Wall clock time and date at job start Wed Apr 1 2020 00:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.46850 * 2 1 4 4 O 1.42902 * 109.47023 * 119.99944 * 2 1 3 5 5 C 1.42895 * 113.99889 * 90.00332 * 4 2 1 6 6 C 1.50707 * 109.46995 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00051 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99592 * 179.97438 * 6 5 4 9 9 C 1.46921 * 120.63553 * 359.97438 * 8 6 5 10 10 C 1.53190 * 108.77627 * 126.41322 * 9 8 6 11 11 C 1.53032 * 109.31358 * 54.63502 * 10 9 8 12 12 H 1.09000 * 109.45382 * 58.64592 * 11 10 9 13 13 N 1.46903 * 109.45947 * 178.61330 * 11 10 9 14 14 C 1.46896 * 110.99955 * 275.06836 * 13 11 10 15 15 C 1.50701 * 109.46946 * 180.02562 * 14 13 11 16 16 O 1.21293 * 120.00278 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00078 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99959 * 179.97438 * 17 15 14 19 19 H 1.07991 * 120.00408 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99816 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99922 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00126 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 299.99915 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00007 * 22 20 18 26 26 C 1.53045 * 109.53899 * 298.63245 * 11 10 9 27 27 C 1.46930 * 120.62333 * 180.02562 * 8 6 5 28 28 H 1.08998 * 109.58726 * 353.37424 * 27 8 6 29 29 C 1.52996 * 109.70186 * 113.73275 * 27 8 6 30 30 H 1.09007 * 109.46982 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47351 * 299.99483 * 1 2 3 32 32 H 1.08998 * 109.47318 * 60.00642 * 1 2 3 33 33 H 1.08997 * 109.46916 * 239.99939 * 2 1 3 34 34 H 1.09003 * 109.47423 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47419 * 299.99722 * 3 2 1 36 36 H 1.09005 * 109.47606 * 59.99999 * 3 2 1 37 37 H 1.08999 * 109.47228 * 59.99647 * 5 4 2 38 38 H 1.08996 * 109.47345 * 299.99581 * 5 4 2 39 39 H 1.09003 * 109.58488 * 246.20340 * 9 8 6 40 40 H 1.08998 * 109.58731 * 6.47843 * 9 8 6 41 41 H 1.08995 * 109.49470 * 294.67618 * 10 9 8 42 42 H 1.09000 * 109.49276 * 174.58674 * 10 9 8 43 43 H 1.00902 * 110.99560 * 151.11274 * 13 11 10 44 44 H 1.08994 * 109.47346 * 60.00149 * 14 13 11 45 45 H 1.09006 * 109.47133 * 299.99542 * 14 13 11 46 46 H 0.97000 * 119.99555 * 359.97438 * 17 15 14 47 47 H 0.96996 * 120.00340 * 359.97438 * 21 20 18 48 48 H 1.08992 * 109.49945 * 181.31689 * 26 11 10 49 49 H 1.09000 * 109.49716 * 301.41644 * 26 11 10 50 50 H 1.09001 * 109.47216 * 179.35655 * 29 27 8 51 51 H 1.09007 * 109.47297 * 299.35574 * 29 27 8 52 52 H 1.08995 * 109.47680 * 59.35591 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2002 -2.0781 0.9886 6 6 2.7015 -2.6832 2.2746 7 8 2.8753 -1.9809 3.2480 8 7 2.9558 -4.0050 2.3432 9 6 2.7486 -4.8690 1.1731 10 6 4.0399 -5.6463 0.8993 11 6 4.4587 -6.3946 2.1668 12 1 3.6594 -7.0710 2.4698 13 7 5.6786 -7.1677 1.8983 14 6 5.3551 -8.4734 1.3081 15 6 6.6285 -9.2363 1.0478 16 8 7.7000 -8.7408 1.3261 17 7 6.5766 -10.4688 0.5048 18 6 7.7350 -11.1625 0.2675 19 1 8.6891 -10.7214 0.5153 20 6 7.6816 -12.4334 -0.2918 21 7 6.5206 -12.9704 -0.5929 22 14 9.2600 -13.3784 -0.6159 23 1 8.9330 -14.6987 -1.2117 24 1 10.1138 -12.6085 -1.5557 25 1 9.9878 -13.5796 0.6628 26 6 4.7287 -5.3896 3.2890 27 6 3.4444 -4.6094 3.5901 28 1 3.6549 -3.8259 4.3181 29 6 2.3858 -5.5605 4.1518 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.9320 -2.2466 0.1986 38 1 1.2539 -2.5434 0.7125 39 1 1.9369 -5.5681 1.3743 40 1 2.4974 -4.2570 0.3069 41 1 4.8283 -4.9516 0.6097 42 1 3.8704 -6.3611 0.0941 43 1 6.2297 -7.2762 2.7365 44 1 4.8213 -8.3257 0.3694 45 1 4.7280 -9.0386 1.9977 46 1 5.7197 -10.8648 0.2819 47 1 5.7009 -12.4799 -0.4243 48 1 5.0494 -5.9216 4.1845 49 1 5.5106 -4.6972 2.9769 50 1 2.7566 -6.0154 5.0703 51 1 1.4733 -5.0036 4.3648 52 1 2.1731 -6.3402 3.4205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754590964.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:59 Heat of formation + Delta-G solvation = -120.889214 kcal Electronic energy + Delta-G solvation = -30157.131277 eV Core-core repulsion = 25963.500957 eV Total energy + Delta-G solvation = -4193.630319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.76824 -39.00954 -38.41029 -37.67575 -35.31985 -34.22033 -33.43876 -32.76183 -31.38684 -30.94503 -28.53078 -27.95130 -27.48733 -26.17141 -24.20128 -23.76488 -22.32453 -21.75499 -20.99149 -19.71866 -18.68150 -17.93031 -17.76528 -17.12610 -16.66507 -16.41587 -15.91251 -15.55888 -15.28818 -14.99451 -14.93969 -14.50522 -14.13855 -14.07241 -13.88126 -13.81843 -13.68598 -13.42291 -13.09765 -13.07257 -12.77105 -12.60338 -12.52514 -12.44236 -12.34352 -12.05984 -11.92419 -11.85321 -11.51883 -11.34110 -11.23767 -11.15718 -10.99226 -10.92294 -10.43369 -10.22190 -10.08199 -9.91138 -9.88787 -9.57002 -8.96679 -8.53986 -8.18199 -8.05503 -6.77737 -3.90970 2.32547 2.35617 3.29373 3.33569 3.40202 3.53764 3.81427 3.97077 4.15299 4.29797 4.41660 4.46164 4.54943 4.58969 4.68315 4.71827 4.74758 4.79494 4.84550 4.88484 5.05178 5.13931 5.15155 5.17316 5.18169 5.24319 5.28099 5.31968 5.35992 5.41777 5.42099 5.59306 5.66409 5.69469 5.74436 5.76114 5.79573 5.80818 5.85498 5.95706 5.99420 6.19051 6.25927 6.71725 7.08599 7.11096 7.54543 7.78540 7.90563 8.05769 8.57546 8.77461 9.45022 9.85200 10.65673 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020357 B = 0.001812 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.103160 B =15450.888154 C =16036.619775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.078 3.922 3 C -0.150 4.150 4 O -0.358 6.358 5 C 0.045 3.955 6 C 0.518 3.482 7 O -0.521 6.521 8 N -0.605 5.605 9 C 0.105 3.895 10 C -0.125 4.125 11 C 0.088 3.912 12 H 0.047 0.953 13 N -0.664 5.664 14 C 0.052 3.948 15 C 0.442 3.558 16 O -0.576 6.576 17 N -0.576 5.576 18 C -0.382 4.382 19 H 0.099 0.901 20 C -0.009 4.009 21 N -0.901 5.901 22 Si 1.091 2.909 23 H -0.279 1.279 24 H -0.284 1.284 25 H -0.284 1.284 26 C -0.130 4.130 27 C 0.142 3.858 28 H 0.102 0.898 29 C -0.163 4.163 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.352 0.648 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.375 0.625 47 H 0.261 0.739 48 H 0.077 0.923 49 H 0.078 0.922 50 H 0.069 0.931 51 H 0.058 0.942 52 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.949 20.683 1.577 26.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.277 6.277 5 C -0.035 4.035 6 C 0.305 3.695 7 O -0.396 6.396 8 N -0.341 5.341 9 C -0.019 4.019 10 C -0.163 4.163 11 C -0.022 4.022 12 H 0.065 0.935 13 N -0.297 5.297 14 C -0.081 4.081 15 C 0.228 3.772 16 O -0.459 6.459 17 N -0.214 5.214 18 C -0.512 4.512 19 H 0.117 0.883 20 C -0.212 4.212 21 N -0.540 5.540 22 Si 0.917 3.083 23 H -0.204 1.204 24 H -0.210 1.210 25 H -0.210 1.210 26 C -0.169 4.169 27 C 0.039 3.961 28 H 0.120 0.880 29 C -0.221 4.221 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.099 0.901 38 H 0.096 0.904 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.172 0.828 44 H 0.102 0.898 45 H 0.060 0.940 46 H 0.208 0.792 47 H 0.072 0.928 48 H 0.095 0.905 49 H 0.097 0.903 50 H 0.088 0.912 51 H 0.077 0.923 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.339 20.356 1.264 24.931 hybrid contribution -1.653 0.435 0.805 1.890 sum -15.992 20.792 2.068 26.312 Atomic orbital electron populations 1.22317 0.95805 1.02395 1.02838 1.22185 0.93788 0.94115 0.87839 1.21854 1.02048 0.94152 1.02636 1.88064 1.86596 1.17693 1.35317 1.22283 1.01061 0.84131 0.96018 1.20210 0.77878 0.81667 0.89707 1.90717 1.51231 1.59978 1.37709 1.48148 1.66268 1.06750 1.12951 1.21839 0.98452 0.93973 0.87595 1.21944 0.96576 0.99564 0.98258 1.21508 0.92049 0.94390 0.94294 0.93520 1.60071 1.18037 1.16684 1.34931 1.21711 0.96584 0.89774 1.00044 1.19744 0.90199 0.82816 0.84433 1.90534 1.30509 1.68706 1.56194 1.41938 1.08937 1.14674 1.55842 1.20534 0.87488 1.00660 1.42480 0.88332 1.26513 1.04870 0.94773 0.95023 1.70907 0.97735 1.39678 1.45699 0.83132 0.72433 0.75812 0.76909 1.20410 1.20982 1.21020 1.22122 0.97439 0.98604 0.98715 1.21160 0.93127 0.95866 0.85922 0.87966 1.22167 0.99020 0.99528 1.01392 0.92527 0.91578 0.91434 0.91965 0.91800 0.91089 0.91598 0.90140 0.90430 0.90948 0.89827 0.90446 0.90383 0.82812 0.89764 0.94004 0.79184 0.92805 0.90473 0.90286 0.91163 0.92291 0.91957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.05 9.53 37.16 0.35 -0.70 16 2 C 0.08 0.56 3.34 -26.73 -0.09 0.48 16 3 C -0.15 -0.97 9.56 37.15 0.36 -0.62 16 4 O -0.36 -3.82 9.52 -55.14 -0.52 -4.35 16 5 C 0.04 0.39 4.57 36.01 0.16 0.55 16 6 C 0.52 5.99 7.78 -10.98 -0.09 5.90 16 7 O -0.52 -8.24 15.91 -14.35 -0.23 -8.46 16 8 N -0.61 -5.83 2.68 -165.19 -0.44 -6.27 16 9 C 0.10 0.78 5.93 -3.71 -0.02 0.75 16 10 C -0.12 -1.21 5.59 -26.62 -0.15 -1.36 16 11 C 0.09 0.97 2.25 -67.67 -0.15 0.82 16 12 H 0.05 0.49 6.17 -51.93 -0.32 0.17 16 13 N -0.66 -10.06 5.93 -107.95 -0.64 -10.70 16 14 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 15 C 0.44 10.24 7.82 -10.98 -0.09 10.15 16 16 O -0.58 -15.60 15.78 5.55 0.09 -15.51 16 17 N -0.58 -14.26 5.28 -10.97 -0.06 -14.32 16 18 C -0.38 -10.68 9.68 -14.93 -0.14 -10.82 16 19 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 20 C -0.01 -0.25 5.50 -17.47 -0.10 -0.35 16 21 N -0.90 -24.96 13.68 55.50 0.76 -24.20 16 22 Si 1.09 24.09 29.92 -169.99 -5.09 19.00 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 C -0.13 -1.35 4.84 -26.58 -0.13 -1.48 16 27 C 0.14 1.41 3.20 -67.57 -0.22 1.19 16 28 H 0.10 1.17 7.00 -51.93 -0.36 0.81 16 29 C -0.16 -1.35 9.03 37.16 0.34 -1.02 16 30 H 0.06 0.32 7.87 -51.92 -0.41 -0.09 16 31 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.35 7.79 -51.93 -0.40 -0.05 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.54 7.64 -51.93 -0.40 0.15 16 38 H 0.08 0.48 7.67 -51.93 -0.40 0.08 16 39 H 0.07 0.46 7.49 -51.93 -0.39 0.08 16 40 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.75 7.42 -51.93 -0.39 0.37 16 43 H 0.35 5.62 8.03 -39.29 -0.32 5.30 16 44 H 0.08 1.27 7.41 -51.93 -0.38 0.88 16 45 H 0.04 0.62 8.06 -51.93 -0.42 0.21 16 46 H 0.38 8.53 6.73 -40.82 -0.27 8.26 16 47 H 0.26 6.92 6.78 -40.82 -0.28 6.64 16 48 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 49 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 52 H 0.06 0.49 5.74 -51.93 -0.30 0.19 16 LS Contribution 410.87 15.07 6.19 6.19 Total: -1.00 -35.61 410.87 -8.67 -44.28 By element: Atomic # 1 Polarization: 18.74 SS G_CDS: -8.74 Total: 10.00 kcal Atomic # 6 Polarization: 4.32 SS G_CDS: 0.01 Total: 4.34 kcal Atomic # 7 Polarization: -55.11 SS G_CDS: -0.38 Total: -55.49 kcal Atomic # 8 Polarization: -27.66 SS G_CDS: -0.67 Total: -28.33 kcal Atomic # 14 Polarization: 24.09 SS G_CDS: -5.09 Total: 19.00 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -35.61 -8.67 -44.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754590964.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.605 kcal (2) G-P(sol) polarization free energy of solvation -35.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds