Wall clock time and date at job start Wed Apr 1 2020 01:52:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42893 * 114.00284 * 2 1 4 4 C 1.52995 * 109.47490 * 179.97438 * 3 2 1 5 5 C 1.53010 * 109.47432 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47224 * 179.97438 * 5 4 3 7 7 H 1.08993 * 109.47602 * 305.00266 * 6 5 4 8 8 C 1.53003 * 109.46790 * 65.00289 * 6 5 4 9 9 C 1.50699 * 109.47068 * 184.99865 * 6 5 4 10 10 O 1.21282 * 119.99983 * 338.80966 * 9 6 5 11 11 N 1.34775 * 120.00086 * 158.80783 * 9 6 5 12 12 C 1.46495 * 120.00154 * 185.54677 * 11 9 6 13 13 C 1.46500 * 119.99771 * 5.54756 * 11 9 6 14 14 C 1.53520 * 114.17055 * 126.18358 * 13 11 9 15 15 N 1.47481 * 87.93004 * 87.81051 * 14 13 11 16 16 C 1.46908 * 110.99460 * 138.70182 * 15 14 13 17 17 C 1.50705 * 109.46768 * 169.99851 * 16 15 14 18 18 O 1.21293 * 119.99797 * 0.02562 * 17 16 15 19 19 N 1.34769 * 119.99892 * 179.72317 * 17 16 15 20 20 C 1.37100 * 120.00189 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99839 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00250 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00285 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00045 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47401 * 89.99602 * 24 22 20 26 26 H 1.48505 * 109.47231 * 210.00026 * 24 22 20 27 27 H 1.48506 * 109.47314 * 329.99361 * 24 22 20 28 28 C 1.47484 * 87.83671 * 27.01447 * 15 14 13 29 29 H 1.09005 * 109.46987 * 60.00050 * 1 2 3 30 30 H 1.09005 * 109.47195 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47344 * 300.00262 * 1 2 3 32 32 H 1.09003 * 109.47193 * 59.99538 * 3 2 1 33 33 H 1.09005 * 109.47244 * 300.00193 * 3 2 1 34 34 H 1.09001 * 109.47441 * 60.00374 * 4 3 2 35 35 H 1.08997 * 109.47460 * 299.99821 * 4 3 2 36 36 H 1.09001 * 109.46528 * 59.99783 * 5 4 3 37 37 H 1.08997 * 109.46626 * 300.00300 * 5 4 3 38 38 H 1.09000 * 109.47243 * 172.88920 * 8 6 5 39 39 H 1.09001 * 109.47153 * 292.88802 * 8 6 5 40 40 H 1.09002 * 109.47507 * 52.88746 * 8 6 5 41 41 H 1.08998 * 109.47204 * 268.38057 * 12 11 9 42 42 H 1.09000 * 109.47439 * 28.38235 * 12 11 9 43 43 H 1.09008 * 109.47187 * 148.38301 * 12 11 9 44 44 H 1.09004 * 113.25848 * 353.23013 * 13 11 9 45 45 H 1.08993 * 113.47490 * 333.04118 * 14 13 11 46 46 H 1.08997 * 113.52819 * 202.58496 * 14 13 11 47 47 H 1.08996 * 109.46993 * 50.00230 * 16 15 14 48 48 H 1.08992 * 109.47345 * 289.99603 * 16 15 14 49 49 H 0.97000 * 120.00318 * 0.02562 * 19 17 16 50 50 H 0.96997 * 120.00368 * 180.02562 * 23 22 20 51 51 H 1.08994 * 113.48207 * 87.75751 * 28 15 14 52 52 H 1.09001 * 113.47324 * 218.22428 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5824 0.0013 6 6 5.6830 2.4615 0.0026 7 1 5.9980 1.8452 0.8445 8 6 6.1443 1.8137 -1.3045 9 6 6.2954 3.8328 0.1270 10 8 5.6500 4.8147 -0.1734 11 7 7.5603 3.9681 0.5722 12 6 8.1147 5.3033 0.8089 13 6 8.3808 2.7799 0.8194 14 6 9.7334 2.7878 0.0932 15 7 10.2920 3.5053 1.2543 16 6 11.6261 2.9943 1.5968 17 6 12.2647 3.9012 2.6171 18 8 11.6670 4.8769 3.0196 19 7 13.4973 3.6247 3.0867 20 6 14.0784 4.4500 4.0145 21 1 13.5483 5.3215 4.3693 22 6 15.3494 4.1652 4.4983 23 7 15.9063 4.9560 5.3879 24 14 16.2666 2.6583 3.8841 25 1 17.0727 3.0216 2.6910 26 1 17.1652 2.1554 4.9542 27 1 15.2912 1.5997 3.5189 28 6 9.2523 2.8637 2.0804 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8575 0.6436 -0.8891 35 1 3.8567 0.6439 0.8908 36 1 3.8357 3.1230 0.8913 37 1 3.8365 3.1235 -0.8887 38 1 7.2325 1.8420 -1.3598 39 1 5.8057 0.7781 -1.3360 40 1 5.7233 2.3594 -2.1490 41 1 8.6152 5.6541 -0.0936 42 1 7.3093 5.9905 1.0682 43 1 8.8322 5.2588 1.6283 44 1 7.8269 1.8462 0.7210 45 1 9.7311 3.3789 -0.8225 46 1 10.1573 1.7936 -0.0479 47 1 12.2448 2.9639 0.7000 48 1 11.5354 1.9898 2.0099 49 1 13.9736 2.8422 2.7678 50 1 16.7937 4.7574 5.7254 51 1 9.5471 1.8895 2.4701 52 1 8.8423 3.5193 2.8487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754584230.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:39 Heat of formation + Delta-G solvation = -72.009453 kcal Electronic energy + Delta-G solvation = -29995.774518 eV Core-core repulsion = 25804.263784 eV Total energy + Delta-G solvation = -4191.510734 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.11070 -39.53670 -38.37851 -37.96734 -35.88481 -34.73392 -33.92290 -31.77955 -31.69641 -30.10910 -27.71989 -27.24958 -26.14090 -26.01500 -25.52930 -23.73697 -23.16207 -21.44764 -20.68269 -19.43687 -18.44812 -18.37408 -17.51379 -16.75427 -16.60421 -16.33514 -15.99782 -15.79561 -15.40006 -15.34378 -15.10588 -14.83718 -14.77972 -14.41016 -13.77166 -13.57830 -13.49105 -13.27093 -13.04514 -12.73657 -12.62934 -12.45628 -12.35835 -12.22696 -12.10697 -11.98021 -11.83128 -11.68536 -11.61054 -11.52874 -11.26961 -11.17837 -11.11514 -10.95428 -10.89116 -10.62135 -10.08346 -9.99472 -9.76894 -9.58162 -8.96880 -8.69345 -8.36584 -8.19327 -6.32363 -3.83946 2.46710 2.81510 2.99254 3.04384 3.12831 3.33685 3.71023 3.81445 4.08215 4.19269 4.23658 4.40007 4.50833 4.58701 4.66238 4.73832 4.78349 4.86678 4.92218 5.00083 5.03033 5.07679 5.16041 5.17324 5.20354 5.24457 5.29063 5.35546 5.41950 5.43888 5.46936 5.51562 5.56756 5.63797 5.71806 5.74503 5.83196 5.88628 5.89318 5.93723 5.97601 6.23678 6.32785 6.46325 6.73418 6.92909 7.34302 7.56369 8.06201 8.12833 8.58772 8.94159 9.41004 9.82303 10.80876 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023304 B = 0.001783 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.228037 B =15698.400357 C =16113.782660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.394 6.394 3 C 0.060 3.940 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.111 4.111 7 H 0.095 0.905 8 C -0.146 4.146 9 C 0.518 3.482 10 O -0.540 6.540 11 N -0.586 5.586 12 C 0.085 3.915 13 C 0.105 3.895 14 C -0.018 4.018 15 N -0.436 5.436 16 C 0.005 3.995 17 C 0.455 3.545 18 O -0.557 6.557 19 N -0.593 5.593 20 C -0.304 4.304 21 H 0.119 0.881 22 C 0.041 3.959 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.271 1.271 28 C -0.009 4.009 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.069 0.931 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.066 0.934 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.079 0.921 47 H 0.089 0.911 48 H 0.062 0.938 49 H 0.369 0.631 50 H 0.273 0.727 51 H 0.081 0.919 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.370 -13.769 -13.825 30.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.313 6.313 3 C -0.017 4.017 4 C -0.156 4.156 5 C -0.136 4.136 6 C -0.132 4.132 7 H 0.113 0.887 8 C -0.203 4.203 9 C 0.306 3.694 10 O -0.417 6.417 11 N -0.317 5.317 12 C -0.057 4.057 13 C -0.001 4.001 14 C -0.149 4.149 15 N -0.158 5.158 16 C -0.128 4.128 17 C 0.240 3.760 18 O -0.438 6.438 19 N -0.233 5.233 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.522 5.522 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.139 4.139 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.117 0.883 44 H 0.129 0.871 45 H 0.108 0.892 46 H 0.097 0.903 47 H 0.108 0.892 48 H 0.080 0.920 49 H 0.202 0.798 50 H 0.084 0.916 51 H 0.099 0.901 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -23.699 -11.907 -13.559 29.787 hybrid contribution 1.039 -1.868 -0.245 2.152 sum -22.660 -13.775 -13.805 29.897 Atomic orbital electron populations 1.22738 0.81002 1.02742 1.00028 1.87858 1.19751 1.28283 1.95453 1.22564 0.94239 0.84487 1.00386 1.21569 0.92931 0.97560 1.03586 1.21321 0.92386 0.96129 1.03772 1.21324 0.96678 0.94364 1.00817 0.88694 1.21850 1.01742 1.01064 0.95679 1.20614 0.81001 0.91307 0.76437 1.90689 1.61319 1.40708 1.48970 1.47473 1.12203 1.07129 1.64898 1.21778 0.99304 0.81652 1.02934 1.22267 0.91564 0.89009 0.97230 1.24357 0.94028 0.98973 0.97514 1.68897 1.00038 1.43990 1.02877 1.22557 0.93081 0.97132 0.99987 1.19544 0.82753 0.88065 0.85618 1.90563 1.62827 1.29566 1.60800 1.42218 1.15548 1.25597 1.39969 1.19420 0.99629 1.07676 1.16592 0.86319 1.25029 0.96594 0.97864 0.96667 1.69618 1.16117 1.37318 1.29135 0.86673 0.80501 0.82719 0.79449 1.19647 1.20202 1.19617 1.24341 0.92789 0.99576 0.97189 0.94083 0.89638 0.94045 0.93220 0.93200 0.90691 0.90969 0.91264 0.90633 0.91892 0.91076 0.91787 0.92934 0.91563 0.88251 0.87109 0.89223 0.90276 0.89229 0.92019 0.79821 0.91625 0.90107 0.88686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.38 10.70 -35.23 -0.38 -3.76 16 3 C 0.06 0.43 5.94 37.15 0.22 0.65 16 4 C -0.12 -0.80 5.34 -26.73 -0.14 -0.94 16 5 C -0.10 -0.77 4.08 -26.73 -0.11 -0.88 16 6 C -0.11 -0.88 1.86 -91.77 -0.17 -1.05 16 7 H 0.09 0.62 6.75 -51.93 -0.35 0.27 16 8 C -0.15 -0.94 8.44 37.16 0.31 -0.63 16 9 C 0.52 6.15 6.81 -10.99 -0.07 6.08 16 10 O -0.54 -8.37 15.76 5.56 0.09 -8.28 16 11 N -0.59 -6.86 3.12 -173.61 -0.54 -7.41 16 12 C 0.09 1.17 9.50 59.84 0.57 1.74 16 13 C 0.11 0.99 3.73 -67.71 -0.25 0.74 16 14 C -0.02 -0.18 7.21 -7.53 -0.05 -0.24 16 15 N -0.44 -6.14 4.21 -246.07 -1.04 -7.17 16 16 C 0.00 0.07 5.30 -4.97 -0.03 0.04 16 17 C 0.45 10.00 7.85 -10.99 -0.09 9.91 16 18 O -0.56 -14.64 16.01 5.55 0.09 -14.55 16 19 N -0.59 -13.81 5.09 -10.96 -0.06 -13.86 16 20 C -0.30 -8.52 10.16 -14.93 -0.15 -8.67 16 21 H 0.12 3.82 7.39 -52.49 -0.39 3.43 16 22 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.62 13.96 55.50 0.77 -24.85 16 24 Si 0.88 19.08 27.74 -169.99 -4.71 14.36 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 27 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 28 C -0.01 -0.11 6.77 -7.53 -0.05 -0.16 16 29 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.04 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.48 6.73 -51.93 -0.35 0.13 16 35 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 38 H 0.06 0.39 6.93 -51.93 -0.36 0.03 16 39 H 0.07 0.35 6.93 -51.93 -0.36 -0.01 16 40 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.94 7.46 -51.93 -0.39 0.55 16 43 H 0.10 1.55 5.84 -51.92 -0.30 1.25 16 44 H 0.11 0.73 5.32 -51.93 -0.28 0.45 16 45 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 46 H 0.08 0.60 7.91 -51.93 -0.41 0.19 16 47 H 0.09 1.20 8.08 -51.93 -0.42 0.78 16 48 H 0.06 0.78 7.30 -51.93 -0.38 0.41 16 49 H 0.37 7.49 5.76 -40.82 -0.24 7.26 16 50 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 51 H 0.08 0.81 7.42 -51.93 -0.39 0.43 16 52 H 0.09 1.32 7.63 -51.93 -0.40 0.93 16 LS Contribution 412.01 15.07 6.21 6.21 Total: -1.00 -35.23 412.01 -7.38 -42.61 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -8.81 Total: 7.79 kcal Atomic # 6 Polarization: 7.91 SS G_CDS: 1.00 Total: 8.91 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.86 Total: -53.29 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.20 Total: -26.60 kcal Atomic # 14 Polarization: 19.08 SS G_CDS: -4.71 Total: 14.36 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.23 -7.38 -42.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754584230.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.397 kcal (2) G-P(sol) polarization free energy of solvation -35.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds