Wall clock time and date at job start Wed Apr 1 2020 00:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.46830 * 2 1 4 4 O 1.42891 * 109.47559 * 120.00168 * 2 1 3 5 5 C 1.42902 * 114.00011 * 89.99925 * 4 2 1 6 6 C 1.53004 * 109.46921 * 180.02562 * 5 4 2 7 7 C 1.50706 * 109.46941 * 180.02562 * 6 5 4 8 8 O 1.21276 * 119.99720 * 359.97438 * 7 6 5 9 9 N 1.34772 * 119.99902 * 179.97438 * 7 6 5 10 10 C 1.47418 * 125.65102 * 4.88905 * 9 7 6 11 11 C 1.54910 * 104.83357 * 204.16602 * 10 9 7 12 12 C 1.55147 * 101.58166 * 322.98824 * 11 10 9 13 13 C 1.47022 * 125.64682 * 184.93271 * 9 7 6 14 14 H 1.09001 * 110.01091 * 59.41268 * 13 9 7 15 15 C 1.53003 * 109.88329 * 298.32340 * 13 9 7 16 16 N 1.46902 * 109.47047 * 177.05297 * 15 13 9 17 17 C 1.46899 * 110.99830 * 184.90100 * 16 15 13 18 18 C 1.50698 * 109.46800 * 179.97438 * 17 16 15 19 19 O 1.21295 * 120.00159 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99856 * 179.97438 * 18 17 16 21 21 C 1.37094 * 120.00038 * 180.02562 * 20 18 17 22 22 H 1.07998 * 120.00137 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00030 * 180.02562 * 21 20 18 24 24 N 1.31411 * 119.99808 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99999 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47081 * 89.99996 * 25 23 21 27 27 H 1.48501 * 109.47100 * 209.99376 * 25 23 21 28 28 H 1.48493 * 109.47459 * 329.99994 * 25 23 21 29 29 H 1.09007 * 109.47003 * 60.00089 * 1 2 3 30 30 H 1.09004 * 109.47029 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47311 * 300.00059 * 1 2 3 32 32 H 1.09002 * 109.47279 * 240.00728 * 2 1 3 33 33 H 1.09001 * 109.46986 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47364 * 299.99848 * 3 2 1 35 35 H 1.08996 * 109.46797 * 60.00668 * 3 2 1 36 36 H 1.08993 * 109.46952 * 60.00183 * 5 4 2 37 37 H 1.08998 * 109.46900 * 300.00040 * 5 4 2 38 38 H 1.08993 * 109.47698 * 59.99979 * 6 5 4 39 39 H 1.08998 * 109.46826 * 299.99424 * 6 5 4 40 40 H 1.09004 * 110.36858 * 323.00580 * 10 9 7 41 41 H 1.09000 * 110.36766 * 85.21355 * 10 9 7 42 42 H 1.09004 * 111.00056 * 204.91594 * 11 10 9 43 43 H 1.09004 * 111.00076 * 81.06869 * 11 10 9 44 44 H 1.08998 * 110.72502 * 277.14002 * 12 11 10 45 45 H 1.09005 * 110.71922 * 153.86081 * 12 11 10 46 46 H 1.09002 * 109.46677 * 297.05011 * 15 13 9 47 47 H 1.08997 * 109.47003 * 57.05406 * 15 13 9 48 48 H 1.00901 * 110.99761 * 308.85988 * 16 15 13 49 49 H 1.08996 * 109.46716 * 299.99958 * 17 16 15 50 50 H 1.08994 * 109.47070 * 60.00292 * 17 16 15 51 51 H 0.96998 * 120.00049 * 359.97438 * 20 18 17 52 52 H 0.97003 * 120.00027 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0064 -0.6736 1.1666 5 6 2.2002 -2.0782 0.9884 6 6 2.7081 -2.6926 2.2944 7 6 2.9130 -4.1738 2.1063 8 8 2.6757 -4.6873 1.0335 9 7 3.3600 -4.9276 3.1301 10 6 3.5898 -4.4562 4.5079 11 6 4.6342 -5.4387 5.0942 12 6 4.1895 -6.7821 4.4580 13 6 3.7000 -6.3561 3.0578 14 1 4.4908 -6.5147 2.3245 15 6 2.4616 -7.1669 2.6705 16 7 2.8270 -8.5830 2.5320 17 6 1.6888 -9.3754 2.0478 18 6 2.1009 -10.8191 1.9179 19 8 3.2314 -11.1549 2.2013 20 7 1.2129 -11.7372 1.4878 21 6 1.5877 -13.0507 1.3701 22 1 2.5945 -13.3496 1.6216 23 6 0.6724 -13.9973 0.9261 24 7 -0.5526 -13.6334 0.6195 25 14 1.1832 -15.7868 0.7651 26 1 0.9186 -16.4940 2.0438 27 1 0.4047 -16.4276 -0.3252 28 1 2.6321 -15.8615 0.4487 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.6766 1.9564 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 2.9320 -2.2466 0.1985 37 1 1.2539 -2.5433 0.7123 38 1 1.9760 -2.5242 3.0841 39 1 3.6543 -2.2276 2.5708 40 1 3.9865 -3.4409 4.5003 41 1 2.6642 -4.4966 5.0820 42 1 4.5650 -5.4794 6.1813 43 1 5.6425 -5.1714 4.7781 44 1 3.3774 -7.2299 5.0307 45 1 5.0321 -7.4691 4.3795 46 1 1.7018 -7.0617 3.4450 47 1 2.0681 -6.7988 1.7231 48 1 3.6273 -8.6924 1.9273 49 1 0.8632 -9.2950 2.7548 50 1 1.3720 -8.9994 1.0750 51 1 0.3085 -11.4689 1.2622 52 1 -1.1917 -14.2942 0.3100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754606547.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:58 Heat of formation + Delta-G solvation = -151.253974 kcal Electronic energy + Delta-G solvation = -29476.777265 eV Core-core repulsion = 25281.830231 eV Total energy + Delta-G solvation = -4194.947034 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.39571 -40.18179 -39.46945 -38.60831 -36.65196 -35.81311 -34.35889 -33.31013 -32.90492 -31.71607 -30.98898 -28.27371 -28.12523 -26.41736 -25.61295 -24.33297 -23.17039 -22.29325 -21.78600 -21.18690 -20.07343 -19.77368 -18.54698 -17.99696 -17.54902 -17.35510 -16.87101 -16.74095 -16.53862 -16.16430 -16.00058 -15.69911 -15.47624 -15.19666 -14.98612 -14.90141 -14.58247 -14.20419 -14.04367 -13.80171 -13.65821 -13.49094 -13.42795 -13.22358 -13.19605 -13.10417 -12.86776 -12.81358 -12.65593 -12.44912 -12.43629 -12.15513 -12.12859 -11.98986 -11.82972 -11.63031 -11.58172 -11.52589 -11.00033 -10.58860 -10.40167 -10.04501 -9.73752 -9.43123 -8.48477 -5.97904 1.37250 1.40822 1.51407 1.54251 1.72996 2.00953 2.28006 2.66342 2.95387 3.18123 3.44105 3.53827 3.69410 3.77918 3.87404 3.92796 3.98379 4.11544 4.16205 4.23119 4.24654 4.28175 4.30838 4.39494 4.43602 4.47019 4.51208 4.63842 4.69520 4.74126 4.75261 4.76520 4.86950 4.89520 4.92023 4.96615 5.05180 5.05959 5.18359 5.26773 5.32259 5.33448 5.38934 5.43255 5.78780 6.02267 6.20869 6.25583 6.47504 6.56676 7.05696 7.09441 7.52161 8.06861 8.69050 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.001818 C = 0.001642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.806984 B =15398.060129 C =17049.634942 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 C -0.145 4.145 4 O -0.393 6.393 5 C 0.080 3.920 6 C -0.122 4.122 7 C 0.525 3.475 8 O -0.585 6.585 9 N -0.611 5.611 10 C 0.093 3.907 11 C -0.126 4.126 12 C -0.113 4.113 13 C 0.140 3.860 14 H 0.059 0.941 15 C 0.058 3.942 16 N -0.666 5.666 17 C 0.066 3.934 18 C 0.440 3.560 19 O -0.619 6.619 20 N -0.572 5.572 21 C -0.336 4.336 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.921 5.921 25 Si 0.997 3.003 26 H -0.269 1.269 27 H -0.271 1.271 28 H -0.272 1.272 29 H 0.080 0.920 30 H 0.046 0.954 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.085 0.915 35 H 0.064 0.936 36 H 0.046 0.954 37 H 0.043 0.957 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.105 0.895 41 H 0.085 0.915 42 H 0.107 0.893 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.077 0.923 47 H 0.024 0.976 48 H 0.342 0.658 49 H 0.104 0.896 50 H 0.055 0.945 51 H 0.396 0.604 52 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 31.183 6.459 32.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.014 3.986 3 C -0.203 4.203 4 O -0.313 6.313 5 C 0.003 3.997 6 C -0.161 4.161 7 C 0.315 3.685 8 O -0.465 6.465 9 N -0.345 5.345 10 C -0.028 4.028 11 C -0.164 4.164 12 C -0.151 4.151 13 C 0.036 3.964 14 H 0.077 0.923 15 C -0.072 4.072 16 N -0.298 5.298 17 C -0.067 4.067 18 C 0.227 3.773 19 O -0.506 6.506 20 N -0.209 5.209 21 C -0.465 4.465 22 H 0.099 0.901 23 C -0.214 4.214 24 N -0.562 5.562 25 Si 0.820 3.180 26 H -0.194 1.194 27 H -0.195 1.195 28 H -0.197 1.197 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.139 0.861 39 H 0.141 0.859 40 H 0.123 0.877 41 H 0.103 0.897 42 H 0.125 0.875 43 H 0.099 0.901 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.095 0.905 47 H 0.043 0.957 48 H 0.160 0.840 49 H 0.122 0.878 50 H 0.073 0.927 51 H 0.229 0.771 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.664 30.603 6.792 31.693 hybrid contribution -0.631 -1.054 -1.762 2.148 sum 4.034 29.549 5.030 30.245 Atomic orbital electron populations 1.22295 0.95422 1.02074 1.03363 1.22300 0.94246 0.94478 0.87542 1.21860 1.01697 0.93333 1.03366 1.87812 1.86898 1.19693 1.36937 1.22047 0.99624 0.81261 0.96755 1.21395 1.05958 0.89040 0.99700 1.20682 0.75758 0.89578 0.82436 1.90722 1.52674 1.75340 1.27807 1.48635 1.64994 1.09510 1.11361 1.22692 1.00142 0.99984 0.79961 1.22836 0.98802 0.92772 1.01947 1.22540 1.01840 0.98149 0.92545 1.21467 0.95117 0.80195 0.99662 0.92329 1.22275 0.98085 0.86637 1.00221 1.60107 1.06502 1.07484 1.55696 1.21509 0.95067 0.89888 1.00220 1.20705 0.85825 0.88450 0.82291 1.90480 1.21996 1.82260 1.55833 1.41929 1.13235 1.07285 1.58496 1.19709 0.98782 0.84253 1.43791 0.90110 1.26101 0.94850 1.04450 0.95968 1.69684 1.04623 1.36998 1.44883 0.84876 0.78190 0.76548 0.78397 1.19448 1.19539 1.19710 0.90130 0.93458 0.91671 0.92282 0.92124 0.89612 0.91731 0.93557 0.93827 0.86142 0.85860 0.87656 0.89696 0.87466 0.90062 0.90403 0.90336 0.90469 0.95727 0.84012 0.87769 0.92728 0.77065 0.91255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 9.53 71.98 0.69 -1.52 16 2 C 0.07 1.01 3.34 30.60 0.10 1.12 16 3 C -0.15 -1.49 9.56 71.98 0.69 -0.80 16 4 O -0.39 -6.86 9.99 -148.98 -1.49 -8.35 16 5 C 0.08 1.48 5.04 71.98 0.36 1.84 16 6 C -0.12 -1.77 5.00 29.85 0.15 -1.62 16 7 C 0.53 11.64 7.67 87.66 0.67 12.31 16 8 O -0.58 -18.55 14.80 -3.02 -0.04 -18.60 16 9 N -0.61 -11.56 3.06 -788.05 -2.41 -13.98 16 10 C 0.09 0.95 6.74 86.86 0.59 1.54 16 11 C -0.13 -1.32 7.08 31.98 0.23 -1.10 16 12 C -0.11 -2.08 6.24 31.78 0.20 -1.88 16 13 C 0.14 3.25 3.04 45.34 0.14 3.39 16 14 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 15 C 0.06 1.65 5.08 86.30 0.44 2.08 16 16 N -0.67 -22.95 5.91 -517.94 -3.06 -26.01 16 17 C 0.07 2.50 6.16 85.56 0.53 3.02 16 18 C 0.44 21.97 7.82 87.66 0.69 22.65 16 19 O -0.62 -35.29 15.78 -3.08 -0.05 -35.34 16 20 N -0.57 -30.60 5.29 -306.98 -1.62 -32.22 16 21 C -0.34 -19.59 9.68 84.04 0.81 -18.78 16 22 H 0.08 4.99 7.16 -2.91 -0.02 4.96 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.90 13.05 21.66 0.28 -50.62 16 25 Si 1.00 43.69 29.55 68.60 2.03 45.72 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 29 H 0.08 0.76 8.14 -2.38 -0.02 0.74 16 30 H 0.05 0.70 7.87 -2.39 -0.02 0.68 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.06 0.85 7.79 -2.39 -0.02 0.83 16 33 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 34 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.05 0.94 8.04 -2.39 -0.02 0.92 16 37 H 0.04 0.91 7.83 -2.39 -0.02 0.90 16 38 H 0.12 1.31 8.14 -2.39 -0.02 1.30 16 39 H 0.12 1.27 7.95 -2.39 -0.02 1.25 16 40 H 0.11 0.55 7.47 -2.38 -0.02 0.53 16 41 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 0.72 8.14 -2.38 -0.02 0.70 16 43 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.08 1.56 7.80 -2.39 -0.02 1.54 16 45 H 0.08 1.59 8.14 -2.38 -0.02 1.58 16 46 H 0.08 2.07 8.07 -2.39 -0.02 2.05 16 47 H 0.02 0.81 6.60 -2.39 -0.02 0.80 16 48 H 0.34 12.55 8.36 -89.69 -0.75 11.80 16 49 H 0.10 3.57 8.14 -2.39 -0.02 3.55 16 50 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 51 H 0.40 20.22 7.90 -92.71 -0.73 19.48 16 52 H 0.28 14.34 8.31 -92.71 -0.77 13.57 16 Total: -1.00 -74.94 423.22 -0.20 -75.14 By element: Atomic # 1 Polarization: 42.87 SS G_CDS: -0.57 Total: 42.30 kcal Atomic # 6 Polarization: 15.21 SS G_CDS: 6.74 Total: 21.95 kcal Atomic # 7 Polarization: -116.01 SS G_CDS: -6.81 Total: -122.82 kcal Atomic # 8 Polarization: -60.70 SS G_CDS: -1.58 Total: -62.29 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 2.03 Total: 45.72 kcal Total: -74.94 -0.20 -75.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754606547.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.116 kcal (2) G-P(sol) polarization free energy of solvation -74.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds