Wall clock time and date at job start Wed Apr 1 2020 00:33:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47243 * 2 1 4 4 O 1.42906 * 109.47267 * 119.99997 * 2 1 3 5 5 C 1.42895 * 114.00158 * 149.99882 * 4 2 1 6 6 C 1.50699 * 109.47398 * 180.02562 * 5 4 2 7 7 O 1.21289 * 119.99852 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00539 * 180.02562 * 6 5 4 9 9 C 1.46929 * 120.62558 * 5.04138 * 8 6 5 10 10 C 1.53192 * 108.77243 * 126.41657 * 9 8 6 11 11 C 1.53048 * 109.31412 * 54.63503 * 10 9 8 12 12 H 1.09006 * 109.44625 * 58.64627 * 11 10 9 13 13 N 1.46894 * 109.45999 * 178.61519 * 11 10 9 14 14 C 1.46904 * 110.99838 * 275.06552 * 13 11 10 15 15 C 1.50707 * 109.47048 * 180.02562 * 14 13 11 16 16 O 1.21294 * 119.99994 * 359.97438 * 15 14 13 17 17 N 1.34775 * 119.99889 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99756 * 179.97438 * 17 15 14 19 19 H 1.07996 * 120.00516 * 359.97438 * 18 17 15 20 20 C 1.38957 * 119.99644 * 180.27449 * 18 17 15 21 21 N 1.31411 * 119.99852 * 179.72540 * 20 18 17 22 22 Si 1.86793 * 120.00013 * 359.72144 * 20 18 17 23 23 H 1.48501 * 109.47218 * 90.00214 * 22 20 18 24 24 H 1.48505 * 109.46998 * 209.99853 * 22 20 18 25 25 H 1.48495 * 109.47748 * 330.00237 * 22 20 18 26 26 C 1.53039 * 109.53438 * 298.63611 * 11 10 9 27 27 C 1.46922 * 120.63198 * 185.07043 * 8 6 5 28 28 H 1.09004 * 109.70607 * 113.72854 * 27 8 6 29 29 C 1.52997 * 109.58816 * 353.36912 * 27 8 6 30 30 H 1.09003 * 109.46985 * 299.99729 * 1 2 3 31 31 H 1.08998 * 109.47311 * 59.99870 * 1 2 3 32 32 H 1.09002 * 109.47044 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47103 * 239.99737 * 2 1 3 34 34 H 1.09004 * 109.47099 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.47073 * 300.00275 * 3 2 1 36 36 H 1.09003 * 109.46909 * 60.00224 * 3 2 1 37 37 H 1.09005 * 109.47401 * 59.99878 * 5 4 2 38 38 H 1.08998 * 109.47349 * 300.00202 * 5 4 2 39 39 H 1.08997 * 109.58819 * 246.20103 * 9 8 6 40 40 H 1.09001 * 109.58916 * 6.62998 * 9 8 6 41 41 H 1.09000 * 109.50113 * 294.68323 * 10 9 8 42 42 H 1.08997 * 109.49870 * 174.58480 * 10 9 8 43 43 H 1.00907 * 111.00177 * 151.11730 * 13 11 10 44 44 H 1.09000 * 109.46838 * 60.00320 * 14 13 11 45 45 H 1.09001 * 109.46995 * 300.00024 * 14 13 11 46 46 H 0.96998 * 119.99967 * 359.97438 * 17 15 14 47 47 H 0.97000 * 119.99896 * 180.02562 * 21 20 18 48 48 H 1.09004 * 109.49442 * 181.31535 * 26 11 10 49 49 H 1.08999 * 109.50267 * 301.40819 * 26 11 10 50 50 H 1.08994 * 109.47275 * 304.33263 * 29 27 8 51 51 H 1.08999 * 109.46913 * 64.33257 * 29 27 8 52 52 H 1.09002 * 109.47378 * 184.33341 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 3.2659 -1.3245 0.9887 6 6 3.6693 -1.9989 2.2746 7 8 2.9492 -1.9286 3.2480 8 7 4.8307 -2.6792 2.3433 9 6 5.7655 -2.6808 1.2098 10 6 7.1454 -2.2400 1.7081 11 6 7.5713 -3.1337 2.8753 12 1 7.5947 -4.1729 2.5469 13 7 8.9086 -2.7352 3.3342 14 6 9.9551 -3.3857 2.5345 15 6 11.3100 -2.9542 3.0338 16 8 11.3954 -2.1805 3.9640 17 7 12.4268 -3.4273 2.4461 18 6 13.6593 -3.0343 2.9000 19 1 13.7354 -2.3454 3.7282 20 6 14.8107 -3.5176 2.2903 21 7 15.9920 -3.1368 2.7219 22 14 14.6792 -4.7087 0.8574 23 1 14.6234 -3.9468 -0.4160 24 1 15.8642 -5.6036 0.8473 25 1 13.4455 -5.5225 1.0016 26 6 6.5722 -2.9847 4.0250 27 6 5.1858 -3.4338 3.5529 28 1 5.2039 -4.5004 3.3286 29 6 4.1560 -3.1580 4.6503 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 0.0005 35 1 1.6766 1.9563 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 4.0200 -0.5874 0.7125 38 1 3.1809 -2.0707 0.1987 39 1 5.8316 -3.6853 0.7920 40 1 5.4144 -1.9873 0.4456 41 1 7.0977 -1.2036 2.0421 42 1 7.8700 -2.3289 0.8987 43 1 9.0280 -2.9339 4.3163 44 1 9.8445 -3.0986 1.4888 45 1 9.8623 -4.4679 2.6260 46 1 12.3585 -4.0457 1.7020 47 1 16.7958 -3.4738 2.2961 48 1 6.8888 -3.6036 4.8646 49 1 6.5298 -1.9412 4.3372 50 1 4.0895 -2.0841 4.8245 51 1 3.1825 -3.5364 4.3385 52 1 4.4623 -3.6569 5.5698 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754590960.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:41 Heat of formation + Delta-G solvation = -126.304265 kcal Electronic energy + Delta-G solvation = -30203.917681 eV Core-core repulsion = 26010.052548 eV Total energy + Delta-G solvation = -4193.865134 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.64711 -40.32674 -39.41691 -38.53437 -36.36829 -35.79325 -34.33744 -33.74548 -33.38600 -32.27356 -29.44847 -28.38377 -27.93817 -27.71734 -25.70426 -24.63266 -23.09101 -22.21790 -21.55980 -21.27915 -20.35512 -20.00745 -18.09835 -17.81236 -17.76593 -17.24445 -17.00976 -16.61242 -16.50968 -16.10580 -15.76357 -15.68366 -15.54457 -15.10122 -14.87797 -14.75192 -14.54300 -14.25535 -14.12621 -13.86409 -13.72161 -13.57689 -13.36159 -13.33226 -13.22167 -13.04006 -12.92606 -12.79815 -12.67552 -12.56954 -12.40289 -12.33348 -12.05188 -11.96679 -11.74770 -11.62222 -11.49806 -11.42746 -10.63013 -10.42054 -10.23919 -10.06359 -9.62358 -9.30529 -8.40308 -6.01595 1.31245 1.37418 1.46358 1.56576 1.71331 1.97495 2.24569 2.71459 2.84758 3.16077 3.34632 3.52754 3.76225 3.80360 3.98976 4.03200 4.09240 4.14415 4.17088 4.20122 4.27158 4.28275 4.31476 4.45111 4.47688 4.49731 4.54454 4.58806 4.72352 4.74665 4.77545 4.83192 4.89545 4.90873 4.94971 4.99708 5.04484 5.21308 5.29546 5.33080 5.34628 5.39607 5.54303 5.64941 5.92825 6.11071 6.17582 6.38833 6.42768 6.61015 6.89397 7.19418 7.41115 7.98531 8.77452 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018773 B = 0.001909 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.122272 B =14660.312745 C =15392.324240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.073 3.927 3 C -0.176 4.176 4 O -0.393 6.393 5 C 0.043 3.957 6 C 0.507 3.493 7 O -0.558 6.558 8 N -0.606 5.606 9 C 0.107 3.893 10 C -0.124 4.124 11 C 0.091 3.909 12 H 0.068 0.932 13 N -0.685 5.685 14 C 0.064 3.936 15 C 0.447 3.553 16 O -0.617 6.617 17 N -0.590 5.590 18 C -0.330 4.330 19 H 0.052 0.948 20 C -0.017 4.017 21 N -0.936 5.936 22 Si 0.967 3.033 23 H -0.256 1.256 24 H -0.277 1.277 25 H -0.228 1.228 26 C -0.127 4.127 27 C 0.152 3.848 28 H 0.094 0.906 29 C -0.127 4.127 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.058 0.942 33 H 0.085 0.915 34 H 0.057 0.943 35 H 0.085 0.915 36 H 0.048 0.952 37 H 0.096 0.904 38 H 0.109 0.891 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.054 0.946 42 H 0.090 0.910 43 H 0.344 0.656 44 H 0.118 0.882 45 H 0.078 0.922 46 H 0.390 0.610 47 H 0.279 0.721 48 H 0.081 0.919 49 H 0.054 0.946 50 H 0.045 0.955 51 H 0.056 0.944 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.424 -3.245 -13.992 33.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 C -0.233 4.233 4 O -0.313 6.313 5 C -0.036 4.036 6 C 0.296 3.704 7 O -0.437 6.437 8 N -0.341 5.341 9 C -0.015 4.015 10 C -0.162 4.162 11 C -0.019 4.019 12 H 0.086 0.914 13 N -0.318 5.318 14 C -0.068 4.068 15 C 0.235 3.765 16 O -0.502 6.502 17 N -0.232 5.232 18 C -0.460 4.460 19 H 0.071 0.929 20 C -0.215 4.215 21 N -0.576 5.576 22 Si 0.787 3.213 23 H -0.180 1.180 24 H -0.202 1.202 25 H -0.151 1.151 26 C -0.165 4.165 27 C 0.049 3.951 28 H 0.112 0.888 29 C -0.185 4.185 30 H 0.068 0.932 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.104 0.896 36 H 0.067 0.933 37 H 0.114 0.886 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.127 0.873 41 H 0.073 0.927 42 H 0.109 0.891 43 H 0.163 0.837 44 H 0.135 0.865 45 H 0.096 0.904 46 H 0.226 0.774 47 H 0.088 0.912 48 H 0.099 0.901 49 H 0.073 0.927 50 H 0.064 0.936 51 H 0.075 0.925 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -30.626 -2.109 -13.058 33.360 hybrid contribution 1.016 -0.929 0.156 1.386 sum -29.610 -3.038 -12.902 32.441 Atomic orbital electron populations 1.21882 0.93091 1.02699 1.02975 1.22393 0.95593 0.92740 0.87658 1.22318 1.01636 0.96457 1.02900 1.88030 1.35566 1.70315 1.37340 1.22460 0.87991 0.98028 0.95125 1.20803 0.80969 0.78526 0.90133 1.90779 1.54174 1.60737 1.37987 1.48217 1.18827 1.49885 1.17161 1.22059 0.87605 1.04377 0.87430 1.21950 0.96530 0.99595 0.98164 1.21588 0.86686 0.98231 0.95351 0.91421 1.60107 1.01270 1.62636 1.07788 1.21685 0.87125 0.98065 0.99898 1.21094 0.86911 0.83671 0.84863 1.90554 1.87779 1.39254 1.32578 1.42016 1.04998 1.43480 1.32696 1.19002 0.83105 1.27171 1.16681 0.92948 1.26167 0.93608 1.00017 1.01752 1.69815 0.98631 1.45709 1.43470 0.85334 0.80009 0.78261 0.77699 1.18023 1.20219 1.15150 1.22128 0.94006 1.02195 0.98205 1.21260 0.93508 0.95833 0.84519 0.88807 1.22046 0.97883 1.01576 0.96958 0.93160 0.88934 0.92293 0.89720 0.92347 0.89607 0.93296 0.88619 0.87372 0.88319 0.87308 0.92711 0.89147 0.83728 0.86462 0.90392 0.77380 0.91176 0.90056 0.92697 0.93598 0.92464 0.92670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.56 71.98 0.69 -0.95 16 2 C 0.07 0.87 3.34 30.59 0.10 0.98 16 3 C -0.18 -1.93 9.53 71.98 0.69 -1.24 16 4 O -0.39 -7.64 9.52 -129.94 -1.24 -8.87 16 5 C 0.04 0.60 4.63 71.24 0.33 0.93 16 6 C 0.51 10.41 7.68 87.66 0.67 11.09 16 7 O -0.56 -16.44 11.90 15.98 0.19 -16.25 16 8 N -0.61 -9.69 2.97 -795.02 -2.36 -12.06 16 9 C 0.11 1.01 6.33 86.36 0.55 1.56 16 10 C -0.12 -1.85 5.59 30.67 0.17 -1.68 16 11 C 0.09 1.64 2.46 44.95 0.11 1.75 16 12 H 0.07 0.97 7.80 -2.38 -0.02 0.95 16 13 N -0.69 -18.61 5.93 -495.41 -2.94 -21.55 16 14 C 0.06 1.78 5.97 85.56 0.51 2.29 16 15 C 0.45 19.52 7.82 87.66 0.69 20.21 16 16 O -0.62 -33.97 15.78 -3.07 -0.05 -34.02 16 17 N -0.59 -27.02 5.09 -306.98 -1.56 -28.58 16 18 C -0.33 -19.18 10.16 84.04 0.85 -18.32 16 19 H 0.05 3.66 7.39 -2.91 -0.02 3.64 16 20 C -0.02 -0.93 5.50 84.93 0.47 -0.47 16 21 N -0.94 -56.10 13.96 21.67 0.30 -55.80 16 22 Si 0.97 37.65 27.73 68.60 1.90 39.55 16 23 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 24 H -0.28 -10.79 7.11 99.48 0.71 -10.08 16 25 H -0.23 -7.30 6.52 99.48 0.65 -6.65 16 26 C -0.13 -2.39 4.65 30.67 0.14 -2.24 16 27 C 0.15 2.63 3.49 44.98 0.16 2.78 16 28 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 29 C -0.13 -2.78 7.59 71.98 0.55 -2.24 16 30 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 33 H 0.08 0.59 7.79 -2.39 -0.02 0.58 16 34 H 0.06 0.62 7.87 -2.38 -0.02 0.60 16 35 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.10 0.95 7.21 -2.38 -0.02 0.93 16 38 H 0.11 0.79 8.05 -2.39 -0.02 0.77 16 39 H 0.10 0.52 8.14 -2.39 -0.02 0.50 16 40 H 0.11 0.53 5.96 -2.39 -0.01 0.51 16 41 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.09 1.18 7.42 -2.39 -0.02 1.16 16 43 H 0.34 10.37 8.03 -89.69 -0.72 9.65 16 44 H 0.12 2.59 7.41 -2.39 -0.02 2.57 16 45 H 0.08 1.71 8.05 -2.39 -0.02 1.69 16 46 H 0.39 14.48 5.77 -92.71 -0.53 13.95 16 47 H 0.28 15.25 8.31 -92.71 -0.77 14.48 16 48 H 0.08 1.44 8.10 -2.38 -0.02 1.43 16 49 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 50 H 0.04 1.25 6.73 -2.39 -0.02 1.24 16 51 H 0.06 1.41 6.77 -2.39 -0.02 1.39 16 52 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -85.25 407.99 0.52 -84.73 By element: Atomic # 1 Polarization: 38.79 SS G_CDS: -0.39 Total: 38.40 kcal Atomic # 6 Polarization: 7.78 SS G_CDS: 6.67 Total: 14.45 kcal Atomic # 7 Polarization: -111.42 SS G_CDS: -6.56 Total: -117.98 kcal Atomic # 8 Polarization: -58.04 SS G_CDS: -1.10 Total: -59.14 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 1.90 Total: 39.55 kcal Total: -85.25 0.52 -84.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754590960.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.576 kcal (2) G-P(sol) polarization free energy of solvation -85.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds