Wall clock time and date at job start Wed Apr 1 2020 01:52:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99958 * 2 1 4 4 C 1.52994 * 109.47102 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46888 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47032 * 180.02562 * 5 4 3 7 7 H 1.08993 * 109.47537 * 54.99253 * 6 5 4 8 8 C 1.53002 * 109.46620 * 294.99570 * 6 5 4 9 9 C 1.50695 * 109.47142 * 174.99794 * 6 5 4 10 10 O 1.21283 * 120.00333 * 359.97438 * 9 6 5 11 11 N 1.34777 * 120.00084 * 179.97438 * 9 6 5 12 12 C 1.46500 * 119.99723 * 359.97438 * 11 9 6 13 13 C 1.46500 * 120.00159 * 180.02562 * 11 9 6 14 14 C 1.53514 * 114.16894 * 239.99852 * 13 11 9 15 15 N 1.47482 * 87.93039 * 220.32940 * 14 13 11 16 16 C 1.46901 * 110.99764 * 138.70591 * 15 14 13 17 17 C 1.50701 * 109.46921 * 169.99672 * 16 15 14 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47117 * 59.99412 * 24 22 20 26 26 H 1.48498 * 109.47600 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46756 * 300.00019 * 24 22 20 28 28 C 1.47480 * 87.83699 * 27.01095 * 15 14 13 29 29 H 1.09006 * 109.46714 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46868 * 299.99615 * 1 2 3 31 31 H 1.08998 * 109.47046 * 59.99934 * 1 2 3 32 32 H 1.09000 * 109.46725 * 59.99878 * 3 2 1 33 33 H 1.09004 * 109.46882 * 300.00345 * 3 2 1 34 34 H 1.09000 * 109.47420 * 60.00316 * 4 3 2 35 35 H 1.09001 * 109.47075 * 300.00144 * 4 3 2 36 36 H 1.08992 * 109.47678 * 59.99974 * 5 4 3 37 37 H 1.08996 * 109.46755 * 299.99477 * 5 4 3 38 38 H 1.08999 * 109.47032 * 179.97438 * 8 6 5 39 39 H 1.09000 * 109.47227 * 300.00182 * 8 6 5 40 40 H 1.08998 * 109.47276 * 60.00398 * 8 6 5 41 41 H 1.09005 * 109.47136 * 269.99642 * 12 11 9 42 42 H 1.09000 * 109.47308 * 30.00169 * 12 11 9 43 43 H 1.09001 * 109.47074 * 150.00738 * 12 11 9 44 44 H 1.08997 * 113.25620 * 12.95121 * 13 11 9 45 45 H 1.08994 * 113.47382 * 105.55784 * 14 13 11 46 46 H 1.09003 * 113.47448 * 335.09691 * 14 13 11 47 47 H 1.09002 * 109.47401 * 49.99700 * 16 15 14 48 48 H 1.09001 * 109.46874 * 289.99713 * 16 15 14 49 49 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 50 50 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 51 51 H 1.08999 * 113.47664 * 87.75895 * 28 15 14 52 52 H 1.08994 * 113.47488 * 218.22090 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0013 6 6 5.6830 2.4617 0.0013 7 1 5.9987 1.8457 -0.8406 8 6 6.1431 1.8132 1.3085 9 6 6.2955 3.8330 -0.1220 10 8 5.5823 4.8107 -0.2024 11 7 7.6358 3.9731 -0.1428 12 6 8.4972 2.7921 -0.0451 13 6 8.2312 5.3063 -0.2620 14 6 9.1187 5.4898 -1.5012 15 7 10.0548 6.2501 -0.6522 16 6 11.4477 5.8985 -0.9588 17 6 12.3740 6.8588 -0.2582 18 8 11.9186 7.7482 0.4293 19 7 13.7086 6.7287 -0.3948 20 6 14.5513 7.6020 0.2431 21 1 14.1457 8.3944 0.8546 22 6 15.9270 7.4682 0.1019 23 7 16.4205 6.5042 -0.6426 24 14 17.0753 8.6576 0.9715 25 1 16.8554 8.5753 2.4378 26 1 18.4834 8.3020 0.6619 27 1 16.7998 10.0408 0.5065 28 6 9.5546 5.4739 0.4977 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8575 0.6436 -0.8891 35 1 3.8567 0.6439 0.8909 36 1 3.8357 3.1232 0.8912 37 1 3.8365 3.1235 -0.8887 38 1 7.2297 1.7267 1.3083 39 1 5.8274 2.4292 2.1505 40 1 5.7001 0.8213 1.3976 41 1 8.7175 2.5888 1.0029 42 1 7.9878 1.9336 -0.4826 43 1 9.4275 2.9755 -0.5828 44 1 7.5159 6.1130 -0.1019 45 1 8.6544 6.0914 -2.2825 46 1 9.5354 4.5561 -1.8789 47 1 11.6091 5.9580 -2.0352 48 1 11.6500 4.8835 -0.6167 49 1 14.0728 6.0172 -0.9443 50 1 17.3810 6.4106 -0.7408 51 1 10.0877 4.5360 0.6535 52 1 9.4598 6.0621 1.4104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754584231.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:43 Heat of formation + Delta-G solvation = -77.782548 kcal Electronic energy + Delta-G solvation = -29522.486063 eV Core-core repulsion = 25330.724989 eV Total energy + Delta-G solvation = -4191.761074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.03319 -39.56119 -38.39332 -37.74971 -35.90454 -35.25070 -33.87578 -31.81815 -31.24353 -29.91120 -27.71182 -27.28997 -26.07190 -25.93627 -25.58530 -24.31803 -23.11013 -21.47095 -19.85591 -19.42854 -18.97717 -17.91802 -17.40066 -16.78676 -16.69942 -16.59388 -16.07927 -15.94247 -15.53813 -15.25592 -14.95327 -14.68651 -14.54193 -14.19027 -14.00933 -13.81721 -13.48421 -13.11866 -13.03420 -12.83745 -12.67919 -12.66235 -12.57298 -12.28571 -12.07514 -12.00975 -11.75349 -11.64508 -11.51111 -11.46870 -11.19564 -11.06473 -10.99788 -10.86263 -10.71537 -10.43758 -10.20658 -10.10803 -9.86710 -9.48624 -8.85352 -8.81484 -8.21979 -7.95560 -6.41146 -3.81907 2.39878 2.65416 3.20593 3.26019 3.30130 3.31011 3.90268 4.01750 4.15518 4.26052 4.38688 4.40368 4.47190 4.68334 4.71434 4.73818 4.74233 4.89185 4.90356 4.94820 4.98645 5.02996 5.10192 5.15494 5.18960 5.21791 5.24483 5.28623 5.30761 5.34111 5.40580 5.48630 5.56498 5.59425 5.64162 5.69731 5.73086 5.87980 5.90970 5.95845 6.03225 6.21218 6.31946 6.48638 6.70794 7.08260 7.18153 7.55604 7.95564 8.06411 8.62800 9.19091 9.54915 10.07572 10.76664 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.040494 B = 0.001524 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.297456 B =18371.874439 C =18586.378761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.119 4.119 5 C -0.098 4.098 6 C -0.107 4.107 7 H 0.098 0.902 8 C -0.160 4.160 9 C 0.519 3.481 10 O -0.537 6.537 11 N -0.604 5.604 12 C 0.070 3.930 13 C 0.117 3.883 14 C -0.018 4.018 15 N -0.434 5.434 16 C 0.012 3.988 17 C 0.446 3.554 18 O -0.574 6.574 19 N -0.566 5.566 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.904 5.904 24 Si 0.930 3.070 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 C -0.004 4.004 29 H 0.085 0.915 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.050 0.950 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.072 0.928 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.072 0.928 44 H 0.132 0.868 45 H 0.090 0.910 46 H 0.069 0.931 47 H 0.089 0.911 48 H 0.058 0.942 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.072 0.928 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.564 -17.397 -0.913 30.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.157 4.157 5 C -0.136 4.136 6 C -0.128 4.128 7 H 0.116 0.884 8 C -0.217 4.217 9 C 0.308 3.692 10 O -0.413 6.413 11 N -0.336 5.336 12 C -0.073 4.073 13 C 0.013 3.987 14 C -0.149 4.149 15 N -0.156 5.156 16 C -0.120 4.120 17 C 0.231 3.769 18 O -0.456 6.456 19 N -0.204 5.204 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.545 5.545 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.134 4.134 29 H 0.104 0.896 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.080 0.920 40 H 0.089 0.911 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.150 0.850 45 H 0.109 0.891 46 H 0.088 0.912 47 H 0.107 0.893 48 H 0.076 0.924 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.090 0.910 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -24.898 -15.735 -0.528 29.458 hybrid contribution 1.059 -0.626 -0.091 1.234 sum -23.838 -16.361 -0.618 28.919 Atomic orbital electron populations 1.22742 0.80973 1.02747 1.00053 1.87860 1.19778 1.28290 1.95462 1.22564 0.94214 0.84484 1.00424 1.21579 0.92975 0.97576 1.03529 1.21301 0.92331 0.96047 1.03911 1.21270 0.96688 0.94084 1.00798 0.88374 1.22121 1.02708 1.01206 0.95711 1.20702 0.81677 0.91403 0.75455 1.90703 1.60491 1.40850 1.49260 1.47830 1.05832 1.07246 1.72734 1.22009 0.95581 0.87536 1.02137 1.22799 0.94313 0.85126 0.96441 1.24391 0.94746 0.97897 0.97847 1.68781 1.01535 1.42166 1.03109 1.22490 0.90266 0.97817 1.01449 1.19644 0.82915 0.87960 0.86416 1.90534 1.76000 1.36048 1.43069 1.41854 1.04051 1.29755 1.44715 1.19655 0.86905 1.10039 1.26231 0.88007 1.25235 0.97487 0.97697 0.97451 1.69605 1.13849 1.31835 1.39235 0.85927 0.78497 0.80251 0.79609 1.19937 1.20982 1.19885 1.24339 0.93621 0.97547 0.97910 0.89636 0.94041 0.94047 0.93186 0.93187 0.91029 0.90702 0.90955 0.90812 0.90916 0.91972 0.91096 0.91700 0.90435 0.90921 0.85001 0.89134 0.91246 0.89279 0.92359 0.77584 0.91873 0.90990 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.28 16 2 O -0.39 -3.28 10.70 -35.23 -0.38 -3.66 16 3 C 0.06 0.41 5.94 37.15 0.22 0.63 16 4 C -0.12 -0.75 5.34 -26.73 -0.14 -0.90 16 5 C -0.10 -0.73 4.03 -26.73 -0.11 -0.83 16 6 C -0.11 -0.77 1.92 -91.77 -0.18 -0.95 16 7 H 0.10 0.55 7.40 -51.93 -0.38 0.17 16 8 C -0.16 -0.94 8.58 37.16 0.32 -0.62 16 9 C 0.52 5.66 7.08 -10.99 -0.08 5.58 16 10 O -0.54 -7.92 15.43 5.55 0.09 -7.84 16 11 N -0.60 -6.08 3.11 -173.62 -0.54 -6.62 16 12 C 0.07 0.48 7.47 59.85 0.45 0.93 16 13 C 0.12 1.47 4.55 -67.72 -0.31 1.16 16 14 C -0.02 -0.23 7.24 -7.54 -0.05 -0.29 16 15 N -0.43 -7.23 5.82 -246.09 -1.43 -8.66 16 16 C 0.01 0.21 5.30 -4.97 -0.03 0.18 16 17 C 0.45 10.64 7.85 -10.98 -0.09 10.56 16 18 O -0.57 -16.00 16.01 5.55 0.09 -15.91 16 19 N -0.57 -14.37 5.29 -10.96 -0.06 -14.43 16 20 C -0.30 -8.38 9.68 -14.94 -0.14 -8.52 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 24 Si 0.93 21.12 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 28 C 0.00 -0.06 7.13 -7.54 -0.05 -0.12 16 29 H 0.09 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.45 6.57 -51.93 -0.34 0.11 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.07 0.62 7.95 -51.93 -0.41 0.21 16 38 H 0.07 0.37 4.53 -51.93 -0.24 0.14 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.33 6.57 -51.93 -0.34 -0.01 16 41 H 0.06 0.40 6.95 -51.93 -0.36 0.04 16 42 H 0.08 0.36 6.00 -51.93 -0.31 0.05 16 43 H 0.07 0.50 6.19 -51.93 -0.32 0.18 16 44 H 0.13 1.91 7.28 -51.93 -0.38 1.53 16 45 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 46 H 0.07 0.74 6.74 -51.93 -0.35 0.39 16 47 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 48 H 0.06 0.88 7.30 -51.93 -0.38 0.50 16 49 H 0.39 9.40 7.90 -40.82 -0.32 9.08 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.07 0.89 5.85 -51.93 -0.30 0.59 16 52 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 411.09 15.07 6.20 6.20 Total: -1.00 -34.84 411.09 -8.11 -42.95 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -8.60 Total: 7.04 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 0.82 Total: 8.61 kcal Atomic # 7 Polarization: -52.18 SS G_CDS: -1.31 Total: -53.48 kcal Atomic # 8 Polarization: -27.20 SS G_CDS: -0.20 Total: -27.41 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -34.84 -8.11 -42.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754584231.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.834 kcal (2) G-P(sol) polarization free energy of solvation -34.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds