Wall clock time and date at job start Wed Apr 1 2020 01:52:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42900 * 113.99958 * 2 1 4 4 C 1.52994 * 109.47102 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46888 * 180.02562 * 4 3 2 6 6 C 1.53005 * 109.47032 * 180.02562 * 5 4 3 7 7 H 1.08993 * 109.47537 * 54.99253 * 6 5 4 8 8 C 1.53002 * 109.46620 * 294.99570 * 6 5 4 9 9 C 1.50695 * 109.47142 * 174.99794 * 6 5 4 10 10 O 1.21283 * 120.00333 * 359.97438 * 9 6 5 11 11 N 1.34777 * 120.00084 * 179.97438 * 9 6 5 12 12 C 1.46500 * 119.99723 * 359.97438 * 11 9 6 13 13 C 1.46500 * 120.00159 * 180.02562 * 11 9 6 14 14 C 1.53514 * 114.16894 * 239.99852 * 13 11 9 15 15 N 1.47482 * 87.93039 * 220.32940 * 14 13 11 16 16 C 1.46901 * 110.99764 * 138.70591 * 15 14 13 17 17 C 1.50701 * 109.46921 * 169.99672 * 16 15 14 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47117 * 59.99412 * 24 22 20 26 26 H 1.48498 * 109.47600 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46756 * 300.00019 * 24 22 20 28 28 C 1.47480 * 87.83699 * 27.01095 * 15 14 13 29 29 H 1.09006 * 109.46714 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46868 * 299.99615 * 1 2 3 31 31 H 1.08998 * 109.47046 * 59.99934 * 1 2 3 32 32 H 1.09000 * 109.46725 * 59.99878 * 3 2 1 33 33 H 1.09004 * 109.46882 * 300.00345 * 3 2 1 34 34 H 1.09000 * 109.47420 * 60.00316 * 4 3 2 35 35 H 1.09001 * 109.47075 * 300.00144 * 4 3 2 36 36 H 1.08992 * 109.47678 * 59.99974 * 5 4 3 37 37 H 1.08996 * 109.46755 * 299.99477 * 5 4 3 38 38 H 1.08999 * 109.47032 * 179.97438 * 8 6 5 39 39 H 1.09000 * 109.47227 * 300.00182 * 8 6 5 40 40 H 1.08998 * 109.47276 * 60.00398 * 8 6 5 41 41 H 1.09005 * 109.47136 * 269.99642 * 12 11 9 42 42 H 1.09000 * 109.47308 * 30.00169 * 12 11 9 43 43 H 1.09001 * 109.47074 * 150.00738 * 12 11 9 44 44 H 1.08997 * 113.25620 * 12.95121 * 13 11 9 45 45 H 1.08994 * 113.47382 * 105.55784 * 14 13 11 46 46 H 1.09003 * 113.47448 * 335.09691 * 14 13 11 47 47 H 1.09002 * 109.47401 * 49.99700 * 16 15 14 48 48 H 1.09001 * 109.46874 * 289.99713 * 16 15 14 49 49 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 50 50 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 51 51 H 1.08999 * 113.47664 * 87.75895 * 28 15 14 52 52 H 1.08994 * 113.47488 * 218.22090 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1577 2.5824 0.0013 6 6 5.6830 2.4617 0.0013 7 1 5.9987 1.8457 -0.8406 8 6 6.1431 1.8132 1.3085 9 6 6.2955 3.8330 -0.1220 10 8 5.5823 4.8107 -0.2024 11 7 7.6358 3.9731 -0.1428 12 6 8.4972 2.7921 -0.0451 13 6 8.2312 5.3063 -0.2620 14 6 9.1187 5.4898 -1.5012 15 7 10.0548 6.2501 -0.6522 16 6 11.4477 5.8985 -0.9588 17 6 12.3740 6.8588 -0.2582 18 8 11.9186 7.7482 0.4293 19 7 13.7086 6.7287 -0.3948 20 6 14.5513 7.6020 0.2431 21 1 14.1457 8.3944 0.8546 22 6 15.9270 7.4682 0.1019 23 7 16.4205 6.5042 -0.6426 24 14 17.0753 8.6576 0.9715 25 1 16.8554 8.5753 2.4378 26 1 18.4834 8.3020 0.6619 27 1 16.7998 10.0408 0.5065 28 6 9.5546 5.4739 0.4977 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8463 0.8900 33 1 1.6886 1.8464 -0.8900 34 1 3.8575 0.6436 -0.8891 35 1 3.8567 0.6439 0.8909 36 1 3.8357 3.1232 0.8912 37 1 3.8365 3.1235 -0.8887 38 1 7.2297 1.7267 1.3083 39 1 5.8274 2.4292 2.1505 40 1 5.7001 0.8213 1.3976 41 1 8.7175 2.5888 1.0029 42 1 7.9878 1.9336 -0.4826 43 1 9.4275 2.9755 -0.5828 44 1 7.5159 6.1130 -0.1019 45 1 8.6544 6.0914 -2.2825 46 1 9.5354 4.5561 -1.8789 47 1 11.6091 5.9580 -2.0352 48 1 11.6500 4.8835 -0.6167 49 1 14.0728 6.0172 -0.9443 50 1 17.3810 6.4106 -0.7408 51 1 10.0877 4.5360 0.6535 52 1 9.4598 6.0621 1.4104 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754584231.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:52:42 Heat of formation + Delta-G solvation = -104.968617 kcal Electronic energy + Delta-G solvation = -29523.664940 eV Core-core repulsion = 25330.724989 eV Total energy + Delta-G solvation = -4192.939950 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.02417 -40.62724 -39.55970 -38.91428 -36.58914 -36.17929 -35.84287 -33.30376 -32.45285 -31.11953 -28.34100 -27.84591 -27.43005 -26.93756 -26.42542 -25.60898 -24.04450 -22.17894 -21.10388 -20.69474 -20.05705 -19.79785 -18.27618 -17.78072 -17.64014 -17.27097 -17.12672 -16.94237 -16.54115 -16.25393 -16.22516 -15.76778 -15.71970 -15.57546 -15.18973 -14.80107 -14.49468 -14.19377 -14.04358 -13.73540 -13.70971 -13.54367 -13.48220 -13.19792 -13.14102 -13.01766 -12.79604 -12.63470 -12.49956 -12.43648 -12.25048 -12.15217 -12.09216 -11.93470 -11.90761 -11.65796 -11.54327 -11.49701 -10.72396 -10.60812 -10.39822 -10.00753 -9.79513 -9.66509 -8.46420 -5.95001 1.39497 1.41536 1.52086 1.57474 1.84392 2.06052 2.29415 2.78974 2.88596 3.19645 3.34318 3.41031 3.54426 3.71322 3.84943 3.92746 4.07144 4.13543 4.18766 4.22927 4.25608 4.27813 4.37267 4.40333 4.49791 4.51661 4.53130 4.54137 4.60327 4.66399 4.68788 4.73626 4.76880 4.83080 4.85816 4.92282 4.92932 5.03761 5.07954 5.20824 5.29462 5.36783 5.40678 5.43399 5.46224 5.86693 6.06259 6.22428 6.37464 6.61542 7.13576 7.13804 7.56943 8.14128 8.70658 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.040494 B = 0.001524 C = 0.001506 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.297456 B =18371.874439 C =18586.378761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.416 6.416 3 C 0.055 3.945 4 C -0.110 4.110 5 C -0.093 4.093 6 C -0.099 4.099 7 H 0.125 0.875 8 C -0.157 4.157 9 C 0.513 3.487 10 O -0.585 6.585 11 N -0.599 5.599 12 C 0.059 3.941 13 C 0.127 3.873 14 C -0.005 4.005 15 N -0.475 5.475 16 C 0.027 3.973 17 C 0.440 3.560 18 O -0.621 6.621 19 N -0.573 5.573 20 C -0.336 4.336 21 H 0.075 0.925 22 C -0.009 4.009 23 N -0.919 5.919 24 Si 0.990 3.010 25 H -0.272 1.272 26 H -0.268 1.268 27 H -0.274 1.274 28 C -0.001 4.001 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.046 0.954 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.079 0.921 44 H 0.104 0.896 45 H 0.089 0.911 46 H 0.100 0.900 47 H 0.110 0.890 48 H 0.091 0.909 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.096 0.904 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.149 -20.109 -1.555 31.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.336 6.336 3 C -0.021 4.021 4 C -0.147 4.147 5 C -0.131 4.131 6 C -0.120 4.120 7 H 0.143 0.857 8 C -0.214 4.214 9 C 0.303 3.697 10 O -0.465 6.465 11 N -0.331 5.331 12 C -0.082 4.082 13 C 0.022 3.978 14 C -0.134 4.134 15 N -0.198 5.198 16 C -0.105 4.105 17 C 0.227 3.773 18 O -0.507 6.507 19 N -0.211 5.211 20 C -0.466 4.466 21 H 0.093 0.907 22 C -0.209 4.209 23 N -0.559 5.559 24 Si 0.814 3.186 25 H -0.198 1.198 26 H -0.193 1.193 27 H -0.200 1.200 28 C -0.131 4.131 29 H 0.115 0.885 30 H 0.066 0.934 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.103 0.897 39 H 0.065 0.935 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.097 0.903 44 H 0.122 0.878 45 H 0.107 0.893 46 H 0.118 0.882 47 H 0.128 0.872 48 H 0.109 0.891 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.114 0.886 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -24.469 -18.502 -1.188 30.700 hybrid contribution 0.862 0.223 0.117 0.898 sum -23.607 -18.280 -1.071 29.876 Atomic orbital electron populations 1.22913 0.79761 1.03779 1.00683 1.87817 1.21258 1.28891 1.95591 1.22629 0.94691 0.84218 1.00555 1.21491 0.92470 0.96632 1.04121 1.21219 0.92847 0.96503 1.02545 1.21302 0.95999 0.92015 1.02639 0.85746 1.22132 1.03606 1.01568 0.94112 1.21437 0.81615 0.92344 0.74317 1.90685 1.61628 1.42712 1.51489 1.47874 1.06074 1.07124 1.72025 1.22346 0.95611 0.86894 1.03347 1.22356 0.93170 0.86126 0.96174 1.24372 0.93263 0.98575 0.97197 1.68703 1.01521 1.44359 1.05182 1.22363 0.89318 0.97125 1.01684 1.20817 0.83012 0.88070 0.85394 1.90501 1.76797 1.38351 1.45085 1.41904 1.04640 1.29657 1.44870 1.19601 0.88192 1.10949 1.27809 0.90675 1.25968 0.98173 0.99075 0.97685 1.69654 1.14533 1.32432 1.39321 0.85036 0.77081 0.78049 0.78459 1.19762 1.19268 1.19952 1.24342 0.94689 0.97707 0.96371 0.88479 0.93427 0.93426 0.93114 0.93104 0.90339 0.90042 0.92413 0.92242 0.89674 0.93462 0.89285 0.90646 0.87562 0.90272 0.87795 0.89298 0.88173 0.87201 0.89103 0.76898 0.91264 0.88583 0.91578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.24 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.44 10.70 -148.98 -1.59 -8.03 16 3 C 0.06 0.72 5.94 71.98 0.43 1.15 16 4 C -0.11 -1.20 5.34 30.59 0.16 -1.04 16 5 C -0.09 -1.31 4.03 30.60 0.12 -1.18 16 6 C -0.10 -1.21 1.92 -11.54 -0.02 -1.24 16 7 H 0.12 0.92 7.40 -2.39 -0.02 0.91 16 8 C -0.16 -1.42 8.58 71.98 0.62 -0.80 16 9 C 0.51 10.71 7.08 87.66 0.62 11.33 16 10 O -0.59 -17.78 15.43 -3.04 -0.05 -17.83 16 11 N -0.60 -11.02 3.11 -821.59 -2.56 -13.57 16 12 C 0.06 0.59 7.47 127.77 0.95 1.54 16 13 C 0.13 3.13 4.55 45.45 0.21 3.33 16 14 C 0.00 -0.11 7.24 83.58 0.61 0.50 16 15 N -0.47 -15.48 5.82 -932.48 -5.43 -20.91 16 16 C 0.03 0.89 5.30 85.56 0.45 1.34 16 17 C 0.44 21.17 7.85 87.66 0.69 21.86 16 18 O -0.62 -35.81 16.01 -3.07 -0.05 -35.86 16 19 N -0.57 -29.31 5.29 -306.98 -1.62 -30.93 16 20 C -0.34 -19.21 9.68 84.04 0.81 -18.40 16 21 H 0.08 4.62 7.16 -2.91 -0.02 4.60 16 22 C -0.01 -0.48 5.50 84.92 0.47 -0.01 16 23 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16 24 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 25 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 27 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 28 C 0.00 -0.04 7.13 83.58 0.60 0.56 16 29 H 0.10 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.80 6.57 -2.39 -0.02 0.78 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 1.01 7.95 -2.39 -0.02 0.99 16 38 H 0.08 0.56 4.53 -2.39 -0.01 0.55 16 39 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.09 0.52 6.57 -2.39 -0.02 0.50 16 41 H 0.08 0.64 6.95 -2.38 -0.02 0.62 16 42 H 0.11 0.48 6.00 -2.39 -0.01 0.47 16 43 H 0.08 0.73 6.19 -2.39 -0.01 0.72 16 44 H 0.10 3.17 7.28 -2.39 -0.02 3.15 16 45 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 46 H 0.10 1.74 6.74 -2.39 -0.02 1.73 16 47 H 0.11 3.20 8.08 -2.39 -0.02 3.18 16 48 H 0.09 2.43 7.30 -2.39 -0.02 2.41 16 49 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 50 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 51 H 0.10 2.16 5.85 -2.39 -0.01 2.14 16 52 H 0.07 2.18 8.14 -2.39 -0.02 2.16 16 Total: -1.00 -78.64 411.09 -0.83 -79.47 By element: Atomic # 1 Polarization: 30.74 SS G_CDS: 0.19 Total: 30.93 kcal Atomic # 6 Polarization: 12.47 SS G_CDS: 7.96 Total: 20.43 kcal Atomic # 7 Polarization: -104.80 SS G_CDS: -9.32 Total: -114.13 kcal Atomic # 8 Polarization: -60.03 SS G_CDS: -1.69 Total: -61.72 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -78.64 -0.83 -79.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754584231.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.494 kcal (2) G-P(sol) polarization free energy of solvation -78.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds