Wall clock time and date at job start Wed Apr 1 2020 00:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 O 1.42896 * 109.47109 * 119.99326 * 2 1 3 5 5 C 1.42903 * 114.00236 * 149.99889 * 4 2 1 6 6 C 1.50698 * 109.47457 * 180.02562 * 5 4 2 7 7 O 1.21280 * 119.99912 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99915 * 180.02562 * 6 5 4 9 9 C 1.46927 * 120.63332 * 359.97438 * 8 6 5 10 10 C 1.53178 * 108.77792 * 233.63135 * 9 8 6 11 11 C 1.53042 * 109.34054 * 305.38239 * 10 9 8 12 12 H 1.08998 * 109.42702 * 301.30805 * 11 10 9 13 13 N 1.46901 * 109.48639 * 181.35656 * 11 10 9 14 14 C 1.46899 * 111.00139 * 84.91155 * 13 11 10 15 15 C 1.50705 * 109.46756 * 179.97438 * 14 13 11 16 16 O 1.21288 * 120.00162 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99926 * 179.97438 * 15 14 13 18 18 C 1.37090 * 120.00052 * 179.97438 * 17 15 14 19 19 H 1.08004 * 120.00481 * 0.02562 * 18 17 15 20 20 C 1.38957 * 119.99986 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99912 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 119.99881 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47145 * 90.00211 * 22 20 18 24 24 H 1.48496 * 109.46874 * 210.00173 * 22 20 18 25 25 H 1.48504 * 109.47245 * 329.99930 * 22 20 18 26 26 C 1.53036 * 109.54058 * 61.31389 * 11 10 9 27 27 C 1.46928 * 120.63052 * 179.97438 * 8 6 5 28 28 H 1.09000 * 109.58414 * 6.58067 * 27 8 6 29 29 C 1.52997 * 109.58683 * 246.15855 * 27 8 6 30 30 H 1.09002 * 109.47284 * 300.00492 * 1 2 3 31 31 H 1.09003 * 109.47078 * 60.00271 * 1 2 3 32 32 H 1.08999 * 109.47400 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47715 * 239.99825 * 2 1 3 34 34 H 1.08993 * 109.47393 * 59.99789 * 3 2 1 35 35 H 1.09004 * 109.46932 * 180.02562 * 3 2 1 36 36 H 1.09003 * 109.46699 * 299.99320 * 3 2 1 37 37 H 1.09010 * 109.46895 * 60.00031 * 5 4 2 38 38 H 1.09002 * 109.47403 * 300.01041 * 5 4 2 39 39 H 1.08999 * 109.58621 * 353.42243 * 9 8 6 40 40 H 1.09003 * 109.58297 * 113.69808 * 9 8 6 41 41 H 1.09003 * 109.50079 * 65.31259 * 10 9 8 42 42 H 1.09000 * 109.50150 * 185.38047 * 10 9 8 43 43 H 1.00900 * 110.99546 * 208.86827 * 13 11 10 44 44 H 1.09000 * 109.47147 * 299.99951 * 14 13 11 45 45 H 1.08997 * 109.46951 * 60.00315 * 14 13 11 46 46 H 0.97003 * 119.99339 * 0.02562 * 17 15 14 47 47 H 0.96999 * 119.99676 * 180.02562 * 21 20 18 48 48 H 1.09002 * 109.49886 * 178.71774 * 26 11 10 49 49 H 1.09000 * 109.49395 * 58.65251 * 26 11 10 50 50 H 1.09005 * 109.47415 * 300.70956 * 29 27 8 51 51 H 1.09006 * 109.47222 * 60.70745 * 29 27 8 52 52 H 1.08999 * 109.47484 * 180.70842 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0062 -0.6735 1.1668 5 6 3.2659 -1.3244 0.9888 6 6 3.6692 -1.9986 2.2748 7 8 2.9487 -1.9290 3.2478 8 7 4.8307 -2.6789 2.3435 9 6 5.7138 -2.7726 1.1730 10 6 6.0152 -4.2494 0.8997 11 6 6.5809 -4.8943 2.1671 12 1 7.4860 -4.3672 2.4691 13 7 6.9015 -6.3026 1.8991 14 6 8.2399 -6.4347 1.3082 15 6 8.5329 -7.8900 1.0485 16 8 7.7082 -8.7341 1.3287 17 7 9.7114 -8.2536 0.5050 18 6 9.9782 -9.5775 0.2692 19 1 9.2438 -10.3291 0.5187 20 6 11.1930 -9.9522 -0.2917 21 7 12.0863 -9.0377 -0.5957 22 14 11.5562 -11.7561 -0.6135 23 1 11.0975 -12.1174 -1.9788 24 1 13.0178 -11.9940 -0.5032 25 1 10.8421 -12.5908 0.3858 26 6 5.5442 -4.8119 3.2898 27 6 5.2377 -3.3410 3.5904 28 1 4.4292 -3.2775 4.3186 29 6 6.4889 -2.6596 4.1481 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6766 1.9564 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 4.0200 -0.5873 0.7125 38 1 3.1809 -2.0706 0.1988 39 1 5.2195 -2.3340 0.3063 40 1 6.6429 -2.2387 1.3727 41 1 5.0969 -4.7607 0.6108 42 1 6.7448 -4.3287 0.0938 43 1 6.8200 -6.8578 2.7377 44 1 8.2784 -5.8827 0.3690 45 1 8.9825 -6.0322 1.9970 46 1 10.3711 -7.5785 0.2813 47 1 12.9342 -9.2993 -0.9875 48 1 5.9390 -5.2916 4.1855 49 1 4.6303 -5.3180 2.9788 50 1 7.2930 -2.7197 3.4146 51 1 6.2687 -1.6134 4.3609 52 1 6.7966 -3.1601 5.0662 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754590962.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:49 Heat of formation + Delta-G solvation = -146.287452 kcal Electronic energy + Delta-G solvation = -30116.591215 eV Core-core repulsion = 25921.859545 eV Total energy + Delta-G solvation = -4194.731670 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.55664 -40.19986 -39.49985 -38.58295 -36.42055 -35.77032 -34.08929 -33.39691 -33.25364 -32.16498 -29.42341 -28.58272 -27.98691 -27.72850 -25.82603 -24.66962 -23.16071 -22.26675 -21.78157 -21.07680 -19.92143 -19.42495 -18.52324 -17.80532 -17.72758 -17.16087 -16.96321 -16.57151 -16.44944 -16.22734 -15.68005 -15.65406 -15.53885 -15.21902 -14.95654 -14.63005 -14.54853 -14.29915 -13.90594 -13.82792 -13.67783 -13.50945 -13.45078 -13.32559 -13.06630 -12.98124 -12.89225 -12.83107 -12.77594 -12.41610 -12.37365 -12.36236 -12.12820 -12.10475 -11.75977 -11.63866 -11.50074 -11.24426 -10.76065 -10.64309 -10.31966 -10.00286 -9.74046 -9.29332 -8.46093 -5.94376 1.38396 1.42509 1.51456 1.54744 1.67588 2.07068 2.29711 2.81772 2.91147 3.21550 3.44237 3.52332 3.75995 3.79441 3.99417 4.01416 4.08392 4.13937 4.18557 4.21752 4.26960 4.30579 4.32253 4.42202 4.48044 4.53076 4.54402 4.61454 4.69101 4.70024 4.76031 4.82618 4.90953 4.92054 4.94500 4.98263 5.04411 5.10170 5.24662 5.29265 5.33691 5.41463 5.43460 5.53506 5.92860 6.14476 6.16186 6.38227 6.41283 6.61674 7.11024 7.14029 7.57996 8.13807 8.71131 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020335 B = 0.001807 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.597627 B =15488.933705 C =16075.193903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.071 3.929 3 C -0.173 4.173 4 O -0.394 6.394 5 C 0.046 3.954 6 C 0.510 3.490 7 O -0.577 6.577 8 N -0.601 5.601 9 C 0.106 3.894 10 C -0.123 4.123 11 C 0.090 3.910 12 H 0.065 0.935 13 N -0.681 5.681 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.573 5.573 18 C -0.334 4.334 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.275 1.275 26 C -0.123 4.123 27 C 0.143 3.857 28 H 0.079 0.921 29 C -0.155 4.155 30 H 0.052 0.948 31 H 0.093 0.907 32 H 0.054 0.946 33 H 0.082 0.918 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.085 0.915 37 H 0.108 0.892 38 H 0.102 0.898 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.343 0.657 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.074 0.926 51 H 0.055 0.945 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.238 23.506 -0.201 26.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.014 3.986 3 C -0.230 4.230 4 O -0.314 6.314 5 C -0.033 4.033 6 C 0.299 3.701 7 O -0.456 6.456 8 N -0.335 5.335 9 C -0.016 4.016 10 C -0.162 4.162 11 C -0.019 4.019 12 H 0.083 0.917 13 N -0.313 5.313 14 C -0.064 4.064 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.559 5.559 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.161 4.161 27 C 0.039 3.961 28 H 0.098 0.902 29 C -0.213 4.213 30 H 0.071 0.929 31 H 0.112 0.888 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.129 0.871 40 H 0.113 0.887 41 H 0.077 0.923 42 H 0.105 0.895 43 H 0.162 0.838 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.100 0.900 49 H 0.076 0.924 50 H 0.092 0.908 51 H 0.074 0.926 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.392 22.961 -0.028 26.581 hybrid contribution 1.185 -0.767 0.449 1.481 sum -12.207 22.194 0.421 25.333 Atomic orbital electron populations 1.21893 0.93268 1.02535 1.03092 1.22417 0.95542 0.93094 0.87530 1.22296 1.01829 0.95917 1.02991 1.88034 1.35638 1.70331 1.37349 1.22416 0.88341 0.98049 0.94513 1.20875 0.80466 0.78549 0.90195 1.90688 1.53056 1.62069 1.39800 1.48254 1.20094 1.51668 1.13490 1.22045 0.95366 0.96641 0.87587 1.21930 1.01953 0.94592 0.97681 1.21605 0.97493 0.87661 0.95163 0.91724 1.60108 1.26784 1.09605 1.34824 1.21573 0.91015 0.91952 1.01891 1.20972 0.82294 0.92029 0.82308 1.90498 1.48398 1.54469 1.57855 1.41923 1.15584 1.08138 1.55365 1.19647 1.01723 0.84757 1.40271 0.90506 1.25998 0.94871 1.03989 0.96288 1.69661 1.08185 1.35052 1.43046 0.84957 0.77657 0.77235 0.78670 1.19696 1.19504 1.19945 1.22025 0.99504 0.95722 0.98885 1.21094 0.98022 0.90991 0.85981 0.90239 1.22107 0.96660 1.00607 1.01958 0.92931 0.88829 0.92729 0.89991 0.93056 0.91924 0.89625 0.87452 0.88014 0.87107 0.88710 0.92267 0.89529 0.83752 0.87482 0.91480 0.76891 0.91302 0.89962 0.92408 0.90761 0.92555 0.90485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.86 9.56 71.98 0.69 -1.18 16 2 C 0.07 0.92 3.34 30.59 0.10 1.02 16 3 C -0.17 -1.76 9.53 71.98 0.69 -1.07 16 4 O -0.39 -8.17 9.52 -129.94 -1.24 -9.41 16 5 C 0.05 0.70 4.57 71.24 0.33 1.03 16 6 C 0.51 11.56 7.78 87.66 0.68 12.24 16 7 O -0.58 -18.98 15.91 16.01 0.25 -18.73 16 8 N -0.60 -10.76 2.68 -794.99 -2.13 -12.90 16 9 C 0.11 1.23 5.92 86.36 0.51 1.74 16 10 C -0.12 -2.09 5.59 30.67 0.17 -1.92 16 11 C 0.09 1.82 2.25 44.94 0.10 1.92 16 12 H 0.06 1.13 6.17 -2.39 -0.01 1.11 16 13 N -0.68 -19.89 5.93 -495.44 -2.94 -22.83 16 14 C 0.07 2.14 5.97 85.56 0.51 2.65 16 15 C 0.44 20.14 7.82 87.66 0.69 20.83 16 16 O -0.63 -34.32 15.78 -3.05 -0.05 -34.37 16 17 N -0.57 -28.64 5.29 -306.97 -1.62 -30.26 16 18 C -0.33 -18.77 9.68 84.04 0.81 -17.96 16 19 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 20 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 21 N -0.92 -48.55 13.05 21.67 0.28 -48.27 16 22 Si 0.99 42.45 29.55 68.60 2.03 44.48 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 C -0.12 -2.49 4.84 30.68 0.15 -2.34 16 27 C 0.14 2.75 3.21 44.98 0.14 2.89 16 28 H 0.08 1.92 7.00 -2.39 -0.02 1.90 16 29 C -0.16 -2.31 9.02 71.98 0.65 -1.66 16 30 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.71 7.79 -2.39 -0.02 0.69 16 34 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.06 0.55 7.87 -2.38 -0.02 0.53 16 36 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.11 0.97 7.67 -2.38 -0.02 0.95 16 38 H 0.10 1.09 7.64 -2.39 -0.02 1.08 16 39 H 0.11 0.72 5.93 -2.39 -0.01 0.71 16 40 H 0.09 0.79 7.48 -2.39 -0.02 0.77 16 41 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.09 1.39 7.42 -2.39 -0.02 1.37 16 43 H 0.34 10.90 8.03 -89.69 -0.72 10.18 16 44 H 0.11 2.93 7.41 -2.39 -0.02 2.92 16 45 H 0.07 1.82 8.05 -2.39 -0.02 1.80 16 46 H 0.40 18.66 7.90 -92.71 -0.73 17.92 16 47 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 48 H 0.08 1.57 8.10 -2.39 -0.02 1.55 16 49 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 50 H 0.07 0.94 5.73 -2.38 -0.01 0.92 16 51 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 52 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 Total: -1.00 -77.20 412.55 0.75 -76.45 By element: Atomic # 1 Polarization: 38.30 SS G_CDS: -0.52 Total: 37.78 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: 6.69 Total: 18.06 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -6.41 Total: -114.26 kcal Atomic # 8 Polarization: -61.47 SS G_CDS: -1.03 Total: -62.50 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -77.20 0.75 -76.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754590962.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.837 kcal (2) G-P(sol) polarization free energy of solvation -77.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds