Wall clock time and date at job start Wed Apr 1 2020 00:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47272 * 2 1 4 4 O 1.42900 * 109.46835 * 120.00403 * 2 1 3 5 5 C 1.42897 * 114.00103 * 89.99950 * 4 2 1 6 6 C 1.50704 * 109.46747 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00249 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00071 * 179.97438 * 6 5 4 9 9 C 1.46934 * 120.62967 * 5.71607 * 8 6 5 10 10 C 1.53188 * 108.77661 * 233.63085 * 9 8 6 11 11 C 1.53045 * 109.31061 * 305.36545 * 10 9 8 12 12 H 1.08997 * 109.45918 * 301.33815 * 11 10 9 13 13 N 1.46909 * 109.45748 * 181.38631 * 11 10 9 14 14 C 1.46903 * 110.99671 * 84.99837 * 13 11 10 15 15 C 1.50708 * 109.46550 * 180.02562 * 14 13 11 16 16 O 1.21288 * 120.00242 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99648 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99823 * 179.97438 * 17 15 14 19 19 H 1.08008 * 120.00150 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00276 * 179.97438 * 18 17 15 21 21 N 1.31420 * 119.99866 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00488 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47187 * 90.00038 * 22 20 18 24 24 H 1.48498 * 109.47019 * 210.00239 * 22 20 18 25 25 H 1.48500 * 109.47019 * 329.99950 * 22 20 18 26 26 C 1.53038 * 109.53980 * 61.36598 * 11 10 9 27 27 C 1.46920 * 120.63553 * 185.73697 * 8 6 5 28 28 H 1.08994 * 109.70649 * 246.23112 * 27 8 6 29 29 C 1.53001 * 109.58576 * 6.58566 * 27 8 6 30 30 H 1.09006 * 109.47533 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47425 * 300.00016 * 1 2 3 32 32 H 1.09005 * 109.47112 * 59.99943 * 1 2 3 33 33 H 1.09003 * 109.46607 * 239.99945 * 2 1 3 34 34 H 1.08995 * 109.47311 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47098 * 300.00064 * 3 2 1 36 36 H 1.08996 * 109.46909 * 59.99667 * 3 2 1 37 37 H 1.09003 * 109.47447 * 59.99987 * 5 4 2 38 38 H 1.08999 * 109.47252 * 299.99531 * 5 4 2 39 39 H 1.08996 * 109.58770 * 113.84134 * 9 8 6 40 40 H 1.08999 * 109.58162 * 353.41574 * 9 8 6 41 41 H 1.09004 * 109.49743 * 65.31219 * 10 9 8 42 42 H 1.08996 * 109.49799 * 185.37699 * 10 9 8 43 43 H 1.00901 * 110.99711 * 208.95152 * 13 11 10 44 44 H 1.08996 * 109.47061 * 299.99169 * 14 13 11 45 45 H 1.08994 * 109.46879 * 60.00062 * 14 13 11 46 46 H 0.96996 * 119.99900 * 359.97438 * 17 15 14 47 47 H 0.96995 * 120.00363 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.49561 * 58.58638 * 26 11 10 49 49 H 1.09001 * 109.49755 * 178.67918 * 26 11 10 50 50 H 1.08996 * 109.47555 * 173.76019 * 29 27 8 51 51 H 1.09001 * 109.47136 * 293.76045 * 29 27 8 52 52 H 1.08998 * 109.47490 * 53.75902 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2000 -2.0782 0.9885 6 6 2.7013 -2.6833 2.2745 7 8 2.8751 -1.9810 3.2479 8 7 2.9555 -4.0051 2.3433 9 6 2.8693 -4.8474 1.1425 10 6 1.9313 -6.0236 1.4316 11 6 2.4144 -6.7604 2.6829 12 1 3.4343 -7.1117 2.5265 13 7 1.5363 -7.9089 2.9442 14 6 1.9586 -9.0818 2.1670 15 6 1.0361 -10.2370 2.4600 16 8 0.1177 -10.0971 3.2398 17 7 1.2324 -11.4259 1.8562 18 6 0.3936 -12.4769 2.1231 19 1 -0.4243 -12.3524 2.8175 20 6 0.5955 -13.7025 1.5004 21 7 1.5909 -13.8543 0.6558 22 14 -0.5479 -15.1344 1.8634 23 1 -1.6834 -15.1160 0.9068 24 1 0.1975 -16.4110 1.7225 25 1 -1.0665 -15.0145 3.2497 26 6 2.3807 -5.8098 3.8818 27 6 3.3238 -4.6312 3.6203 28 1 4.3518 -4.9898 3.5709 29 6 3.1913 -3.6081 4.7502 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8899 37 1 2.9319 -2.2468 0.1986 38 1 1.2537 -2.5434 0.7124 39 1 3.8600 -5.2241 0.8884 40 1 2.4750 -4.2611 0.3125 41 1 0.9204 -5.6507 1.5965 42 1 1.9329 -6.7073 0.5827 43 1 1.5025 -8.1213 3.9300 44 1 1.9189 -8.8465 1.1035 45 1 2.9782 -9.3518 2.4418 46 1 1.9671 -11.5379 1.2329 47 1 1.7317 -14.7097 0.2207 48 1 1.3656 -5.4390 4.0235 49 1 2.7026 -6.3417 4.7771 50 1 3.3569 -4.1011 5.7081 51 1 3.9314 -2.8194 4.6148 52 1 2.1913 -3.1748 4.7327 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754590966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:09 Heat of formation + Delta-G solvation = -108.173499 kcal Electronic energy + Delta-G solvation = -30155.529428 eV Core-core repulsion = 25962.450503 eV Total energy + Delta-G solvation = -4193.078925 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.83975 -38.87009 -38.33036 -37.52573 -35.14824 -33.88890 -33.62175 -32.74994 -31.40393 -31.05087 -28.51169 -27.69651 -27.25270 -26.22370 -24.38840 -23.67208 -22.26977 -21.67385 -20.67268 -19.47832 -19.11096 -17.90441 -17.42596 -17.09750 -16.56086 -16.25287 -15.81051 -15.34393 -15.26800 -15.10347 -14.82348 -14.53178 -14.15533 -13.94094 -13.88744 -13.81822 -13.41358 -13.26786 -13.09023 -12.83646 -12.60561 -12.56433 -12.42870 -12.26420 -12.16458 -12.04933 -11.83958 -11.78292 -11.61754 -11.41976 -11.23447 -11.12378 -11.08619 -10.86722 -10.58294 -10.41133 -10.23776 -10.04238 -9.53120 -9.23468 -8.84202 -8.48012 -8.11148 -7.98238 -6.43954 -3.84803 2.34165 2.42388 3.16324 3.25101 3.30951 3.43012 3.88169 4.01351 4.19875 4.25056 4.46736 4.49831 4.58937 4.64017 4.72625 4.76485 4.80860 4.84856 4.93421 5.03362 5.09391 5.20407 5.20604 5.21548 5.28001 5.31955 5.38114 5.39003 5.40758 5.43788 5.59211 5.69976 5.75505 5.78065 5.81637 5.82293 5.91638 5.93812 6.06238 6.16338 6.18321 6.28539 6.47829 6.75086 7.14769 7.20221 7.53177 7.62317 7.98031 8.04170 8.58976 9.15814 9.51960 10.03451 10.73739 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.001824 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.111075 B =15345.757657 C =16106.199162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.149 4.149 4 O -0.358 6.358 5 C 0.042 3.958 6 C 0.517 3.483 7 O -0.512 6.512 8 N -0.608 5.608 9 C 0.106 3.894 10 C -0.125 4.125 11 C 0.088 3.912 12 H 0.044 0.956 13 N -0.665 5.665 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.133 4.133 27 C 0.150 3.850 28 H 0.073 0.927 29 C -0.139 4.139 30 H 0.057 0.943 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.070 0.930 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.073 0.927 40 H 0.083 0.917 41 H 0.076 0.924 42 H 0.079 0.921 43 H 0.351 0.649 44 H 0.085 0.915 45 H 0.043 0.957 46 H 0.392 0.608 47 H 0.271 0.729 48 H 0.078 0.922 49 H 0.076 0.924 50 H 0.046 0.954 51 H 0.077 0.923 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.209 24.854 -4.095 25.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.206 4.206 4 O -0.277 6.277 5 C -0.038 4.038 6 C 0.305 3.695 7 O -0.387 6.387 8 N -0.344 5.344 9 C -0.018 4.018 10 C -0.164 4.164 11 C -0.022 4.022 12 H 0.062 0.938 13 N -0.297 5.297 14 C -0.081 4.081 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.201 5.201 18 C -0.429 4.429 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.543 5.543 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.172 4.172 27 C 0.047 3.953 28 H 0.091 0.909 29 C -0.196 4.196 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.089 0.911 36 H 0.084 0.916 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.102 0.898 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.171 0.829 44 H 0.103 0.897 45 H 0.061 0.939 46 H 0.225 0.775 47 H 0.081 0.919 48 H 0.097 0.903 49 H 0.095 0.905 50 H 0.065 0.935 51 H 0.096 0.904 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.296 25.443 -3.419 26.212 hybrid contribution 0.595 -1.542 -0.308 1.681 sum 5.891 23.901 -3.727 24.897 Atomic orbital electron populations 1.22320 0.95728 1.02573 1.02828 1.22175 0.93885 0.94002 0.87807 1.21848 1.01871 0.94249 1.02660 1.88054 1.86576 1.17726 1.35300 1.22344 1.01126 0.84128 0.96199 1.20164 0.77906 0.81796 0.89675 1.90770 1.50721 1.60647 1.36611 1.48131 1.69407 1.06927 1.09949 1.21860 1.00618 0.92634 0.86653 1.21956 0.99773 0.96117 0.98549 1.21474 0.94568 0.91278 0.94888 0.93814 1.60089 1.51971 1.04156 1.13523 1.21719 0.96460 0.90639 0.99328 1.19820 0.88033 0.83941 0.85655 1.90527 1.34098 1.83237 1.38828 1.41864 1.29031 1.09100 1.40055 1.19707 1.09972 0.88601 1.24634 0.87925 1.25261 0.97449 0.98974 0.96253 1.69611 1.29889 1.26177 1.28662 0.85853 0.79532 0.79822 0.79062 1.20391 1.20934 1.19428 1.22215 1.01197 0.95754 0.97997 1.21259 0.97790 0.93235 0.83005 0.90947 1.22202 1.04445 0.97734 0.95196 0.92380 0.91547 0.91479 0.92076 0.91929 0.91126 0.91585 0.90535 0.90289 0.90877 0.89820 0.90499 0.90275 0.82854 0.89708 0.93900 0.77488 0.91878 0.90295 0.90516 0.93518 0.90393 0.91564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.16 9.53 37.16 0.35 -0.80 16 2 C 0.08 0.57 3.34 -26.73 -0.09 0.48 16 3 C -0.15 -0.94 9.56 37.16 0.36 -0.58 16 4 O -0.36 -3.77 9.52 -55.14 -0.52 -4.29 16 5 C 0.04 0.36 4.58 36.01 0.16 0.52 16 6 C 0.52 5.80 7.58 -10.98 -0.08 5.72 16 7 O -0.51 -7.48 12.07 -14.35 -0.17 -7.66 16 8 N -0.61 -5.86 2.97 -165.22 -0.49 -6.35 16 9 C 0.11 0.79 6.35 -3.71 -0.02 0.77 16 10 C -0.13 -1.23 5.59 -26.61 -0.15 -1.37 16 11 C 0.09 1.00 2.46 -67.66 -0.17 0.83 16 12 H 0.04 0.47 7.80 -51.93 -0.40 0.07 16 13 N -0.66 -10.16 5.93 -107.94 -0.64 -10.80 16 14 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 15 C 0.44 10.19 7.82 -10.98 -0.09 10.10 16 16 O -0.58 -15.68 15.78 5.55 0.09 -15.59 16 17 N -0.56 -14.07 5.29 -10.96 -0.06 -14.13 16 18 C -0.30 -8.29 9.68 -14.94 -0.14 -8.44 16 19 H 0.10 2.99 7.16 -52.48 -0.38 2.61 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 22 Si 0.93 20.89 29.55 -169.99 -5.02 15.87 16 23 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C -0.13 -1.40 4.65 -26.61 -0.12 -1.52 16 27 C 0.15 1.50 3.49 -67.60 -0.24 1.27 16 28 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 29 C -0.14 -1.54 7.61 37.16 0.28 -1.26 16 30 H 0.06 0.38 7.87 -51.93 -0.41 -0.03 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.34 7.79 -51.93 -0.40 -0.06 16 34 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.47 7.65 -51.93 -0.40 0.07 16 38 H 0.08 0.56 7.65 -51.93 -0.40 0.16 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.08 0.45 5.93 -51.93 -0.31 0.14 16 41 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.08 0.77 7.43 -51.93 -0.39 0.39 16 43 H 0.35 5.65 8.03 -39.29 -0.32 5.33 16 44 H 0.08 1.30 7.42 -51.93 -0.39 0.91 16 45 H 0.04 0.65 8.05 -51.93 -0.42 0.24 16 46 H 0.39 9.31 7.90 -40.82 -0.32 8.99 16 47 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 48 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 49 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 50 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.08 0.97 6.58 -51.93 -0.34 0.63 16 52 H 0.07 0.85 6.92 -51.93 -0.36 0.49 16 LS Contribution 411.18 15.07 6.20 6.20 Total: -1.00 -33.51 411.18 -8.98 -42.49 By element: Atomic # 1 Polarization: 19.76 SS G_CDS: -9.01 Total: 10.75 kcal Atomic # 6 Polarization: 7.11 SS G_CDS: -0.07 Total: 7.04 kcal Atomic # 7 Polarization: -54.35 SS G_CDS: -0.47 Total: -54.81 kcal Atomic # 8 Polarization: -26.93 SS G_CDS: -0.61 Total: -27.54 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.51 -8.98 -42.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754590966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.681 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds