Wall clock time and date at job start Wed Apr 1 2020 00:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46830 * 2 1 4 4 O 1.42891 * 109.47559 * 120.00168 * 2 1 3 5 5 C 1.42902 * 114.00011 * 89.99925 * 4 2 1 6 6 C 1.53004 * 109.46921 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.46941 * 180.02562 * 6 5 4 8 8 O 1.21276 * 119.99720 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99902 * 179.97438 * 7 6 5 10 10 C 1.47418 * 125.65102 * 4.88905 * 9 7 6 11 11 C 1.54910 * 104.83357 * 204.16602 * 10 9 7 12 12 C 1.55147 * 101.58166 * 322.98824 * 11 10 9 13 13 C 1.47022 * 125.64682 * 184.93271 * 9 7 6 14 14 H 1.09001 * 110.01091 * 59.41268 * 13 9 7 15 15 C 1.53003 * 109.88329 * 298.32340 * 13 9 7 16 16 N 1.46902 * 109.47047 * 177.05297 * 15 13 9 17 17 C 1.46899 * 110.99830 * 184.90100 * 16 15 13 18 18 C 1.50698 * 109.46800 * 179.97438 * 17 16 15 19 19 O 1.21295 * 120.00159 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99856 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00038 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00137 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00030 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99808 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99999 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47081 * 89.99996 * 25 23 21 27 27 H 1.48501 * 109.47100 * 209.99376 * 25 23 21 28 28 H 1.48493 * 109.47459 * 329.99994 * 25 23 21 29 29 H 1.09007 * 109.47003 * 60.00089 * 1 2 3 30 30 H 1.09004 * 109.47029 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47311 * 300.00059 * 1 2 3 32 32 H 1.09002 * 109.47279 * 240.00728 * 2 1 3 33 33 H 1.09001 * 109.46986 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47364 * 299.99848 * 3 2 1 35 35 H 1.08996 * 109.46797 * 60.00668 * 3 2 1 36 36 H 1.08993 * 109.46952 * 60.00183 * 5 4 2 37 37 H 1.08998 * 109.46900 * 300.00040 * 5 4 2 38 38 H 1.08993 * 109.47698 * 59.99979 * 6 5 4 39 39 H 1.08998 * 109.46826 * 299.99424 * 6 5 4 40 40 H 1.09004 * 110.36858 * 323.00580 * 10 9 7 41 41 H 1.09000 * 110.36766 * 85.21355 * 10 9 7 42 42 H 1.09004 * 111.00056 * 204.91594 * 11 10 9 43 43 H 1.09004 * 111.00076 * 81.06869 * 11 10 9 44 44 H 1.08998 * 110.72502 * 277.14002 * 12 11 10 45 45 H 1.09005 * 110.71922 * 153.86081 * 12 11 10 46 46 H 1.09002 * 109.46677 * 297.05011 * 15 13 9 47 47 H 1.08997 * 109.47003 * 57.05406 * 15 13 9 48 48 H 1.00901 * 110.99761 * 308.85988 * 16 15 13 49 49 H 1.08996 * 109.46716 * 299.99958 * 17 16 15 50 50 H 1.08994 * 109.47070 * 60.00292 * 17 16 15 51 51 H 0.96998 * 120.00049 * 359.97438 * 20 18 17 52 52 H 0.97003 * 120.00027 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1666 5 6 2.2002 -2.0782 0.9884 6 6 2.7081 -2.6926 2.2944 7 6 2.9130 -4.1738 2.1063 8 8 2.6757 -4.6873 1.0335 9 7 3.3600 -4.9276 3.1301 10 6 3.5898 -4.4562 4.5079 11 6 4.6342 -5.4387 5.0942 12 6 4.1895 -6.7821 4.4580 13 6 3.7000 -6.3561 3.0578 14 1 4.4908 -6.5147 2.3245 15 6 2.4616 -7.1669 2.6705 16 7 2.8270 -8.5830 2.5320 17 6 1.6888 -9.3754 2.0478 18 6 2.1009 -10.8191 1.9179 19 8 3.2314 -11.1549 2.2013 20 7 1.2129 -11.7372 1.4878 21 6 1.5877 -13.0507 1.3701 22 1 2.5945 -13.3496 1.6216 23 6 0.6724 -13.9973 0.9261 24 7 -0.5526 -13.6334 0.6195 25 14 1.1832 -15.7868 0.7651 26 1 0.9186 -16.4940 2.0438 27 1 0.4047 -16.4276 -0.3252 28 1 2.6321 -15.8615 0.4487 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.9320 -2.2466 0.1985 37 1 1.2539 -2.5433 0.7123 38 1 1.9760 -2.5242 3.0841 39 1 3.6543 -2.2276 2.5708 40 1 3.9865 -3.4409 4.5003 41 1 2.6642 -4.4966 5.0820 42 1 4.5650 -5.4794 6.1813 43 1 5.6425 -5.1714 4.7781 44 1 3.3774 -7.2299 5.0307 45 1 5.0321 -7.4691 4.3795 46 1 1.7018 -7.0617 3.4450 47 1 2.0681 -6.7988 1.7231 48 1 3.6273 -8.6924 1.9273 49 1 0.8632 -9.2950 2.7548 50 1 1.3720 -8.9994 1.0750 51 1 0.3085 -11.4689 1.2622 52 1 -1.1917 -14.2942 0.3100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754606547.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:59 Heat of formation + Delta-G solvation = -126.812654 kcal Electronic energy + Delta-G solvation = -29475.717410 eV Core-core repulsion = 25281.830231 eV Total energy + Delta-G solvation = -4193.887179 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.53451 -38.82184 -38.23635 -37.68132 -35.23662 -33.82751 -33.67747 -32.12416 -31.21688 -30.93989 -29.98560 -27.63791 -26.77915 -25.09328 -24.40794 -23.09468 -22.38151 -21.71908 -20.96264 -19.44532 -18.90425 -17.89147 -17.71158 -16.88807 -16.70818 -16.13933 -15.86884 -15.44993 -15.34624 -14.96432 -14.76302 -14.47935 -14.21454 -13.97131 -13.81469 -13.63090 -13.50157 -13.31091 -13.15859 -12.94973 -12.78724 -12.63132 -12.34999 -12.29758 -12.14255 -11.83126 -11.67022 -11.58373 -11.55112 -11.46089 -11.37522 -11.05463 -11.04701 -10.86481 -10.83653 -10.37105 -10.18824 -10.05383 -9.91610 -9.47560 -8.91056 -8.39459 -7.99876 -7.91836 -6.38335 -3.79084 2.37439 2.52385 3.20251 3.28460 3.34164 3.35640 3.95388 4.14823 4.21339 4.29532 4.43708 4.49663 4.57050 4.62149 4.65484 4.74003 4.78382 4.85905 4.94456 5.06421 5.16147 5.19010 5.20155 5.21716 5.28220 5.30137 5.37999 5.40647 5.43151 5.45992 5.52538 5.56740 5.63325 5.76252 5.81148 5.82586 5.83846 5.88150 5.96880 6.05196 6.17498 6.22639 6.32964 6.86437 7.20507 7.29436 7.58267 7.69471 7.91416 8.09866 8.65066 9.21184 9.58260 10.09798 10.79502 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.001818 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.806984 B =15398.060129 C =17049.634942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 C -0.149 4.149 4 O -0.387 6.387 5 C 0.077 3.923 6 C -0.134 4.134 7 C 0.531 3.469 8 O -0.535 6.535 9 N -0.614 5.614 10 C 0.098 3.902 11 C -0.137 4.137 12 C -0.114 4.114 13 C 0.140 3.860 14 H 0.076 0.924 15 C 0.048 3.952 16 N -0.663 5.663 17 C 0.052 3.948 18 C 0.443 3.557 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.072 0.928 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.084 0.916 45 H 0.087 0.913 46 H 0.069 0.931 47 H 0.045 0.955 48 H 0.348 0.652 49 H 0.085 0.915 50 H 0.044 0.956 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.392 29.626 5.123 30.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.024 3.976 3 C -0.207 4.207 4 O -0.307 6.307 5 C 0.000 4.000 6 C -0.174 4.174 7 C 0.320 3.680 8 O -0.412 6.412 9 N -0.349 5.349 10 C -0.025 4.025 11 C -0.175 4.175 12 C -0.152 4.152 13 C 0.036 3.964 14 H 0.094 0.906 15 C -0.082 4.082 16 N -0.296 5.296 17 C -0.080 4.080 18 C 0.228 3.772 19 O -0.468 6.468 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.210 1.210 28 H -0.194 1.194 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.076 0.924 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.095 0.905 41 H 0.090 0.910 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.103 0.897 45 H 0.106 0.894 46 H 0.088 0.912 47 H 0.063 0.937 48 H 0.167 0.833 49 H 0.103 0.897 50 H 0.062 0.938 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.751 29.004 5.418 29.886 hybrid contribution -0.645 -0.613 -1.337 1.606 sum 4.107 28.391 4.081 28.975 Atomic orbital electron populations 1.22310 0.95904 1.02594 1.02582 1.22077 0.93730 0.93672 0.88096 1.21866 1.01782 0.94470 1.02536 1.87831 1.86760 1.20044 1.36046 1.22150 1.00619 0.80958 0.96244 1.21444 1.04334 0.91664 0.99917 1.20075 0.76614 0.88310 0.83015 1.90743 1.50442 1.74265 1.25773 1.48541 1.65904 1.10424 1.10021 1.22390 0.99300 0.98645 0.82150 1.22836 0.98589 0.95220 1.00858 1.22606 1.02450 0.96438 0.93726 1.21572 0.96851 0.79146 0.98797 0.90629 1.22306 0.96652 0.88235 1.01044 1.60084 1.07365 1.05940 1.56228 1.21649 0.94071 0.93425 0.98903 1.19801 0.86664 0.86620 0.84106 1.90512 1.20487 1.81106 1.54658 1.41862 1.12817 1.07468 1.57960 1.19709 0.99079 0.82615 1.41460 0.87914 1.25267 0.95043 1.00538 0.97160 1.69618 1.04008 1.35452 1.45277 0.85848 0.78693 0.81818 0.77855 1.20411 1.20969 1.19443 0.91602 0.92305 0.91764 0.92061 0.92006 0.91216 0.91790 0.92402 0.92368 0.88135 0.88132 0.90500 0.91007 0.89679 0.90663 0.89701 0.89423 0.91241 0.93700 0.83284 0.89722 0.93836 0.77459 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.19 9.53 37.16 0.35 -0.83 16 2 C 0.08 0.61 3.34 -26.73 -0.09 0.52 16 3 C -0.15 -0.87 9.56 37.16 0.36 -0.52 16 4 O -0.39 -3.57 9.99 -35.23 -0.35 -3.92 16 5 C 0.08 0.72 5.04 37.16 0.19 0.91 16 6 C -0.13 -1.10 5.00 -27.88 -0.14 -1.24 16 7 C 0.53 6.06 7.67 -10.98 -0.08 5.97 16 8 O -0.54 -8.23 14.80 5.56 0.08 -8.15 16 9 N -0.61 -6.22 3.06 -163.02 -0.50 -6.72 16 10 C 0.10 0.66 6.74 -2.53 -0.02 0.64 16 11 C -0.14 -0.92 7.08 -24.59 -0.17 -1.09 16 12 C -0.11 -1.12 6.24 -24.90 -0.16 -1.27 16 13 C 0.14 1.64 3.04 -66.95 -0.20 1.44 16 14 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 15 C 0.05 0.68 5.08 -3.82 -0.02 0.66 16 16 N -0.66 -11.27 5.91 -115.06 -0.68 -11.95 16 17 C 0.05 0.99 6.16 -4.98 -0.03 0.96 16 18 C 0.44 10.81 7.82 -10.99 -0.09 10.72 16 19 O -0.58 -16.14 15.78 5.54 0.09 -16.05 16 20 N -0.56 -14.75 5.29 -10.96 -0.06 -14.81 16 21 C -0.30 -8.53 9.68 -14.93 -0.14 -8.67 16 22 H 0.10 3.06 7.16 -52.49 -0.38 2.68 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -25.04 13.05 55.50 0.72 -24.32 16 25 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 26 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 28 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 29 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.43 7.87 -51.93 -0.41 0.03 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.44 7.79 -51.93 -0.40 0.04 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 37 H 0.06 0.59 7.83 -51.93 -0.41 0.18 16 38 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.10 0.67 7.95 -51.93 -0.41 0.26 16 40 H 0.08 0.37 7.47 -51.93 -0.39 -0.02 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 43 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.08 0.90 7.80 -51.93 -0.41 0.50 16 45 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.07 0.96 8.07 -51.93 -0.42 0.54 16 47 H 0.04 0.72 6.60 -51.93 -0.34 0.38 16 48 H 0.35 6.17 8.36 -39.29 -0.33 5.85 16 49 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 50 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.39 9.84 7.90 -40.82 -0.32 9.52 16 52 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 LS Contribution 423.22 15.07 6.38 6.38 Total: -1.00 -33.80 423.22 -8.95 -42.75 By element: Atomic # 1 Polarization: 20.99 SS G_CDS: -9.26 Total: 11.73 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.34 Total: 8.69 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: -0.51 Total: -57.80 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -0.18 Total: -28.12 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -33.80 -8.95 -42.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754606547.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.067 kcal (2) G-P(sol) polarization free energy of solvation -33.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds