Wall clock time and date at job start Wed Apr 1 2020 00:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47336 * 2 1 4 4 O 1.42903 * 109.47333 * 120.00324 * 2 1 3 5 5 C 1.42896 * 114.00464 * 149.99975 * 4 2 1 6 6 C 1.53002 * 109.47470 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47231 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46844 * 179.97438 * 7 6 5 9 9 O 1.21270 * 120.00381 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99796 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99818 * 359.97438 * 10 8 7 12 12 C 1.46494 * 120.00072 * 180.02562 * 10 8 7 13 13 C 1.53937 * 113.73257 * 239.99677 * 12 10 8 14 14 N 1.47955 * 86.18157 * 269.35781 * 13 12 10 15 15 C 1.46896 * 111.00525 * 222.41550 * 14 13 12 16 16 C 1.50703 * 109.47363 * 169.99959 * 15 14 13 17 17 O 1.21288 * 120.00165 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99853 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99841 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99746 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99567 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00700 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99728 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47201 * 90.00124 * 23 21 19 25 25 H 1.48500 * 109.46985 * 210.00443 * 23 21 19 26 26 H 1.48501 * 109.47070 * 330.00342 * 23 21 19 27 27 C 1.47961 * 90.76430 * 335.31007 * 14 13 12 28 28 H 1.09002 * 109.47157 * 299.99658 * 1 2 3 29 29 H 1.08997 * 109.47326 * 59.99827 * 1 2 3 30 30 H 1.09005 * 109.47626 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47175 * 239.99826 * 2 1 3 32 32 H 1.09005 * 109.47230 * 300.00179 * 3 2 1 33 33 H 1.08998 * 109.47131 * 59.99799 * 3 2 1 34 34 H 1.08999 * 109.47204 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47144 * 59.99547 * 5 4 2 36 36 H 1.09007 * 109.46670 * 299.99695 * 5 4 2 37 37 H 1.08993 * 109.47019 * 59.99599 * 6 5 4 38 38 H 1.09001 * 109.46709 * 299.99926 * 6 5 4 39 39 H 1.09000 * 109.47351 * 59.99447 * 7 6 5 40 40 H 1.09007 * 109.46702 * 299.99449 * 7 6 5 41 41 H 1.09008 * 109.46984 * 270.00101 * 11 10 8 42 42 H 1.08993 * 109.47005 * 30.00062 * 11 10 8 43 43 H 1.08998 * 109.46819 * 150.00845 * 11 10 8 44 44 H 1.09001 * 113.00985 * 11.62465 * 12 10 8 45 45 H 1.09005 * 113.75745 * 23.67504 * 13 12 10 46 46 H 1.08996 * 113.76539 * 155.04190 * 13 12 10 47 47 H 1.08998 * 109.47190 * 290.00447 * 15 14 13 48 48 H 1.09002 * 109.47036 * 50.00132 * 15 14 13 49 49 H 0.97001 * 120.00133 * 0.02562 * 18 16 15 50 50 H 0.96992 * 120.00526 * 179.97438 * 22 21 19 51 51 H 1.09002 * 113.75838 * 270.37219 * 27 14 13 52 52 H 1.09002 * 113.76303 * 139.00391 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9886 6 6 3.6755 -2.0093 2.2942 7 6 5.0244 -2.7055 2.1036 8 6 5.4279 -3.3794 3.3897 9 8 4.7079 -3.3092 4.3629 10 7 6.5897 -4.0592 3.4586 11 6 7.4599 -4.1435 2.2829 12 6 6.9818 -4.7148 4.7086 13 6 8.3143 -4.2032 5.2850 14 7 8.9551 -5.2759 4.4927 15 6 10.0040 -5.9495 5.2698 16 6 10.4620 -7.1819 4.5331 17 8 9.9632 -7.4709 3.4659 18 7 11.4257 -7.9628 5.0601 19 6 11.8419 -9.0843 4.3901 20 1 11.3978 -9.3416 3.4400 21 6 12.8359 -9.8891 4.9333 22 7 13.3767 -9.5757 6.0892 23 14 13.4036 -11.4167 4.0201 24 1 14.5284 -11.0642 3.1170 25 1 13.8555 -12.4386 4.9982 26 1 12.2779 -11.9615 3.2193 27 6 7.7006 -6.0605 4.5036 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4424 0.0005 35 1 4.0199 -0.5874 0.7124 36 1 3.1808 -2.0708 0.1986 37 1 2.9214 -2.7464 2.5698 38 1 3.7604 -1.2634 3.0844 39 1 5.7783 -1.9681 1.8280 40 1 4.9398 -3.4514 1.3132 41 1 7.1919 -5.0212 1.6947 42 1 7.3369 -3.2473 1.6750 43 1 8.4981 -4.2249 2.6046 44 1 6.1744 -4.7555 5.4398 45 1 8.5777 -3.1977 4.9566 46 1 8.4074 -4.3379 6.3626 47 1 10.8475 -5.2725 5.4049 48 1 9.6076 -6.2350 6.2442 49 1 11.8243 -7.7319 5.9137 50 1 14.0702 -10.1377 6.4685 51 1 7.6140 -6.7384 5.3527 52 1 7.4735 -6.5390 3.5509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754588009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:33 Heat of formation + Delta-G solvation = -85.183180 kcal Electronic energy + Delta-G solvation = -29344.761513 eV Core-core repulsion = 25152.679523 eV Total energy + Delta-G solvation = -4192.081989 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76631 -39.25961 -38.68953 -37.69098 -34.83494 -34.49787 -33.89463 -32.41401 -31.30501 -30.03089 -27.73618 -27.19065 -27.00326 -26.02349 -25.25505 -23.51949 -22.25046 -21.70971 -20.24173 -19.29692 -18.60000 -17.95352 -17.45611 -17.01915 -16.54041 -16.29109 -15.93206 -15.62285 -15.39943 -15.02959 -14.88979 -14.62002 -14.34023 -13.88350 -13.71987 -13.55339 -13.29736 -13.22170 -13.01633 -12.77296 -12.68210 -12.51680 -12.34659 -12.33385 -11.98711 -11.90868 -11.85734 -11.57632 -11.51964 -11.49306 -11.16089 -11.10667 -11.01851 -10.92033 -10.77259 -10.41900 -10.24186 -9.90482 -9.87290 -9.53080 -8.73044 -8.61287 -8.26221 -7.99166 -6.44379 -3.85384 2.51961 2.79523 3.15569 3.24499 3.29976 3.33298 3.86129 3.97208 4.18735 4.35086 4.47154 4.54245 4.58591 4.68357 4.74243 4.80575 4.86128 4.95609 5.00425 5.03646 5.11620 5.17200 5.19707 5.21289 5.32358 5.35314 5.39429 5.41983 5.45791 5.48955 5.62086 5.67061 5.70303 5.75056 5.77080 5.77806 5.83690 5.85903 6.00773 6.11166 6.12407 6.22320 6.53338 6.58899 6.91745 7.10965 7.37553 7.52341 8.02712 8.09150 8.58205 9.15046 9.51262 10.02545 10.73319 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030469 B = 0.001524 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.733247 B =18363.037363 C =18822.574932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.080 3.920 3 C -0.176 4.176 4 O -0.382 6.382 5 C 0.063 3.937 6 C -0.103 4.103 7 C -0.135 4.135 8 C 0.515 3.485 9 O -0.545 6.545 10 N -0.589 5.589 11 C 0.070 3.930 12 C 0.110 3.890 13 C -0.012 4.012 14 N -0.452 5.452 15 C 0.009 3.991 16 C 0.443 3.557 17 O -0.580 6.580 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.014 3.986 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.059 0.941 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.056 0.944 35 H 0.048 0.952 36 H 0.049 0.951 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.057 0.943 42 H 0.063 0.937 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.090 0.910 48 H 0.055 0.945 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.077 0.923 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.110 19.063 -8.447 27.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.022 3.978 3 C -0.233 4.233 4 O -0.302 6.302 5 C -0.014 4.014 6 C -0.141 4.141 7 C -0.175 4.175 8 C 0.303 3.697 9 O -0.422 6.422 10 N -0.321 5.321 11 C -0.072 4.072 12 C 0.005 3.995 13 C -0.143 4.143 14 N -0.175 5.175 15 C -0.123 4.123 16 C 0.229 3.771 17 O -0.464 6.464 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.115 4.115 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.075 0.925 42 H 0.081 0.919 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.108 0.892 46 H 0.096 0.904 47 H 0.108 0.892 48 H 0.073 0.927 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.095 0.905 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -18.423 18.936 -9.001 27.910 hybrid contribution 0.838 -0.940 0.684 1.433 sum -17.584 17.995 -8.317 26.499 Atomic orbital electron populations 1.21867 0.93631 1.02778 1.02501 1.22077 0.95044 0.92446 0.88194 1.22307 1.01571 0.96849 1.02600 1.87938 1.36673 1.69992 1.35550 1.22539 0.85597 0.95348 0.97911 1.21221 0.95682 1.00405 0.96797 1.21564 0.98595 1.00925 0.96420 1.20605 0.80405 0.78526 0.90150 1.90691 1.52123 1.61068 1.38331 1.47492 1.20465 1.51817 1.12320 1.22023 0.97552 1.00960 0.86698 1.22475 0.96753 0.93434 0.86831 1.24474 0.93668 0.98384 0.97726 1.68390 1.04344 1.06298 1.38468 1.22470 0.97304 0.96915 0.95627 1.19675 0.83989 0.85666 0.87795 1.90510 1.58931 1.73863 1.23133 1.41875 1.33593 1.22965 1.21602 1.19690 1.17999 1.00258 1.04971 0.87943 1.25255 0.96733 0.99661 0.96221 1.69606 1.27428 1.39701 1.17543 0.85864 0.79047 0.80595 0.78816 1.20389 1.20922 1.19445 1.24167 0.89030 0.94660 1.03672 0.91746 0.91311 0.91951 0.92288 0.91699 0.91724 0.92473 0.93353 0.93277 0.90308 0.90357 0.88661 0.88612 0.92472 0.91862 0.87693 0.87484 0.89231 0.90407 0.89161 0.92668 0.77507 0.91852 0.90495 0.88380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.56 37.16 0.36 -0.54 16 2 C 0.08 0.55 3.34 -26.74 -0.09 0.46 16 3 C -0.18 -1.04 9.53 37.16 0.35 -0.69 16 4 O -0.38 -3.62 9.99 -35.23 -0.35 -3.97 16 5 C 0.06 0.48 5.75 37.16 0.21 0.70 16 6 C -0.10 -0.95 4.87 -26.73 -0.13 -1.08 16 7 C -0.14 -1.12 4.25 -27.89 -0.12 -1.24 16 8 C 0.51 6.29 7.67 -10.98 -0.08 6.20 16 9 O -0.54 -8.55 15.47 5.57 0.09 -8.46 16 10 N -0.59 -7.11 3.09 -175.28 -0.54 -7.65 16 11 C 0.07 0.75 9.19 59.85 0.55 1.30 16 12 C 0.11 1.43 4.51 -69.63 -0.31 1.12 16 13 C -0.01 -0.15 7.45 -2.77 -0.02 -0.17 16 14 N -0.45 -6.99 4.08 -239.90 -0.98 -7.97 16 15 C 0.01 0.15 5.31 -4.98 -0.03 0.12 16 16 C 0.44 10.16 7.59 -10.98 -0.08 10.07 16 17 O -0.58 -15.11 15.12 5.55 0.08 -15.02 16 18 N -0.56 -14.03 5.29 -10.96 -0.06 -14.09 16 19 C -0.30 -8.24 9.68 -14.93 -0.14 -8.39 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.30 13.05 55.50 0.72 -23.58 16 23 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 24 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 27 C 0.01 0.21 5.99 -2.77 -0.02 0.20 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.06 0.35 7.79 -51.93 -0.40 -0.06 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.06 0.34 7.87 -51.93 -0.41 -0.07 16 35 H 0.05 0.32 7.87 -51.93 -0.41 -0.09 16 36 H 0.05 0.32 8.09 -51.93 -0.42 -0.10 16 37 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 38 H 0.08 0.83 8.10 -51.93 -0.42 0.40 16 39 H 0.10 0.61 7.40 -51.93 -0.38 0.23 16 40 H 0.10 0.65 8.11 -51.93 -0.42 0.23 16 41 H 0.06 0.62 8.14 -51.92 -0.42 0.20 16 42 H 0.06 0.49 6.44 -51.93 -0.33 0.15 16 43 H 0.10 1.35 6.07 -51.93 -0.32 1.03 16 44 H 0.11 1.44 7.25 -51.93 -0.38 1.06 16 45 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.08 0.86 7.79 -51.93 -0.40 0.46 16 47 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 48 H 0.06 0.85 7.69 -51.93 -0.40 0.45 16 49 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 50 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 51 H 0.08 1.15 7.78 -51.93 -0.40 0.75 16 52 H 0.10 1.65 7.76 -51.93 -0.40 1.24 16 LS Contribution 419.77 15.07 6.33 6.33 Total: -1.00 -32.87 419.77 -8.52 -41.39 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -9.14 Total: 8.62 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: 0.35 Total: 8.59 kcal Atomic # 7 Polarization: -52.43 SS G_CDS: -0.85 Total: -53.28 kcal Atomic # 8 Polarization: -27.27 SS G_CDS: -0.18 Total: -27.46 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -32.87 -8.52 -41.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754588009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.791 kcal (2) G-P(sol) polarization free energy of solvation -32.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.524 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds