Wall clock time and date at job start Wed Apr 1 2020 00:34:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47272 * 2 1 4 4 O 1.42900 * 109.46835 * 120.00403 * 2 1 3 5 5 C 1.42897 * 114.00103 * 89.99950 * 4 2 1 6 6 C 1.50704 * 109.46747 * 179.97438 * 5 4 2 7 7 O 1.21278 * 120.00249 * 0.02562 * 6 5 4 8 8 N 1.34776 * 120.00071 * 179.97438 * 6 5 4 9 9 C 1.46934 * 120.62967 * 5.71607 * 8 6 5 10 10 C 1.53188 * 108.77661 * 233.63085 * 9 8 6 11 11 C 1.53045 * 109.31061 * 305.36545 * 10 9 8 12 12 H 1.08997 * 109.45918 * 301.33815 * 11 10 9 13 13 N 1.46909 * 109.45748 * 181.38631 * 11 10 9 14 14 C 1.46903 * 110.99671 * 84.99837 * 13 11 10 15 15 C 1.50708 * 109.46550 * 180.02562 * 14 13 11 16 16 O 1.21288 * 120.00242 * 359.97438 * 15 14 13 17 17 N 1.34777 * 119.99648 * 180.02562 * 15 14 13 18 18 C 1.37095 * 119.99823 * 179.97438 * 17 15 14 19 19 H 1.08008 * 120.00150 * 359.97438 * 18 17 15 20 20 C 1.38945 * 120.00276 * 179.97438 * 18 17 15 21 21 N 1.31420 * 119.99866 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 120.00488 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47187 * 90.00038 * 22 20 18 24 24 H 1.48498 * 109.47019 * 210.00239 * 22 20 18 25 25 H 1.48500 * 109.47019 * 329.99950 * 22 20 18 26 26 C 1.53038 * 109.53980 * 61.36598 * 11 10 9 27 27 C 1.46920 * 120.63553 * 185.73697 * 8 6 5 28 28 H 1.08994 * 109.70649 * 246.23112 * 27 8 6 29 29 C 1.53001 * 109.58576 * 6.58566 * 27 8 6 30 30 H 1.09006 * 109.47533 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47425 * 300.00016 * 1 2 3 32 32 H 1.09005 * 109.47112 * 59.99943 * 1 2 3 33 33 H 1.09003 * 109.46607 * 239.99945 * 2 1 3 34 34 H 1.08995 * 109.47311 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.47098 * 300.00064 * 3 2 1 36 36 H 1.08996 * 109.46909 * 59.99667 * 3 2 1 37 37 H 1.09003 * 109.47447 * 59.99987 * 5 4 2 38 38 H 1.08999 * 109.47252 * 299.99531 * 5 4 2 39 39 H 1.08996 * 109.58770 * 113.84134 * 9 8 6 40 40 H 1.08999 * 109.58162 * 353.41574 * 9 8 6 41 41 H 1.09004 * 109.49743 * 65.31219 * 10 9 8 42 42 H 1.08996 * 109.49799 * 185.37699 * 10 9 8 43 43 H 1.00901 * 110.99711 * 208.95152 * 13 11 10 44 44 H 1.08996 * 109.47061 * 299.99169 * 14 13 11 45 45 H 1.08994 * 109.46879 * 60.00062 * 14 13 11 46 46 H 0.96996 * 119.99900 * 359.97438 * 17 15 14 47 47 H 0.96995 * 120.00363 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.49561 * 58.58638 * 26 11 10 49 49 H 1.09001 * 109.49755 * 178.67918 * 26 11 10 50 50 H 1.08996 * 109.47555 * 173.76019 * 29 27 8 51 51 H 1.09001 * 109.47136 * 293.76045 * 29 27 8 52 52 H 1.08998 * 109.47490 * 53.75902 * 29 27 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0063 -0.6737 1.1667 5 6 2.2000 -2.0782 0.9885 6 6 2.7013 -2.6833 2.2745 7 8 2.8751 -1.9810 3.2479 8 7 2.9555 -4.0051 2.3433 9 6 2.8693 -4.8474 1.1425 10 6 1.9313 -6.0236 1.4316 11 6 2.4144 -6.7604 2.6829 12 1 3.4343 -7.1117 2.5265 13 7 1.5363 -7.9089 2.9442 14 6 1.9586 -9.0818 2.1670 15 6 1.0361 -10.2370 2.4600 16 8 0.1177 -10.0971 3.2398 17 7 1.2324 -11.4259 1.8562 18 6 0.3936 -12.4769 2.1231 19 1 -0.4243 -12.3524 2.8175 20 6 0.5955 -13.7025 1.5004 21 7 1.5909 -13.8543 0.6558 22 14 -0.5479 -15.1344 1.8634 23 1 -1.6834 -15.1160 0.9068 24 1 0.1975 -16.4110 1.7225 25 1 -1.0665 -15.0145 3.2497 26 6 2.3807 -5.8098 3.8818 27 6 3.3238 -4.6312 3.6203 28 1 4.3518 -4.9898 3.5709 29 6 3.1913 -3.6081 4.7502 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9562 0.8899 37 1 2.9319 -2.2468 0.1986 38 1 1.2537 -2.5434 0.7124 39 1 3.8600 -5.2241 0.8884 40 1 2.4750 -4.2611 0.3125 41 1 0.9204 -5.6507 1.5965 42 1 1.9329 -6.7073 0.5827 43 1 1.5025 -8.1213 3.9300 44 1 1.9189 -8.8465 1.1035 45 1 2.9782 -9.3518 2.4418 46 1 1.9671 -11.5379 1.2329 47 1 1.7317 -14.7097 0.2207 48 1 1.3656 -5.4390 4.0235 49 1 2.7026 -6.3417 4.7771 50 1 3.3569 -4.1011 5.7081 51 1 3.9314 -2.8194 4.6148 52 1 2.1913 -3.1748 4.7327 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754590966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:06 Heat of formation + Delta-G solvation = -131.893617 kcal Electronic energy + Delta-G solvation = -30156.558009 eV Core-core repulsion = 25962.450503 eV Total energy + Delta-G solvation = -4194.107506 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -41.64945 -40.19760 -39.40519 -38.53053 -36.35152 -35.75300 -34.33852 -33.39836 -33.27136 -32.22379 -29.40217 -28.37230 -27.92687 -27.66788 -25.86425 -24.67414 -23.10537 -22.22009 -21.56726 -21.08233 -20.11989 -19.85785 -18.11504 -17.83290 -17.79184 -17.31079 -16.86967 -16.57998 -16.35503 -16.16855 -15.83647 -15.70357 -15.48006 -15.33854 -14.87524 -14.75766 -14.40850 -14.25753 -13.84869 -13.75414 -13.56763 -13.51462 -13.34570 -13.32699 -13.17431 -13.04365 -12.90166 -12.77636 -12.66141 -12.58582 -12.41034 -12.34180 -12.12138 -12.04746 -11.75495 -11.63317 -11.50111 -11.44193 -10.63761 -10.33105 -10.10243 -10.00572 -9.63761 -9.31062 -8.46260 -5.94730 1.38295 1.42386 1.54478 1.54835 1.71687 2.06671 2.29528 2.82490 2.89967 3.21278 3.46456 3.53295 3.76032 3.79881 3.98377 4.03210 4.09891 4.14280 4.18671 4.25974 4.27957 4.29674 4.32010 4.45893 4.48168 4.52610 4.53787 4.60844 4.71356 4.74646 4.77285 4.83101 4.88600 4.90642 4.95050 4.98256 5.04238 5.21271 5.29352 5.32960 5.33064 5.38118 5.41914 5.63348 5.92443 6.14634 6.17163 6.40544 6.41907 6.61294 7.13679 7.18311 7.57600 8.13327 8.70959 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019880 B = 0.001824 C = 0.001738 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.111075 B =15345.757657 C =16106.199162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.073 3.927 3 C -0.149 4.149 4 O -0.392 6.392 5 C 0.043 3.957 6 C 0.509 3.491 7 O -0.557 6.557 8 N -0.606 5.606 9 C 0.108 3.892 10 C -0.122 4.122 11 C 0.089 3.911 12 H 0.061 0.939 13 N -0.680 5.680 14 C 0.068 3.932 15 C 0.436 3.564 16 O -0.625 6.625 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.077 0.923 20 C -0.012 4.012 21 N -0.919 5.919 22 Si 0.991 3.009 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.274 1.274 26 C -0.125 4.125 27 C 0.152 3.848 28 H 0.090 0.910 29 C -0.129 4.129 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.110 0.890 41 H 0.059 0.941 42 H 0.085 0.915 43 H 0.343 0.657 44 H 0.107 0.893 45 H 0.067 0.933 46 H 0.397 0.603 47 H 0.278 0.722 48 H 0.059 0.941 49 H 0.081 0.919 50 H 0.057 0.943 51 H 0.062 0.938 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.264 24.741 -6.180 26.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.016 3.984 3 C -0.206 4.206 4 O -0.311 6.311 5 C -0.037 4.037 6 C 0.297 3.703 7 O -0.435 6.435 8 N -0.341 5.341 9 C -0.014 4.014 10 C -0.161 4.161 11 C -0.020 4.020 12 H 0.079 0.921 13 N -0.313 5.313 14 C -0.065 4.065 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.211 4.211 21 N -0.560 5.560 22 Si 0.815 3.185 23 H -0.197 1.197 24 H -0.195 1.195 25 H -0.199 1.199 26 C -0.163 4.163 27 C 0.048 3.952 28 H 0.108 0.892 29 C -0.186 4.186 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.102 0.898 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.069 0.931 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.128 0.872 41 H 0.078 0.922 42 H 0.104 0.896 43 H 0.163 0.837 44 H 0.125 0.875 45 H 0.085 0.915 46 H 0.231 0.769 47 H 0.087 0.913 48 H 0.077 0.923 49 H 0.100 0.900 50 H 0.076 0.924 51 H 0.081 0.919 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.376 25.328 -5.549 26.701 hybrid contribution 0.257 -1.456 0.364 1.522 sum 6.632 23.872 -5.185 25.313 Atomic orbital electron populations 1.22316 0.95498 1.02542 1.02941 1.22397 0.94128 0.94267 0.87646 1.21877 1.01647 0.94064 1.03007 1.88025 1.86997 1.18790 1.37314 1.22451 1.02564 0.83415 0.95222 1.20757 0.77257 0.82016 0.90221 1.90756 1.52662 1.61764 1.38331 1.48223 1.68573 1.06815 1.10471 1.22039 1.01320 0.91751 0.86316 1.21933 0.99440 0.96902 0.97863 1.21589 0.94719 0.89924 0.95766 0.92099 1.60125 1.53713 1.04541 1.12888 1.21576 0.95554 0.88563 1.00771 1.20965 0.87977 0.84745 0.83912 1.90497 1.36202 1.84097 1.40408 1.41924 1.29027 1.09392 1.40670 1.19651 1.10712 0.90410 1.25645 0.90487 1.26002 0.98727 1.00734 0.95686 1.69663 1.30539 1.27042 1.28721 0.84951 0.77896 0.77081 0.78556 1.19683 1.19505 1.19935 1.22115 1.00251 0.95796 0.98167 1.21236 0.98431 0.92464 0.83032 0.89241 1.22036 1.02448 0.97620 0.96484 0.92469 0.93182 0.89607 0.89828 0.92280 0.88942 0.93070 0.87469 0.88741 0.88755 0.87169 0.92227 0.89643 0.83743 0.87493 0.91512 0.76898 0.91299 0.92257 0.90013 0.92435 0.91873 0.93988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.08 9.53 71.98 0.69 -1.39 16 2 C 0.07 0.93 3.34 30.59 0.10 1.03 16 3 C -0.15 -1.72 9.56 71.98 0.69 -1.03 16 4 O -0.39 -7.94 9.52 -129.94 -1.24 -9.17 16 5 C 0.04 0.64 4.58 71.24 0.33 0.97 16 6 C 0.51 10.96 7.58 87.66 0.66 11.62 16 7 O -0.56 -16.66 12.07 16.01 0.19 -16.47 16 8 N -0.61 -10.56 2.97 -795.04 -2.36 -12.93 16 9 C 0.11 1.24 6.35 86.36 0.55 1.79 16 10 C -0.12 -2.08 5.59 30.67 0.17 -1.91 16 11 C 0.09 1.82 2.46 44.94 0.11 1.93 16 12 H 0.06 1.08 7.80 -2.39 -0.02 1.07 16 13 N -0.68 -19.94 5.93 -495.41 -2.94 -22.88 16 14 C 0.07 2.14 5.97 85.56 0.51 2.65 16 15 C 0.44 20.20 7.82 87.66 0.69 20.89 16 16 O -0.63 -34.35 15.78 -3.05 -0.05 -34.40 16 17 N -0.57 -28.73 5.29 -306.98 -1.62 -30.35 16 18 C -0.33 -18.81 9.68 84.04 0.81 -18.00 16 19 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 20 C -0.01 -0.61 5.50 84.92 0.47 -0.15 16 21 N -0.92 -48.66 13.05 21.66 0.28 -48.37 16 22 Si 0.99 42.49 29.55 68.60 2.03 44.52 16 23 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 24 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 C -0.12 -2.49 4.65 30.67 0.14 -2.34 16 27 C 0.15 2.83 3.49 44.98 0.16 2.99 16 28 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 29 C -0.13 -2.89 7.61 71.98 0.55 -2.35 16 30 H 0.06 0.67 7.87 -2.38 -0.02 0.65 16 31 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.09 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.08 0.68 7.79 -2.39 -0.02 0.66 16 34 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.11 0.92 7.65 -2.39 -0.02 0.91 16 38 H 0.09 1.11 7.65 -2.39 -0.02 1.09 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 40 H 0.11 0.72 5.93 -2.39 -0.01 0.71 16 41 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.09 1.38 7.43 -2.39 -0.02 1.36 16 43 H 0.34 10.92 8.03 -89.69 -0.72 10.20 16 44 H 0.11 2.96 7.42 -2.39 -0.02 2.94 16 45 H 0.07 1.84 8.05 -2.39 -0.02 1.82 16 46 H 0.40 18.72 7.90 -92.71 -0.73 17.99 16 47 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 48 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 49 H 0.08 1.54 8.10 -2.39 -0.02 1.52 16 50 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 51 H 0.06 1.62 6.58 -2.39 -0.02 1.60 16 52 H 0.04 1.14 6.92 -2.39 -0.02 1.12 16 Total: -1.00 -75.23 411.18 0.38 -74.84 By element: Atomic # 1 Polarization: 39.03 SS G_CDS: -0.53 Total: 38.50 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: 6.62 Total: 16.71 kcal Atomic # 7 Polarization: -107.89 SS G_CDS: -6.64 Total: -114.53 kcal Atomic # 8 Polarization: -58.95 SS G_CDS: -1.09 Total: -60.04 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -75.23 0.38 -74.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754590966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.050 kcal (2) G-P(sol) polarization free energy of solvation -75.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds