Wall clock time and date at job start Wed Apr 1 2020 01:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42893 * 114.00284 * 2 1 4 4 C 1.52995 * 109.47490 * 179.97438 * 3 2 1 5 5 C 1.53010 * 109.47432 * 180.02562 * 4 3 2 6 6 C 1.52995 * 109.47224 * 179.97438 * 5 4 3 7 7 H 1.08993 * 109.47602 * 305.00266 * 6 5 4 8 8 C 1.53003 * 109.46790 * 65.00289 * 6 5 4 9 9 C 1.50699 * 109.47068 * 184.99865 * 6 5 4 10 10 O 1.21282 * 119.99983 * 338.80966 * 9 6 5 11 11 N 1.34775 * 120.00086 * 158.80783 * 9 6 5 12 12 C 1.46495 * 120.00154 * 185.54677 * 11 9 6 13 13 C 1.46500 * 119.99771 * 5.54756 * 11 9 6 14 14 C 1.53520 * 114.17055 * 126.18358 * 13 11 9 15 15 N 1.47481 * 87.93004 * 87.81051 * 14 13 11 16 16 C 1.46908 * 110.99460 * 138.70182 * 15 14 13 17 17 C 1.50705 * 109.46768 * 169.99851 * 16 15 14 18 18 O 1.21293 * 119.99797 * 0.02562 * 17 16 15 19 19 N 1.34769 * 119.99892 * 179.72317 * 17 16 15 20 20 C 1.37100 * 120.00189 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99839 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00250 * 180.02562 * 20 19 17 23 23 N 1.31411 * 120.00285 * 180.02562 * 22 20 19 24 24 Si 1.86796 * 120.00045 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47401 * 89.99602 * 24 22 20 26 26 H 1.48505 * 109.47231 * 210.00026 * 24 22 20 27 27 H 1.48506 * 109.47314 * 329.99361 * 24 22 20 28 28 C 1.47484 * 87.83671 * 27.01447 * 15 14 13 29 29 H 1.09005 * 109.46987 * 60.00050 * 1 2 3 30 30 H 1.09005 * 109.47195 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47344 * 300.00262 * 1 2 3 32 32 H 1.09003 * 109.47193 * 59.99538 * 3 2 1 33 33 H 1.09005 * 109.47244 * 300.00193 * 3 2 1 34 34 H 1.09001 * 109.47441 * 60.00374 * 4 3 2 35 35 H 1.08997 * 109.47460 * 299.99821 * 4 3 2 36 36 H 1.09001 * 109.46528 * 59.99783 * 5 4 3 37 37 H 1.08997 * 109.46626 * 300.00300 * 5 4 3 38 38 H 1.09000 * 109.47243 * 172.88920 * 8 6 5 39 39 H 1.09001 * 109.47153 * 292.88802 * 8 6 5 40 40 H 1.09002 * 109.47507 * 52.88746 * 8 6 5 41 41 H 1.08998 * 109.47204 * 268.38057 * 12 11 9 42 42 H 1.09000 * 109.47439 * 28.38235 * 12 11 9 43 43 H 1.09008 * 109.47187 * 148.38301 * 12 11 9 44 44 H 1.09004 * 113.25848 * 353.23013 * 13 11 9 45 45 H 1.08993 * 113.47490 * 333.04118 * 14 13 11 46 46 H 1.08997 * 113.52819 * 202.58496 * 14 13 11 47 47 H 1.08996 * 109.46993 * 50.00230 * 16 15 14 48 48 H 1.08992 * 109.47345 * 289.99603 * 16 15 14 49 49 H 0.97000 * 120.00318 * 0.02562 * 19 17 16 50 50 H 0.96997 * 120.00368 * 180.02562 * 23 22 20 51 51 H 1.08994 * 113.48207 * 87.75751 * 28 15 14 52 52 H 1.09001 * 113.47324 * 218.22428 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5824 0.0013 6 6 5.6830 2.4615 0.0026 7 1 5.9980 1.8452 0.8445 8 6 6.1443 1.8137 -1.3045 9 6 6.2954 3.8328 0.1270 10 8 5.6500 4.8147 -0.1734 11 7 7.5603 3.9681 0.5722 12 6 8.1147 5.3033 0.8089 13 6 8.3808 2.7799 0.8194 14 6 9.7334 2.7878 0.0932 15 7 10.2920 3.5053 1.2543 16 6 11.6261 2.9943 1.5968 17 6 12.2647 3.9012 2.6171 18 8 11.6670 4.8769 3.0196 19 7 13.4973 3.6247 3.0867 20 6 14.0784 4.4500 4.0145 21 1 13.5483 5.3215 4.3693 22 6 15.3494 4.1652 4.4983 23 7 15.9063 4.9560 5.3879 24 14 16.2666 2.6583 3.8841 25 1 17.0727 3.0216 2.6910 26 1 17.1652 2.1554 4.9542 27 1 15.2912 1.5997 3.5189 28 6 9.2523 2.8637 2.0804 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8575 0.6436 -0.8891 35 1 3.8567 0.6439 0.8908 36 1 3.8357 3.1230 0.8913 37 1 3.8365 3.1235 -0.8887 38 1 7.2325 1.8420 -1.3598 39 1 5.8057 0.7781 -1.3360 40 1 5.7233 2.3594 -2.1490 41 1 8.6152 5.6541 -0.0936 42 1 7.3093 5.9905 1.0682 43 1 8.8322 5.2588 1.6283 44 1 7.8269 1.8462 0.7210 45 1 9.7311 3.3789 -0.8225 46 1 10.1573 1.7936 -0.0479 47 1 12.2448 2.9639 0.7000 48 1 11.5354 1.9898 2.0099 49 1 13.9736 2.8422 2.7678 50 1 16.7937 4.7574 5.7254 51 1 9.5471 1.8895 2.4701 52 1 8.8423 3.5193 2.8487 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754584230.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:38 Heat of formation + Delta-G solvation = -99.929978 kcal Electronic energy + Delta-G solvation = -29996.985243 eV Core-core repulsion = 25804.263784 eV Total energy + Delta-G solvation = -4192.721459 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.03453 -40.59499 -39.63745 -38.91554 -36.55315 -36.03848 -35.65132 -33.73099 -32.36283 -31.30063 -28.55434 -27.94383 -27.32902 -26.91416 -26.39926 -25.04824 -23.98091 -22.18457 -21.45639 -21.25095 -20.28136 -19.18857 -18.41457 -17.75041 -17.36474 -17.14881 -17.06832 -16.81358 -16.76452 -16.22837 -16.20875 -15.95112 -15.62082 -15.34141 -15.10812 -14.81519 -14.48610 -14.35269 -14.27633 -14.18427 -13.59104 -13.49925 -13.30209 -13.11381 -13.02015 -12.90346 -12.69975 -12.65586 -12.58910 -12.40780 -12.26491 -12.12101 -12.05601 -11.97253 -11.87182 -11.69313 -11.53417 -11.48424 -10.70721 -10.59322 -10.42494 -10.22253 -9.70306 -9.63165 -8.39774 -6.00730 1.30218 1.37136 1.45633 1.55968 1.93417 2.01279 2.24473 2.70558 2.82484 3.16179 3.26743 3.44380 3.46505 3.79894 3.83756 3.94939 4.15164 4.19357 4.20832 4.24297 4.31147 4.39385 4.43997 4.51012 4.52608 4.54494 4.55382 4.57125 4.64739 4.65903 4.69380 4.74758 4.86023 4.86526 4.89154 4.93540 5.02660 5.03946 5.07956 5.21586 5.37995 5.40967 5.44051 5.47721 5.55093 5.92423 6.04427 6.23929 6.45169 6.62347 6.91500 7.13399 7.43451 8.02715 8.78280 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023304 B = 0.001783 C = 0.001737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.228037 B =15698.400357 C =16113.782660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.055 3.945 4 C -0.109 4.109 5 C -0.093 4.093 6 C -0.103 4.103 7 H 0.120 0.880 8 C -0.143 4.143 9 C 0.513 3.487 10 O -0.585 6.585 11 N -0.588 5.588 12 C 0.097 3.903 13 C 0.115 3.885 14 C -0.006 4.006 15 N -0.481 5.481 16 C 0.019 3.981 17 C 0.451 3.549 18 O -0.611 6.611 19 N -0.595 5.595 20 C -0.328 4.328 21 H 0.051 0.949 22 C -0.018 4.018 23 N -0.938 5.938 24 Si 0.967 3.033 25 H -0.259 1.259 26 H -0.277 1.277 27 H -0.227 1.227 28 C -0.013 4.013 29 H 0.048 0.952 30 H 0.097 0.903 31 H 0.046 0.954 32 H 0.049 0.951 33 H 0.052 0.948 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.095 0.905 40 H 0.051 0.949 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.154 0.846 45 H 0.083 0.917 46 H 0.121 0.879 47 H 0.117 0.883 48 H 0.101 0.899 49 H 0.390 0.610 50 H 0.278 0.722 51 H 0.110 0.890 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.364 -19.027 -16.244 34.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.335 6.335 3 C -0.021 4.021 4 C -0.147 4.147 5 C -0.131 4.131 6 C -0.123 4.123 7 H 0.138 0.862 8 C -0.200 4.200 9 C 0.304 3.696 10 O -0.465 6.465 11 N -0.318 5.318 12 C -0.046 4.046 13 C 0.010 3.990 14 C -0.136 4.136 15 N -0.204 5.204 16 C -0.112 4.112 17 C 0.239 3.761 18 O -0.495 6.495 19 N -0.237 5.237 20 C -0.457 4.457 21 H 0.069 0.931 22 C -0.216 4.216 23 N -0.579 5.579 24 Si 0.787 3.213 25 H -0.183 1.183 26 H -0.202 1.202 27 H -0.150 1.150 28 C -0.143 4.143 29 H 0.066 0.934 30 H 0.115 0.885 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.090 0.910 39 H 0.114 0.886 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.096 0.904 44 H 0.171 0.829 45 H 0.102 0.898 46 H 0.139 0.861 47 H 0.135 0.865 48 H 0.119 0.881 49 H 0.225 0.775 50 H 0.088 0.912 51 H 0.128 0.872 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -23.714 -17.203 -16.000 33.381 hybrid contribution 0.910 -0.057 0.556 1.068 sum -22.804 -17.260 -15.444 32.503 Atomic orbital electron populations 1.22908 0.79798 1.03766 1.00656 1.87814 1.21215 1.28868 1.95583 1.22627 0.94708 0.84233 1.00535 1.21478 0.92428 0.96505 1.04271 1.21245 0.92645 0.96750 1.02507 1.21384 0.96190 0.91904 1.02872 0.86210 1.21876 1.02281 1.01962 0.93908 1.21426 0.80508 0.92533 0.75168 1.90668 1.62316 1.42626 1.50924 1.47586 1.12699 1.06996 1.64565 1.21457 0.98200 0.83277 1.01711 1.22451 0.91733 0.89222 0.95600 1.24428 0.93210 1.00386 0.95544 1.68852 0.99898 1.46258 1.05386 1.22493 0.93643 0.96525 0.98572 1.21036 0.81779 0.87919 0.85347 1.90547 1.64042 1.32290 1.62592 1.42050 1.16319 1.25782 1.39560 1.18979 1.00434 1.07372 1.18930 0.93120 1.26146 0.97026 1.02198 0.96192 1.69816 1.16906 1.40221 1.30963 0.85333 0.79144 0.77922 0.78876 1.18328 1.20226 1.14991 1.24432 0.92851 0.99858 0.97141 0.93368 0.88491 0.93532 0.93271 0.92979 0.89759 0.90355 0.92663 0.91958 0.90963 0.88638 0.92984 0.93462 0.92988 0.90399 0.82864 0.89828 0.86116 0.86467 0.88088 0.77491 0.91249 0.87231 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.44 10.70 -148.98 -1.59 -8.04 16 3 C 0.06 0.72 5.94 71.98 0.43 1.15 16 4 C -0.11 -1.20 5.34 30.60 0.16 -1.04 16 5 C -0.09 -1.34 4.08 30.60 0.12 -1.21 16 6 C -0.10 -1.36 1.86 -11.54 -0.02 -1.38 16 7 H 0.12 1.02 6.75 -2.39 -0.02 1.00 16 8 C -0.14 -1.30 8.44 71.98 0.61 -0.69 16 9 C 0.51 11.75 6.81 87.66 0.60 12.34 16 10 O -0.59 -18.63 15.76 -3.04 -0.05 -18.67 16 11 N -0.59 -13.23 3.12 -821.58 -2.56 -15.80 16 12 C 0.10 2.80 9.50 127.77 1.21 4.02 16 13 C 0.11 1.77 3.73 45.45 0.17 1.94 16 14 C -0.01 -0.10 7.21 83.58 0.60 0.50 16 15 N -0.48 -12.47 4.21 -932.44 -3.93 -16.40 16 16 C 0.02 0.51 5.30 85.56 0.45 0.97 16 17 C 0.45 19.73 7.85 87.66 0.69 20.42 16 18 O -0.61 -33.77 16.01 -3.07 -0.05 -33.82 16 19 N -0.59 -27.34 5.09 -306.99 -1.56 -28.91 16 20 C -0.33 -19.16 10.16 84.04 0.85 -18.31 16 21 H 0.05 3.57 7.39 -2.91 -0.02 3.54 16 22 C -0.02 -0.97 5.50 84.92 0.47 -0.50 16 23 N -0.94 -56.76 13.96 21.66 0.30 -56.46 16 24 Si 0.97 38.05 27.74 68.60 1.90 39.95 16 25 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 26 H -0.28 -10.89 7.11 99.48 0.71 -10.19 16 27 H -0.23 -7.27 6.52 99.48 0.65 -6.62 16 28 C -0.01 -0.28 6.77 83.58 0.57 0.29 16 29 H 0.05 0.40 8.14 -2.38 -0.02 0.38 16 30 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 31 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.08 0.79 6.73 -2.39 -0.02 0.77 16 35 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.06 1.06 8.05 -2.39 -0.02 1.04 16 38 H 0.07 0.55 6.93 -2.39 -0.02 0.53 16 39 H 0.09 0.45 6.93 -2.39 -0.02 0.44 16 40 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.05 1.61 7.46 -2.39 -0.02 1.59 16 43 H 0.08 2.62 5.84 -2.38 -0.01 2.60 16 44 H 0.15 1.11 5.32 -2.38 -0.01 1.10 16 45 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.12 0.95 7.91 -2.39 -0.02 0.93 16 47 H 0.12 2.54 8.08 -2.39 -0.02 2.52 16 48 H 0.10 1.96 7.30 -2.39 -0.02 1.94 16 49 H 0.39 14.51 5.76 -92.71 -0.53 13.98 16 50 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 51 H 0.11 1.69 7.42 -2.39 -0.02 1.67 16 52 H 0.06 1.69 7.63 -2.39 -0.02 1.67 16 Total: -1.00 -87.22 412.01 0.94 -86.28 By element: Atomic # 1 Polarization: 31.55 SS G_CDS: 0.32 Total: 31.87 kcal Atomic # 6 Polarization: 11.83 SS G_CDS: 8.16 Total: 19.99 kcal Atomic # 7 Polarization: -109.81 SS G_CDS: -7.75 Total: -117.56 kcal Atomic # 8 Polarization: -58.84 SS G_CDS: -1.69 Total: -60.53 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.90 Total: 39.95 kcal Total: -87.22 0.94 -86.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754584230.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.651 kcal (2) G-P(sol) polarization free energy of solvation -87.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.279 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds