.922 39 H 0.251 0.749 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.062 0.938 45 H 0.100 0.900 46 H 0.045 0.955 47 H 0.072 0.928 48 H 0.103 0.897 49 H 0.084 0.916 50 H 0.126 0.874 51 H 0.229 0.771 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -3.042 -5.248 30.211 30.814 hybrid contribution -0.714 0.184 -1.599 1.761 sum -3.756 -5.064 28.612 29.299 Atomic orbital electron populations 1.21843 0.93837 1.02341 1.02682 1.21530 0.97052 0.99596 0.94173 0.92289 1.22760 0.80258 1.00555 0.97395 1.87930 1.21207 1.76984 1.46352 1.22756 1.00117 0.95049 0.83899 1.22220 0.92628 1.02624 1.00757 1.21482 0.97889 1.01178 0.91661 0.85994 1.20999 0.78678 0.84740 0.85377 1.90662 1.40551 1.27121 1.87207 1.45949 1.55760 1.30133 1.05160 1.21163 0.99459 0.95621 0.83439 1.21617 1.02329 0.99766 0.91379 1.22091 0.98079 0.98209 0.88675 1.61510 1.59281 1.03614 1.01710 1.22466 0.95658 0.90952 1.03229 1.21744 0.98816 0.97856 0.89063 1.20782 0.85401 0.86478 0.84444 1.90458 1.47878 1.27175 1.84428 1.41954 1.46238 1.25367 1.07781 1.19702 1.28661 1.09108 0.88640 0.90244 1.26031 0.98096 0.96389 1.00813 1.69679 1.41921 1.19019 1.25657 0.84867 0.77987 0.78125 0.77329 1.19734 1.19681 1.19700 0.91618 0.91983 0.92630 0.88097 0.91185 0.90948 0.87463 0.87931 0.92200 0.74862 0.92044 0.92287 0.90438 0.90279 0.93756 0.89991 0.95472 0.92803 0.89673 0.91638 0.87368 0.77094 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 8.93 71.98 0.64 -1.48 16 2 C -0.10 -1.47 2.05 -10.70 -0.02 -1.49 16 3 H 0.06 1.15 8.03 -2.39 -0.02 1.14 16 4 C 0.07 0.74 6.13 72.01 0.44 1.18 16 5 O -0.41 -5.87 10.77 -148.98 -1.60 -7.48 16 6 C 0.06 0.51 6.84 72.01 0.49 1.00 16 7 C -0.14 -1.35 5.29 30.69 0.16 -1.18 16 8 C -0.10 -1.17 2.11 -11.42 -0.02 -1.20 16 9 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 10 C 0.51 9.07 6.88 87.66 0.60 9.67 16 11 O -0.58 -15.09 13.86 -3.03 -0.04 -15.14 16 12 N -0.72 -9.85 5.46 -463.07 -2.53 -12.38 16 13 C 0.13 2.10 5.67 86.38 0.49 2.59 16 14 C -0.11 -1.88 5.25 30.60 0.16 -1.72 16 15 C 0.06 1.23 4.96 86.30 0.43 1.66 16 16 N -0.54 -16.38 4.50 -927.04 -4.17 -20.55 16 17 C 0.02 0.74 8.96 127.69 1.14 1.89 16 18 C 0.06 1.92 5.45 85.56 0.47 2.39 16 19 C 0.44 20.85 7.48 87.66 0.66 21.50 16 20 O -0.61 -33.35 13.91 -3.10 -0.04 -33.40 16 21 N -0.58 -29.51 5.29 -306.98 -1.62 -31.13 16 22 C -0.33 -18.79 9.68 84.04 0.81 -17.97 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 25 N -0.92 -49.76 13.05 21.66 0.28 -49.47 16 26 Si 0.99 42.84 29.55 68.60 2.03 44.87 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 28 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 29 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.05 1.12 5.79 -2.39 -0.01 1.11 16 33 H 0.10 1.00 8.14 -2.38 -0.02 0.98 16 34 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 35 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.10 0.50 7.67 -2.39 -0.02 0.48 16 38 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 39 H 0.41 3.35 7.96 -92.71 -0.74 2.61 16 40 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.36 16 43 H 0.08 1.21 6.55 -2.39 -0.02 1.19 16 44 H 0.04 0.88 8.12 -2.39 -0.02 0.86 16 45 H 0.08 1.67 7.93 -2.39 -0.02 1.66 16 46 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 47 H 0.05 2.09 5.82 -2.38 -0.01 2.08 16 48 H 0.08 2.07 6.47 -2.39 -0.02 2.05 16 49 H 0.07 2.02 8.12 -2.38 -0.02 2.00 16 50 H 0.11 3.26 7.93 -2.39 -0.02 3.25 16 51 H 0.40 19.29 7.90 -92.71 -0.73 18.56 16 52 H 0.28 13.97 8.31 -92.71 -0.77 13.20 16 Total: -1.00 -74.19 410.36 -1.33 -75.52 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.55 Total: 32.59 kcal Atomic # 6 Polarization: 9.64 SS G_CDS: 6.92 Total: 16.57 kcal Atomic # 7 Polarization: -105.49 SS G_CDS: -8.04 Total: -113.53 kcal Atomic # 8 Polarization: -54.32 SS G_CDS: -1.69 Total: -56.01 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.87 kcal Total: -74.19 -1.33 -75.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752058933.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.461 kcal (2) G-P(sol) polarization free energy of solvation -74.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds