Wall clock time and date at job start Wed Apr 1 2020 00:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52992 * 109.46850 * 2 1 4 4 O 1.42902 * 109.47023 * 119.99944 * 2 1 3 5 5 C 1.42895 * 113.99889 * 90.00332 * 4 2 1 6 6 C 1.50707 * 109.46995 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00051 * 0.02562 * 6 5 4 8 8 N 1.34779 * 119.99592 * 179.97438 * 6 5 4 9 9 C 1.46921 * 120.63553 * 359.97438 * 8 6 5 10 10 C 1.53190 * 108.77627 * 126.41322 * 9 8 6 11 11 C 1.53032 * 109.31358 * 54.63502 * 10 9 8 12 12 H 1.09000 * 109.45382 * 58.64592 * 11 10 9 13 13 N 1.46903 * 109.45947 * 178.61330 * 11 10 9 14 14 C 1.46896 * 110.99955 * 275.06836 * 13 11 10 15 15 C 1.50701 * 109.46946 * 180.02562 * 14 13 11 16 16 O 1.21293 * 120.00278 * 359.97438 * 15 14 13 17 17 N 1.34777 * 120.00078 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99959 * 179.97438 * 17 15 14 19 19 H 1.07991 * 120.00408 * 359.97438 * 18 17 15 20 20 C 1.38950 * 119.99816 * 179.97438 * 18 17 15 21 21 N 1.31414 * 119.99922 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 120.00126 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.47228 * 179.97438 * 22 20 18 24 24 H 1.48501 * 109.46793 * 299.99915 * 22 20 18 25 25 H 1.48500 * 109.47000 * 60.00007 * 22 20 18 26 26 C 1.53045 * 109.53899 * 298.63245 * 11 10 9 27 27 C 1.46930 * 120.62333 * 180.02562 * 8 6 5 28 28 H 1.08998 * 109.58726 * 353.37424 * 27 8 6 29 29 C 1.52996 * 109.70186 * 113.73275 * 27 8 6 30 30 H 1.09007 * 109.46982 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47351 * 299.99483 * 1 2 3 32 32 H 1.08998 * 109.47318 * 60.00642 * 1 2 3 33 33 H 1.08997 * 109.46916 * 239.99939 * 2 1 3 34 34 H 1.09003 * 109.47423 * 180.02562 * 3 2 1 35 35 H 1.09007 * 109.47419 * 299.99722 * 3 2 1 36 36 H 1.09005 * 109.47606 * 59.99999 * 3 2 1 37 37 H 1.08999 * 109.47228 * 59.99647 * 5 4 2 38 38 H 1.08996 * 109.47345 * 299.99581 * 5 4 2 39 39 H 1.09003 * 109.58488 * 246.20340 * 9 8 6 40 40 H 1.08998 * 109.58731 * 6.47843 * 9 8 6 41 41 H 1.08995 * 109.49470 * 294.67618 * 10 9 8 42 42 H 1.09000 * 109.49276 * 174.58674 * 10 9 8 43 43 H 1.00902 * 110.99560 * 151.11274 * 13 11 10 44 44 H 1.08994 * 109.47346 * 60.00149 * 14 13 11 45 45 H 1.09006 * 109.47133 * 299.99542 * 14 13 11 46 46 H 0.97000 * 119.99555 * 359.97438 * 17 15 14 47 47 H 0.96996 * 120.00340 * 359.97438 * 21 20 18 48 48 H 1.08992 * 109.49945 * 181.31689 * 26 11 10 49 49 H 1.09000 * 109.49716 * 301.41644 * 26 11 10 50 50 H 1.09001 * 109.47216 * 179.35655 * 29 27 8 51 51 H 1.09007 * 109.47297 * 299.35574 * 29 27 8 52 52 H 1.08995 * 109.47680 * 59.35591 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.2002 -2.0781 0.9886 6 6 2.7015 -2.6832 2.2746 7 8 2.8753 -1.9809 3.2480 8 7 2.9558 -4.0050 2.3432 9 6 2.7486 -4.8690 1.1731 10 6 4.0399 -5.6463 0.8993 11 6 4.4587 -6.3946 2.1668 12 1 3.6594 -7.0710 2.4698 13 7 5.6786 -7.1677 1.8983 14 6 5.3551 -8.4734 1.3081 15 6 6.6285 -9.2363 1.0478 16 8 7.7000 -8.7408 1.3261 17 7 6.5766 -10.4688 0.5048 18 6 7.7350 -11.1625 0.2675 19 1 8.6891 -10.7214 0.5153 20 6 7.6816 -12.4334 -0.2918 21 7 6.5206 -12.9704 -0.5929 22 14 9.2600 -13.3784 -0.6159 23 1 8.9330 -14.6987 -1.2117 24 1 10.1138 -12.6085 -1.5557 25 1 9.9878 -13.5796 0.6628 26 6 4.7287 -5.3896 3.2890 27 6 3.4444 -4.6094 3.5901 28 1 3.6549 -3.8259 4.3181 29 6 2.3858 -5.5605 4.1518 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5137 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 2.9320 -2.2466 0.1986 38 1 1.2539 -2.5434 0.7125 39 1 1.9369 -5.5681 1.3743 40 1 2.4974 -4.2570 0.3069 41 1 4.8283 -4.9516 0.6097 42 1 3.8704 -6.3611 0.0941 43 1 6.2297 -7.2762 2.7365 44 1 4.8213 -8.3257 0.3694 45 1 4.7280 -9.0386 1.9977 46 1 5.7197 -10.8648 0.2819 47 1 5.7009 -12.4799 -0.4243 48 1 5.0494 -5.9216 4.1845 49 1 5.5106 -4.6972 2.9769 50 1 2.7566 -6.0154 5.0703 51 1 1.4733 -5.0036 4.3648 52 1 2.1731 -6.3402 3.4205 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754590964.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:33:57 Heat of formation + Delta-G solvation = -146.432301 kcal Electronic energy + Delta-G solvation = -30158.238908 eV Core-core repulsion = 25963.500957 eV Total energy + Delta-G solvation = -4194.737951 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.58943 -40.35509 -39.55054 -38.62280 -36.65330 -36.00500 -34.11864 -33.41781 -33.15119 -32.19144 -29.43672 -28.60286 -28.00229 -27.60147 -25.78638 -24.71808 -23.22445 -22.28435 -21.82088 -21.48096 -19.96717 -19.52505 -18.60880 -18.04116 -17.80020 -17.17800 -16.94812 -16.89526 -16.58956 -16.01594 -15.70405 -15.57844 -15.56551 -15.39629 -15.06834 -14.66298 -14.62292 -14.36917 -13.97856 -13.91642 -13.70005 -13.52443 -13.39603 -13.32009 -13.08055 -12.99481 -12.89827 -12.83328 -12.76271 -12.42179 -12.37808 -12.15043 -11.91617 -11.88854 -11.80382 -11.65456 -11.51989 -11.29117 -10.78665 -10.66125 -10.39244 -10.10090 -9.77201 -9.36851 -8.91707 -6.05744 1.48972 1.53101 1.55336 1.64789 1.83084 2.01921 2.40708 2.77077 2.82333 3.17436 3.33480 3.46208 3.72147 3.74402 3.95769 3.99594 4.06365 4.10349 4.13418 4.15284 4.17624 4.25224 4.29111 4.36954 4.38170 4.46874 4.48772 4.51941 4.63801 4.65737 4.74711 4.80900 4.86891 4.90553 4.93129 4.94774 5.00501 5.05827 5.20685 5.27934 5.32304 5.38513 5.50302 5.60839 5.95949 6.03400 6.13087 6.33310 6.35678 6.59336 6.75842 7.08456 7.45446 7.94362 8.56223 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020357 B = 0.001812 C = 0.001746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.103160 B =15450.888154 C =16036.619775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.071 3.929 3 C -0.151 4.151 4 O -0.394 6.394 5 C 0.046 3.954 6 C 0.510 3.490 7 O -0.576 6.576 8 N -0.601 5.601 9 C 0.106 3.894 10 C -0.123 4.123 11 C 0.090 3.910 12 H 0.066 0.934 13 N -0.681 5.681 14 C 0.068 3.932 15 C 0.440 3.560 16 O -0.620 6.620 17 N -0.586 5.586 18 C -0.411 4.411 19 H 0.071 0.929 20 C -0.041 4.041 21 N -0.916 5.916 22 Si 1.132 2.868 23 H -0.272 1.272 24 H -0.274 1.274 25 H -0.274 1.274 26 C -0.123 4.123 27 C 0.143 3.857 28 H 0.080 0.920 29 C -0.155 4.155 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.054 0.946 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.095 0.905 40 H 0.111 0.889 41 H 0.059 0.941 42 H 0.086 0.914 43 H 0.344 0.656 44 H 0.108 0.892 45 H 0.069 0.931 46 H 0.385 0.615 47 H 0.260 0.740 48 H 0.082 0.918 49 H 0.057 0.943 50 H 0.076 0.924 51 H 0.056 0.944 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.888 20.209 0.173 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 C -0.208 4.208 4 O -0.313 6.313 5 C -0.033 4.033 6 C 0.299 3.701 7 O -0.455 6.455 8 N -0.335 5.335 9 C -0.016 4.016 10 C -0.162 4.162 11 C -0.019 4.019 12 H 0.083 0.917 13 N -0.313 5.313 14 C -0.064 4.064 15 C 0.228 3.772 16 O -0.506 6.506 17 N -0.225 5.225 18 C -0.540 4.540 19 H 0.089 0.911 20 C -0.240 4.240 21 N -0.555 5.555 22 Si 0.952 3.048 23 H -0.197 1.197 24 H -0.199 1.199 25 H -0.199 1.199 26 C -0.161 4.161 27 C 0.039 3.961 28 H 0.098 0.902 29 C -0.213 4.213 30 H 0.081 0.919 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.112 0.888 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.126 0.874 39 H 0.113 0.887 40 H 0.129 0.871 41 H 0.077 0.923 42 H 0.104 0.896 43 H 0.163 0.837 44 H 0.126 0.874 45 H 0.086 0.914 46 H 0.220 0.780 47 H 0.071 0.929 48 H 0.100 0.900 49 H 0.076 0.924 50 H 0.095 0.905 51 H 0.075 0.925 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.327 19.874 -0.165 25.721 hybrid contribution -1.046 0.664 1.272 1.775 sum -17.373 20.538 1.107 26.923 Atomic orbital electron populations 1.22297 0.94891 1.02842 1.03005 1.22418 0.94557 0.94088 0.87515 1.21895 1.01474 0.94321 1.03105 1.88035 1.87105 1.18843 1.37363 1.22413 1.02918 0.83493 0.94492 1.20881 0.77124 0.81860 0.90209 1.90689 1.53792 1.61293 1.39772 1.48246 1.65191 1.06613 1.13478 1.22043 0.97711 0.94235 0.87638 1.21930 0.97188 0.99421 0.97615 1.21614 0.90813 0.94246 0.95231 0.91665 1.60110 1.20124 1.16170 1.34927 1.21583 0.92979 0.89868 1.01998 1.20966 0.91991 0.82196 0.82049 1.90508 1.33099 1.69576 1.57394 1.41983 1.08539 1.15386 1.56626 1.20504 0.87783 1.01678 1.44064 0.91067 1.27768 1.06979 0.95189 0.94020 1.70971 0.98123 1.39990 1.46432 0.82643 0.69651 0.75025 0.77468 1.19686 1.19944 1.19930 1.22031 0.97147 0.98121 0.98847 1.21090 0.93522 0.95484 0.85996 0.90217 1.22106 0.98134 0.99173 1.01920 0.91932 0.93053 0.89608 0.89995 0.92731 0.88825 0.92916 0.88025 0.87445 0.88724 0.87058 0.92255 0.89569 0.83723 0.87367 0.91362 0.78043 0.92899 0.89958 0.92386 0.90476 0.92517 0.90793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.53 71.98 0.69 -1.04 16 2 C 0.07 0.91 3.34 30.59 0.10 1.01 16 3 C -0.15 -1.85 9.56 71.98 0.69 -1.16 16 4 O -0.39 -8.10 9.52 -129.94 -1.24 -9.34 16 5 C 0.05 0.69 4.57 71.24 0.33 1.02 16 6 C 0.51 11.44 7.78 87.66 0.68 12.12 16 7 O -0.58 -18.83 15.91 16.01 0.25 -18.58 16 8 N -0.60 -10.60 2.68 -794.93 -2.13 -12.73 16 9 C 0.11 1.20 5.93 86.36 0.51 1.71 16 10 C -0.12 -2.05 5.59 30.67 0.17 -1.88 16 11 C 0.09 1.79 2.25 44.94 0.10 1.89 16 12 H 0.07 1.11 6.17 -2.39 -0.01 1.09 16 13 N -0.68 -19.63 5.93 -495.44 -2.94 -22.57 16 14 C 0.07 2.10 5.96 85.56 0.51 2.61 16 15 C 0.44 20.21 7.82 87.66 0.69 20.89 16 16 O -0.62 -34.11 15.78 -3.07 -0.05 -34.16 16 17 N -0.59 -28.97 5.28 -306.99 -1.62 -30.59 16 18 C -0.41 -23.21 9.68 84.04 0.81 -22.40 16 19 H 0.07 4.35 7.16 -2.91 -0.02 4.33 16 20 C -0.04 -2.20 5.50 84.93 0.47 -1.74 16 21 N -0.92 -50.13 13.68 21.66 0.30 -49.83 16 22 Si 1.13 47.99 29.92 68.60 2.05 50.04 16 23 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 26 C -0.12 -2.46 4.84 30.69 0.15 -2.31 16 27 C 0.14 2.71 3.20 44.99 0.14 2.85 16 28 H 0.08 1.90 7.00 -2.39 -0.02 1.89 16 29 C -0.16 -2.26 9.03 71.98 0.65 -1.61 16 30 H 0.06 0.54 7.87 -2.38 -0.02 0.52 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.70 7.79 -2.39 -0.02 0.68 16 34 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 36 H 0.05 0.76 8.14 -2.38 -0.02 0.75 16 37 H 0.10 1.07 7.64 -2.39 -0.02 1.05 16 38 H 0.11 0.95 7.67 -2.39 -0.02 0.93 16 39 H 0.09 0.75 7.49 -2.39 -0.02 0.73 16 40 H 0.11 0.69 5.93 -2.39 -0.01 0.68 16 41 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.09 1.34 7.42 -2.39 -0.02 1.32 16 43 H 0.34 10.81 8.03 -89.69 -0.72 10.09 16 44 H 0.11 2.88 7.41 -2.39 -0.02 2.86 16 45 H 0.07 1.80 8.06 -2.38 -0.02 1.78 16 46 H 0.39 17.26 6.73 -92.71 -0.62 16.63 16 47 H 0.26 13.65 6.78 -92.71 -0.63 13.03 16 48 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 49 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 51 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 52 H 0.07 0.91 5.74 -2.39 -0.01 0.89 16 Total: -1.00 -80.31 410.87 1.04 -79.27 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -0.27 Total: 36.52 kcal Atomic # 6 Polarization: 5.28 SS G_CDS: 6.69 Total: 11.97 kcal Atomic # 7 Polarization: -109.33 SS G_CDS: -6.40 Total: -115.73 kcal Atomic # 8 Polarization: -61.04 SS G_CDS: -1.03 Total: -62.07 kcal Atomic # 14 Polarization: 47.99 SS G_CDS: 2.05 Total: 50.04 kcal Total: -80.31 1.04 -79.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754590964.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.160 kcal (2) G-P(sol) polarization free energy of solvation -80.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds