Wall clock time and date at job start Wed Apr 1 2020 00:33:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47243 * 2 1 4 4 O 1.42906 * 109.47267 * 119.99997 * 2 1 3 5 5 C 1.42895 * 114.00158 * 149.99882 * 4 2 1 6 6 C 1.50699 * 109.47398 * 180.02562 * 5 4 2 7 7 O 1.21289 * 119.99852 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00539 * 180.02562 * 6 5 4 9 9 C 1.46929 * 120.62558 * 5.04138 * 8 6 5 10 10 C 1.53192 * 108.77243 * 126.41657 * 9 8 6 11 11 C 1.53048 * 109.31412 * 54.63503 * 10 9 8 12 12 H 1.09006 * 109.44625 * 58.64627 * 11 10 9 13 13 N 1.46894 * 109.45999 * 178.61519 * 11 10 9 14 14 C 1.46904 * 110.99838 * 275.06552 * 13 11 10 15 15 C 1.50707 * 109.47048 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99994 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99889 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99756 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00516 * 359.97438 * 18 17 15 20 20 C 1.38957 * 119.99644 * 180.27449 * 18 17 15 21 21 N 1.31411 * 119.99852 * 179.72540 * 20 18 17 22 22 Si 1.86793 * 120.00013 * 359.72144 * 20 18 17 23 23 H 1.48501 * 109.47218 * 90.00214 * 22 20 18 24 24 H 1.48505 * 109.46998 * 209.99853 * 22 20 18 25 25 H 1.48495 * 109.47748 * 330.00237 * 22 20 18 26 26 C 1.53039 * 109.53438 * 298.63611 * 11 10 9 27 27 C 1.46922 * 120.63198 * 185.07043 * 8 6 5 28 28 H 1.09004 * 109.70607 * 113.72854 * 27 8 6 29 29 C 1.52997 * 109.58816 * 353.36912 * 27 8 6 30 30 H 1.09003 * 109.46985 * 299.99729 * 1 2 3 31 31 H 1.08998 * 109.47311 * 59.99870 * 1 2 3 32 32 H 1.09002 * 109.47044 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47103 * 239.99737 * 2 1 3 34 34 H 1.09004 * 109.47099 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47073 * 300.00275 * 3 2 1 36 36 H 1.09003 * 109.46909 * 60.00224 * 3 2 1 37 37 H 1.09005 * 109.47401 * 59.99878 * 5 4 2 38 38 H 1.08998 * 109.47349 * 300.00202 * 5 4 2 39 39 H 1.08997 * 109.58819 * 246.20103 * 9 8 6 40 40 H 1.09001 * 109.58916 * 6.62998 * 9 8 6 41 41 H 1.09000 * 109.50113 * 294.68323 * 10 9 8 42 42 H 1.08997 * 109.49870 * 174.58480 * 10 9 8 43 43 H 1.00907 * 111.00177 * 151.11730 * 13 11 10 44 44 H 1.09000 * 109.46838 * 60.00320 * 14 13 11 45 45 H 1.09001 * 109.46995 * 300.00024 * 14 13 11 46 46 H 0.96998 * 119.99967 * 359.97438 * 17 15 14 47 47 H 0.97000 * 119.99896 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.49442 * 181.31535 * 26 11 10 49 49 H 1.08999 * 109.50267 * 301.40819 * 26 11 10 50 50 H 1.08994 * 109.47275 * 304.33263 * 29 27 8 51 51 H 1.08999 * 109.46913 * 64.33257 * 29 27 8 52 52 H 1.09002 * 109.47378 * 184.33341 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3245 0.9887 6 6 3.6693 -1.9989 2.2746 7 8 2.9492 -1.9286 3.2480 8 7 4.8307 -2.6792 2.3433 9 6 5.7655 -2.6808 1.2098 10 6 7.1454 -2.2400 1.7081 11 6 7.5713 -3.1337 2.8753 12 1 7.5947 -4.1729 2.5469 13 7 8.9086 -2.7352 3.3342 14 6 9.9551 -3.3857 2.5345 15 6 11.3100 -2.9542 3.0338 16 8 11.3954 -2.1805 3.9640 17 7 12.4268 -3.4273 2.4461 18 6 13.6593 -3.0343 2.9000 19 1 13.7354 -2.3454 3.7282 20 6 14.8107 -3.5176 2.2903 21 7 15.9920 -3.1368 2.7219 22 14 14.6792 -4.7087 0.8574 23 1 14.6234 -3.9468 -0.4160 24 1 15.8642 -5.6036 0.8473 25 1 13.4455 -5.5225 1.0016 26 6 6.5722 -2.9847 4.0250 27 6 5.1858 -3.4338 3.5529 28 1 5.2039 -4.5004 3.3286 29 6 4.1560 -3.1580 4.6503 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 4.0200 -0.5874 0.7125 38 1 3.1809 -2.0707 0.1987 39 1 5.8316 -3.6853 0.7920 40 1 5.4144 -1.9873 0.4456 41 1 7.0977 -1.2036 2.0421 42 1 7.8700 -2.3289 0.8987 43 1 9.0280 -2.9339 4.3163 44 1 9.8445 -3.0986 1.4888 45 1 9.8623 -4.4679 2.6260 46 1 12.3585 -4.0457 1.7020 47 1 16.7958 -3.4738 2.2961 48 1 6.8888 -3.6036 4.8646 49 1 6.5298 -1.9412 4.3372 50 1 4.0895 -2.0841 4.8245 51 1 3.1825 -3.5364 4.3385 52 1 4.4623 -3.6569 5.5698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754590960.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:43 Heat of formation + Delta-G solvation = -99.742439 kcal Electronic energy + Delta-G solvation = -30202.765874 eV Core-core repulsion = 26010.052548 eV Total energy + Delta-G solvation = -4192.713326 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.88809 -38.94028 -38.46830 -37.60702 -35.22985 -33.94516 -33.66584 -32.78494 -31.72950 -31.27112 -28.58957 -27.73848 -27.28605 -26.36851 -24.35236 -23.60711 -22.29451 -21.70753 -20.73566 -19.53938 -19.27851 -18.34810 -17.45730 -17.11716 -16.54919 -16.28548 -15.87638 -15.48204 -15.33215 -15.13861 -14.93743 -14.75021 -14.18043 -14.06334 -13.92699 -13.69291 -13.45861 -13.18899 -13.06945 -12.80362 -12.64200 -12.59630 -12.53141 -12.46891 -12.24928 -12.22936 -12.06146 -11.93322 -11.80065 -11.57248 -11.28517 -11.20812 -11.15541 -10.93684 -10.63771 -10.62031 -10.07473 -9.99911 -9.59871 -9.23709 -8.88060 -8.61189 -8.23213 -8.18339 -6.33301 -3.84843 2.32004 2.36283 2.99458 3.03983 3.12482 3.39263 3.71044 3.95336 4.07792 4.16803 4.40581 4.45790 4.55304 4.59655 4.68057 4.72366 4.74113 4.75292 4.80837 4.95650 4.97814 5.14747 5.17288 5.17794 5.23430 5.27317 5.31296 5.32330 5.37601 5.40791 5.53452 5.58236 5.68818 5.74184 5.75505 5.76775 5.79290 5.87411 5.89961 6.02437 6.13531 6.17252 6.45768 6.71427 7.07710 7.10555 7.52897 7.56181 7.94208 8.12294 8.57381 8.92782 9.39998 9.80256 10.79829 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018773 B = 0.001909 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.122272 B =14660.312745 C =15392.324240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 C -0.177 4.177 4 O -0.358 6.358 5 C 0.042 3.958 6 C 0.517 3.483 7 O -0.511 6.511 8 N -0.608 5.608 9 C 0.106 3.894 10 C -0.125 4.125 11 C 0.088 3.912 12 H 0.044 0.956 13 N -0.664 5.664 14 C 0.049 3.951 15 C 0.449 3.551 16 O -0.564 6.564 17 N -0.591 5.591 18 C -0.306 4.306 19 H 0.120 0.880 20 C 0.041 3.959 21 N -0.881 5.881 22 Si 0.880 3.120 23 H -0.271 1.271 24 H -0.277 1.277 25 H -0.270 1.270 26 C -0.133 4.133 27 C 0.150 3.850 28 H 0.072 0.928 29 C -0.137 4.137 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.066 0.934 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.353 0.647 44 H 0.086 0.914 45 H 0.044 0.956 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.076 0.924 49 H 0.080 0.920 50 H 0.073 0.927 51 H 0.070 0.930 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.872 -0.601 -9.729 30.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.021 3.979 3 C -0.235 4.235 4 O -0.276 6.276 5 C -0.038 4.038 6 C 0.304 3.696 7 O -0.386 6.386 8 N -0.344 5.344 9 C -0.017 4.017 10 C -0.164 4.164 11 C -0.022 4.022 12 H 0.062 0.938 13 N -0.297 5.297 14 C -0.084 4.084 15 C 0.235 3.765 16 O -0.446 6.446 17 N -0.230 5.230 18 C -0.434 4.434 19 H 0.137 0.863 20 C -0.162 4.162 21 N -0.521 5.521 22 Si 0.707 3.293 23 H -0.196 1.196 24 H -0.202 1.202 25 H -0.196 1.196 26 C -0.172 4.172 27 C 0.047 3.953 28 H 0.090 0.910 29 C -0.194 4.194 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.097 0.903 43 H 0.173 0.827 44 H 0.104 0.896 45 H 0.062 0.938 46 H 0.203 0.797 47 H 0.084 0.916 48 H 0.095 0.905 49 H 0.098 0.902 50 H 0.092 0.908 51 H 0.089 0.911 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -29.054 0.541 -8.762 30.351 hybrid contribution 0.543 -1.878 -1.309 2.353 sum -28.511 -1.336 -10.071 30.267 Atomic orbital electron populations 1.21851 0.93251 1.02857 1.02686 1.22177 0.95346 0.92559 0.87776 1.22320 1.01633 0.96634 1.02865 1.88059 1.34580 1.69685 1.35309 1.22343 0.88173 0.97094 0.96171 1.20176 0.81013 0.78844 0.89577 1.90792 1.52624 1.59002 1.36188 1.48113 1.18891 1.50709 1.16721 1.21850 0.89706 1.02160 0.88030 1.21957 0.94745 1.01185 0.98510 1.21479 0.89029 0.96681 0.94998 0.93823 1.60074 0.99646 1.61728 1.08282 1.21756 0.91565 0.96272 0.98833 1.19719 0.84806 0.85621 0.86385 1.90573 1.86565 1.37162 1.30259 1.42204 1.06302 1.42673 1.31827 1.19436 0.80123 1.26721 1.17153 0.86287 1.25046 0.94965 0.98019 0.98155 1.69623 0.97323 1.43874 1.41254 0.86665 0.78324 0.81324 0.83009 1.19606 1.20183 1.19563 1.22217 0.93504 1.03623 0.97863 1.21278 0.94757 0.94675 0.84586 0.90991 1.22217 0.97930 1.03495 0.95755 0.91564 0.91111 0.91930 0.92097 0.92399 0.91463 0.91517 0.90386 0.90490 0.90994 0.89796 0.90384 0.90322 0.82659 0.89578 0.93794 0.79730 0.91603 0.90499 0.90172 0.90801 0.91092 0.93648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.56 37.16 0.36 -0.54 16 2 C 0.08 0.54 3.34 -26.73 -0.09 0.45 16 3 C -0.18 -1.10 9.53 37.16 0.35 -0.74 16 4 O -0.36 -3.64 9.52 -55.14 -0.52 -4.17 16 5 C 0.04 0.34 4.63 36.01 0.17 0.51 16 6 C 0.52 5.59 7.68 -10.99 -0.08 5.50 16 7 O -0.51 -7.32 11.90 -14.36 -0.17 -7.49 16 8 N -0.61 -5.57 2.97 -165.22 -0.49 -6.06 16 9 C 0.11 0.73 6.33 -3.71 -0.02 0.71 16 10 C -0.13 -1.15 5.59 -26.61 -0.15 -1.30 16 11 C 0.09 0.94 2.46 -67.67 -0.17 0.77 16 12 H 0.04 0.43 7.80 -51.93 -0.40 0.03 16 13 N -0.66 -9.66 5.93 -107.94 -0.64 -10.30 16 14 C 0.05 0.76 5.97 -4.97 -0.03 0.73 16 15 C 0.45 9.96 7.82 -10.98 -0.09 9.88 16 16 O -0.56 -14.98 15.78 5.55 0.09 -14.89 16 17 N -0.59 -13.81 5.09 -10.96 -0.06 -13.87 16 18 C -0.31 -8.57 10.16 -14.93 -0.15 -8.73 16 19 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 20 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 21 N -0.88 -25.55 13.96 55.50 0.77 -24.78 16 22 Si 0.88 19.04 27.73 -169.99 -4.71 14.33 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 24 H -0.28 -6.02 7.11 56.52 0.40 -5.61 16 25 H -0.27 -5.29 6.52 56.52 0.37 -4.92 16 26 C -0.13 -1.34 4.65 -26.61 -0.12 -1.47 16 27 C 0.15 1.43 3.49 -67.60 -0.24 1.19 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 C -0.14 -1.47 7.59 37.16 0.28 -1.19 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.32 7.79 -51.93 -0.40 -0.09 16 34 H 0.06 0.36 7.87 -51.93 -0.41 -0.05 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.50 7.21 -51.93 -0.37 0.13 16 38 H 0.08 0.44 8.05 -51.93 -0.42 0.02 16 39 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.08 0.41 5.96 -51.93 -0.31 0.10 16 41 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 42 H 0.08 0.70 7.42 -51.93 -0.39 0.32 16 43 H 0.35 5.43 8.03 -39.29 -0.32 5.12 16 44 H 0.09 1.18 7.41 -51.93 -0.38 0.80 16 45 H 0.04 0.60 8.05 -51.93 -0.42 0.18 16 46 H 0.37 7.54 5.77 -40.82 -0.24 7.30 16 47 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 48 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 49 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 50 H 0.07 0.95 6.73 -51.93 -0.35 0.60 16 51 H 0.07 0.85 6.77 -51.93 -0.35 0.50 16 52 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 407.99 15.07 6.15 6.15 Total: -1.00 -34.93 407.99 -8.63 -43.56 By element: Atomic # 1 Polarization: 19.69 SS G_CDS: -8.96 Total: 10.73 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.08 Total: 6.79 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: -0.41 Total: -55.00 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -0.61 Total: -26.55 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -4.71 Total: 14.33 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.93 -8.63 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754590960.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.186 kcal (2) G-P(sol) polarization free energy of solvation -34.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.557 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds