Wall clock time and date at job start Wed Apr 1 2020 00:08:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47336 * 2 1 4 4 O 1.42903 * 109.47333 * 120.00324 * 2 1 3 5 5 C 1.42896 * 114.00464 * 149.99975 * 4 2 1 6 6 C 1.53002 * 109.47470 * 180.02562 * 5 4 2 7 7 C 1.52995 * 109.47231 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.46844 * 179.97438 * 7 6 5 9 9 O 1.21270 * 120.00381 * 359.97438 * 8 7 6 10 10 N 1.34782 * 119.99796 * 180.02562 * 8 7 6 11 11 C 1.46505 * 119.99818 * 359.97438 * 10 8 7 12 12 C 1.46494 * 120.00072 * 180.02562 * 10 8 7 13 13 C 1.53937 * 113.73257 * 239.99677 * 12 10 8 14 14 N 1.47955 * 86.18157 * 269.35781 * 13 12 10 15 15 C 1.46896 * 111.00525 * 222.41550 * 14 13 12 16 16 C 1.50703 * 109.47363 * 169.99959 * 15 14 13 17 17 O 1.21288 * 120.00165 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99853 * 179.97438 * 16 15 14 19 19 C 1.37100 * 119.99841 * 179.97438 * 18 16 15 20 20 H 1.07995 * 119.99746 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99567 * 179.97438 * 19 18 16 22 22 N 1.31411 * 120.00700 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99728 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47201 * 90.00124 * 23 21 19 25 25 H 1.48500 * 109.46985 * 210.00443 * 23 21 19 26 26 H 1.48501 * 109.47070 * 330.00342 * 23 21 19 27 27 C 1.47961 * 90.76430 * 335.31007 * 14 13 12 28 28 H 1.09002 * 109.47157 * 299.99658 * 1 2 3 29 29 H 1.08997 * 109.47326 * 59.99827 * 1 2 3 30 30 H 1.09005 * 109.47626 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47175 * 239.99826 * 2 1 3 32 32 H 1.09005 * 109.47230 * 300.00179 * 3 2 1 33 33 H 1.08998 * 109.47131 * 59.99799 * 3 2 1 34 34 H 1.08999 * 109.47204 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.47144 * 59.99547 * 5 4 2 36 36 H 1.09007 * 109.46670 * 299.99695 * 5 4 2 37 37 H 1.08993 * 109.47019 * 59.99599 * 6 5 4 38 38 H 1.09001 * 109.46709 * 299.99926 * 6 5 4 39 39 H 1.09000 * 109.47351 * 59.99447 * 7 6 5 40 40 H 1.09007 * 109.46702 * 299.99449 * 7 6 5 41 41 H 1.09008 * 109.46984 * 270.00101 * 11 10 8 42 42 H 1.08993 * 109.47005 * 30.00062 * 11 10 8 43 43 H 1.08998 * 109.46819 * 150.00845 * 11 10 8 44 44 H 1.09001 * 113.00985 * 11.62465 * 12 10 8 45 45 H 1.09005 * 113.75745 * 23.67504 * 13 12 10 46 46 H 1.08996 * 113.76539 * 155.04190 * 13 12 10 47 47 H 1.08998 * 109.47190 * 290.00447 * 15 14 13 48 48 H 1.09002 * 109.47036 * 50.00132 * 15 14 13 49 49 H 0.97001 * 120.00133 * 0.02562 * 18 16 15 50 50 H 0.96992 * 120.00526 * 179.97438 * 22 21 19 51 51 H 1.09002 * 113.75838 * 270.37219 * 27 14 13 52 52 H 1.09002 * 113.76303 * 139.00391 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 3.2660 -1.3245 0.9886 6 6 3.6755 -2.0093 2.2942 7 6 5.0244 -2.7055 2.1036 8 6 5.4279 -3.3794 3.3897 9 8 4.7079 -3.3092 4.3629 10 7 6.5897 -4.0592 3.4586 11 6 7.4599 -4.1435 2.2829 12 6 6.9818 -4.7148 4.7086 13 6 8.3143 -4.2032 5.2850 14 7 8.9551 -5.2759 4.4927 15 6 10.0040 -5.9495 5.2698 16 6 10.4620 -7.1819 4.5331 17 8 9.9632 -7.4709 3.4659 18 7 11.4257 -7.9628 5.0601 19 6 11.8419 -9.0843 4.3901 20 1 11.3978 -9.3416 3.4400 21 6 12.8359 -9.8891 4.9333 22 7 13.3767 -9.5757 6.0892 23 14 13.4036 -11.4167 4.0201 24 1 14.5284 -11.0642 3.1170 25 1 13.8555 -12.4386 4.9982 26 1 12.2779 -11.9615 3.2193 27 6 7.7006 -6.0605 4.5036 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.6767 1.9563 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4424 0.0005 35 1 4.0199 -0.5874 0.7124 36 1 3.1808 -2.0708 0.1986 37 1 2.9214 -2.7464 2.5698 38 1 3.7604 -1.2634 3.0844 39 1 5.7783 -1.9681 1.8280 40 1 4.9398 -3.4514 1.3132 41 1 7.1919 -5.0212 1.6947 42 1 7.3369 -3.2473 1.6750 43 1 8.4981 -4.2249 2.6046 44 1 6.1744 -4.7555 5.4398 45 1 8.5777 -3.1977 4.9566 46 1 8.4074 -4.3379 6.3626 47 1 10.8475 -5.2725 5.4049 48 1 9.6076 -6.2350 6.2442 49 1 11.8243 -7.7319 5.9137 50 1 14.0702 -10.1377 6.4685 51 1 7.6140 -6.7384 5.3527 52 1 7.4735 -6.5390 3.5509 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754588009.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:32 Heat of formation + Delta-G solvation = -108.195104 kcal Electronic energy + Delta-G solvation = -29345.759385 eV Core-core repulsion = 25152.679523 eV Total energy + Delta-G solvation = -4193.079861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.86857 -40.42749 -39.48558 -39.20978 -36.06203 -35.72401 -35.14844 -33.29560 -33.01386 -31.33756 -28.31551 -28.07057 -27.87314 -27.19166 -26.84165 -24.90084 -23.04864 -22.23965 -21.19129 -21.03228 -19.91724 -19.58013 -18.36495 -17.88109 -17.72294 -17.30306 -17.05372 -16.74731 -16.42122 -16.36530 -16.15907 -15.74624 -15.47911 -15.24352 -14.94542 -14.79780 -14.30643 -14.06050 -13.87539 -13.74745 -13.59207 -13.46549 -13.29830 -13.20775 -13.11624 -13.01851 -12.97496 -12.69879 -12.59409 -12.42340 -12.38943 -12.16705 -12.13678 -12.11651 -11.92230 -11.80966 -11.53992 -11.48904 -10.88297 -10.46780 -10.31433 -10.00622 -9.73518 -9.61855 -8.46405 -5.94892 1.37722 1.41636 1.53921 1.57930 1.90310 2.06208 2.28566 2.74053 2.79250 3.20503 3.26794 3.48300 3.62403 3.78344 3.96606 3.98902 4.12901 4.15660 4.21331 4.26540 4.28332 4.32585 4.41635 4.45898 4.48194 4.51827 4.54100 4.55989 4.62320 4.70177 4.74220 4.75969 4.83263 4.89287 4.91300 4.93945 4.96010 5.13057 5.20086 5.26865 5.31104 5.31786 5.34766 5.41324 5.58010 5.84060 6.04949 6.37817 6.44273 6.60484 7.13241 7.14301 7.57022 8.12306 8.71017 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030469 B = 0.001524 C = 0.001487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.733247 B =18363.037363 C =18822.574932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.072 3.928 3 C -0.173 4.173 4 O -0.410 6.410 5 C 0.064 3.936 6 C -0.098 4.098 7 C -0.126 4.126 8 C 0.510 3.490 9 O -0.586 6.586 10 N -0.590 5.590 11 C 0.073 3.927 12 C 0.116 3.884 13 C 0.001 3.999 14 N -0.465 5.465 15 C 0.021 3.979 16 C 0.442 3.558 17 O -0.615 6.615 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.921 5.921 23 Si 0.991 3.009 24 H -0.271 1.271 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.012 3.988 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.057 0.943 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.059 0.941 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.051 0.949 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.102 0.898 45 H 0.102 0.898 46 H 0.097 0.903 47 H 0.110 0.890 48 H 0.077 0.923 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.074 0.926 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.820 20.301 -9.428 28.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.015 3.985 3 C -0.231 4.231 4 O -0.331 6.331 5 C -0.012 4.012 6 C -0.136 4.136 7 C -0.165 4.165 8 C 0.301 3.699 9 O -0.466 6.466 10 N -0.321 5.321 11 C -0.069 4.069 12 C 0.010 3.990 13 C -0.128 4.128 14 N -0.188 5.188 15 C -0.111 4.111 16 C 0.229 3.771 17 O -0.501 6.501 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.562 5.562 23 Si 0.815 3.185 24 H -0.196 1.196 25 H -0.197 1.197 26 H -0.198 1.198 27 C -0.118 4.118 28 H 0.073 0.927 29 H 0.106 0.894 30 H 0.075 0.925 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.142 0.858 40 H 0.135 0.865 41 H 0.069 0.931 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.120 0.880 45 H 0.120 0.880 46 H 0.115 0.885 47 H 0.128 0.872 48 H 0.095 0.905 49 H 0.229 0.771 50 H 0.086 0.914 51 H 0.093 0.907 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.120 20.195 -9.981 28.910 hybrid contribution 0.684 -1.291 0.974 1.756 sum -17.437 18.904 -9.006 27.249 Atomic orbital electron populations 1.21894 0.93297 1.02569 1.03014 1.22284 0.95452 0.92895 0.87849 1.22291 1.01612 0.96281 1.02896 1.87909 1.37483 1.70509 1.37160 1.22561 0.85549 0.95978 0.97110 1.21127 0.95715 0.99462 0.97283 1.21587 0.98607 1.01691 0.94631 1.21300 0.79684 0.77984 0.90969 1.90675 1.53232 1.62590 1.40109 1.47605 1.20770 1.51382 1.12354 1.22055 0.95962 1.02550 0.86345 1.22345 0.96879 0.92269 0.87469 1.24503 0.92024 0.97812 0.98482 1.68422 1.04084 1.06942 1.39335 1.22378 0.98607 0.94466 0.95641 1.20705 0.82446 0.86511 0.87397 1.90485 1.59692 1.75016 1.24901 1.41946 1.34499 1.22997 1.21799 1.19649 1.19361 1.02165 1.04982 0.90300 1.26004 0.96242 1.02013 0.96924 1.69666 1.27612 1.40657 1.18275 0.84952 0.78411 0.77264 0.77860 1.19645 1.19673 1.19810 1.24094 0.89758 0.95589 1.02341 0.92668 0.89365 0.92519 0.91016 0.90060 0.92768 0.92367 0.91692 0.91838 0.92571 0.92237 0.85793 0.86465 0.93052 0.88234 0.89671 0.87968 0.87978 0.88525 0.87195 0.90508 0.77099 0.91360 0.90739 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 9.56 71.98 0.69 -0.96 16 2 C 0.07 0.90 3.34 30.59 0.10 1.00 16 3 C -0.17 -1.78 9.53 71.98 0.69 -1.10 16 4 O -0.41 -7.46 9.99 -148.98 -1.49 -8.94 16 5 C 0.06 0.88 5.75 71.98 0.41 1.29 16 6 C -0.10 -1.72 4.87 30.59 0.15 -1.57 16 7 C -0.13 -1.81 4.25 29.85 0.13 -1.68 16 8 C 0.51 11.92 7.67 87.66 0.67 12.59 16 9 O -0.59 -18.44 15.47 -3.00 -0.05 -18.49 16 10 N -0.59 -13.53 3.09 -826.84 -2.56 -16.08 16 11 C 0.07 1.43 9.19 127.77 1.17 2.61 16 12 C 0.12 2.93 4.51 46.56 0.21 3.14 16 13 C 0.00 0.03 7.45 86.41 0.64 0.67 16 14 N -0.46 -13.85 4.08 -912.90 -3.72 -17.57 16 15 C 0.02 0.67 5.31 85.56 0.45 1.13 16 16 C 0.44 20.39 7.59 87.66 0.67 21.05 16 17 O -0.62 -32.74 15.12 -3.05 -0.05 -32.79 16 18 N -0.57 -28.98 5.29 -306.99 -1.62 -30.60 16 19 C -0.33 -18.62 9.68 84.04 0.81 -17.81 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 22 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 23 Si 0.99 42.59 29.55 68.60 2.03 44.61 16 24 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 25 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 27 C 0.01 0.36 5.99 86.41 0.52 0.88 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.07 0.69 7.79 -2.39 -0.02 0.67 16 32 H 0.08 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.06 0.58 7.87 -2.39 -0.02 0.56 16 35 H 0.06 0.67 7.87 -2.39 -0.02 0.65 16 36 H 0.06 0.68 8.09 -2.38 -0.02 0.66 16 37 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 38 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 39 H 0.12 1.12 7.40 -2.39 -0.02 1.10 16 40 H 0.12 1.24 8.11 -2.38 -0.02 1.22 16 41 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.10 1.20 6.44 -2.39 -0.02 1.19 16 43 H 0.08 2.08 6.07 -2.39 -0.01 2.07 16 44 H 0.10 2.71 7.25 -2.39 -0.02 2.70 16 45 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 46 H 0.10 1.86 7.79 -2.39 -0.02 1.84 16 47 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 48 H 0.08 2.21 7.69 -2.39 -0.02 2.19 16 49 H 0.40 19.00 7.90 -92.71 -0.73 18.26 16 50 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 51 H 0.07 2.25 7.78 -2.39 -0.02 2.23 16 52 H 0.07 2.58 7.76 -2.39 -0.02 2.57 16 Total: -1.00 -73.11 419.77 0.78 -72.33 By element: Atomic # 1 Polarization: 35.37 SS G_CDS: 0.17 Total: 35.54 kcal Atomic # 6 Polarization: 13.28 SS G_CDS: 7.78 Total: 21.06 kcal Atomic # 7 Polarization: -105.71 SS G_CDS: -7.62 Total: -113.33 kcal Atomic # 8 Polarization: -58.64 SS G_CDS: -1.58 Total: -60.22 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.61 kcal Total: -73.11 0.78 -72.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754588009.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.866 kcal (2) G-P(sol) polarization free energy of solvation -73.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds