Wall clock time and date at job start Wed Apr 1 2020 00:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47106 * 2 1 4 4 O 1.42901 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.42895 * 113.99948 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47147 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99507 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.47419 * 125.65021 * 359.69615 * 8 6 5 10 10 C 1.55124 * 104.72460 * 155.81535 * 9 8 6 11 11 H 1.09005 * 110.90854 * 155.27047 * 10 9 8 12 12 C 1.52990 * 111.22620 * 279.17527 * 10 9 8 13 13 C 1.55156 * 101.48615 * 37.29751 * 10 9 8 14 14 H 1.08999 * 110.87618 * 82.76291 * 13 10 9 15 15 C 1.53001 * 110.72335 * 205.96949 * 13 10 9 16 16 N 1.46896 * 109.47274 * 179.97438 * 15 13 10 17 17 C 1.46908 * 110.99906 * 180.02562 * 16 15 13 18 18 C 1.50693 * 109.47108 * 180.02562 * 17 16 15 19 19 O 1.21299 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00041 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00145 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99837 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00175 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99708 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00247 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47156 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.47241 * 120.00109 * 25 23 21 28 28 H 1.48497 * 109.47560 * 240.00008 * 25 23 21 29 29 C 1.47025 * 125.64574 * 180.02562 * 8 6 5 30 30 H 1.08999 * 109.47466 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47107 * 300.00507 * 1 2 3 32 32 H 1.09003 * 109.47206 * 59.99956 * 1 2 3 33 33 H 1.08991 * 109.46861 * 240.00084 * 2 1 3 34 34 H 1.08999 * 109.46719 * 119.99997 * 2 1 3 35 35 H 1.08995 * 109.47456 * 59.99578 * 3 2 1 36 36 H 1.09003 * 109.47124 * 300.00094 * 3 2 1 37 37 H 1.09001 * 109.46798 * 60.00190 * 5 4 3 38 38 H 1.09000 * 109.47736 * 300.00432 * 5 4 3 39 39 H 1.09006 * 110.36824 * 274.74806 * 9 8 6 40 40 H 1.08998 * 110.37021 * 37.06511 * 9 8 6 41 41 H 1.09003 * 109.47123 * 172.20367 * 12 10 9 42 42 H 1.08998 * 109.47607 * 292.20279 * 12 10 9 43 43 H 1.09005 * 109.47510 * 52.20911 * 12 10 9 44 44 H 1.09000 * 109.46917 * 299.97537 * 15 13 10 45 45 H 1.09007 * 109.46644 * 59.97140 * 15 13 10 46 46 H 1.00894 * 110.99931 * 56.05048 * 16 15 13 47 47 H 1.09000 * 109.46560 * 300.00160 * 17 16 15 48 48 H 1.09000 * 109.47155 * 60.00278 * 17 16 15 49 49 H 0.97001 * 119.99865 * 0.02562 * 20 18 17 50 50 H 0.97008 * 119.99669 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.88278 * 300.44110 * 29 8 6 52 52 H 1.09004 * 109.87918 * 61.45412 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7479 -0.0012 6 6 5.5526 2.6289 -0.0012 7 8 6.0741 1.5340 -0.0012 8 7 6.3165 3.7393 -0.0012 9 6 5.8166 5.1261 -0.0076 10 6 6.9678 5.9630 0.6095 11 1 6.9177 6.9993 0.2754 12 6 6.9546 5.8812 2.1372 13 6 8.2158 5.2501 0.0251 14 1 8.4310 5.6071 -0.9821 15 6 9.4282 5.4463 0.9374 16 7 10.5920 4.7610 0.3595 17 6 11.7775 4.9277 1.2109 18 6 12.9485 4.2134 0.5869 19 8 12.8094 3.6239 -0.4640 20 7 14.1507 4.2305 1.1960 21 6 15.2160 3.5802 0.6286 22 1 15.0919 3.0546 -0.3067 23 6 16.4552 3.5974 1.2567 24 7 16.6060 4.2366 2.3950 25 14 17.9068 2.7120 0.4833 26 1 17.4779 2.0747 -0.7877 27 1 18.9912 3.6879 0.2058 28 1 18.4055 1.6700 1.4164 29 6 7.7865 3.7679 -0.0017 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 3.7290 3.2890 0.8888 38 1 3.7282 3.2887 -0.8912 39 1 5.6129 5.4512 -1.0279 40 1 4.9182 5.2084 0.6041 41 1 7.8492 6.3609 2.5344 42 1 6.0696 6.3887 2.5207 43 1 6.9360 4.8357 2.4450 44 1 9.6433 6.5107 1.0319 45 1 9.2133 5.0302 1.9217 46 1 10.7723 5.0839 -0.5792 47 1 12.0089 5.9885 1.3077 48 1 11.5787 4.5077 2.1969 49 1 14.2620 4.7023 2.0362 50 1 17.4713 4.2489 2.8333 51 1 8.1676 3.2557 0.8818 52 1 8.1663 3.2856 -0.9024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754811541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:52 Heat of formation + Delta-G solvation = -123.471485 kcal Electronic energy + Delta-G solvation = -29340.806984 eV Core-core repulsion = 25147.064689 eV Total energy + Delta-G solvation = -4193.742295 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.53240 -38.87365 -38.20272 -37.60687 -35.37830 -34.06903 -33.85495 -32.89048 -31.21516 -30.52534 -28.92717 -27.07203 -26.93288 -25.93231 -24.71902 -23.48324 -22.27206 -21.94967 -19.83448 -19.58938 -19.08522 -17.86562 -17.59292 -17.10454 -16.77601 -16.24875 -15.99554 -15.69226 -15.54559 -15.04634 -14.75283 -14.52019 -14.34017 -14.09674 -13.97069 -13.69082 -13.52515 -13.33656 -13.02024 -12.74558 -12.64374 -12.50255 -12.42000 -12.35335 -12.17328 -12.15138 -11.75260 -11.55152 -11.48625 -11.34711 -11.29758 -11.07550 -10.99072 -10.87874 -10.70540 -10.32062 -10.20006 -10.08585 -9.89449 -9.49621 -8.79629 -8.44466 -8.04889 -7.93499 -6.39693 -3.80247 2.42970 2.45335 3.18403 3.28937 3.36574 3.48641 3.92190 3.96654 4.11965 4.17925 4.32346 4.48023 4.51748 4.60849 4.67452 4.71450 4.80862 4.87866 4.88758 5.01214 5.03974 5.05609 5.09064 5.13736 5.20230 5.25668 5.28557 5.28805 5.45417 5.54360 5.57350 5.58963 5.69322 5.70608 5.77734 5.79664 5.82248 5.91149 5.98815 6.03656 6.08360 6.17200 6.28579 6.70074 7.19661 7.30306 7.57786 7.65456 8.02421 8.09037 8.63665 9.20477 9.56764 10.08309 10.78177 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017411 B = 0.001677 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.764123 B =16693.837459 C =17834.034481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.051 3.949 6 C 0.525 3.475 7 O -0.513 6.513 8 N -0.620 5.620 9 C 0.100 3.900 10 C -0.099 4.099 11 H 0.092 0.908 12 C -0.147 4.147 13 C -0.091 4.091 14 H 0.087 0.913 15 C 0.068 3.932 16 N -0.669 5.669 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.582 6.582 20 N -0.564 5.564 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 C 0.125 3.875 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.056 0.944 43 H 0.059 0.941 44 H 0.033 0.967 45 H 0.077 0.923 46 H 0.349 0.651 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.270 0.730 51 H 0.077 0.923 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.274 6.422 -0.686 31.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.282 6.282 5 C -0.029 4.029 6 C 0.312 3.688 7 O -0.387 6.387 8 N -0.357 5.357 9 C -0.023 4.023 10 C -0.118 4.118 11 H 0.111 0.889 12 C -0.204 4.204 13 C -0.111 4.111 14 H 0.105 0.895 15 C -0.062 4.062 16 N -0.302 5.302 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 C 0.003 3.997 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.051 0.949 45 H 0.096 0.904 46 H 0.168 0.832 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.095 0.905 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -31.012 4.550 -1.015 31.361 hybrid contribution 0.933 1.229 0.077 1.545 sum -30.079 5.780 -0.939 30.644 Atomic orbital electron populations 1.21697 0.94640 1.02377 1.01931 1.21456 0.95591 0.95360 1.03824 1.22637 0.80448 0.98389 1.00166 1.88022 1.19575 1.25233 1.95398 1.22142 0.91620 0.86840 1.02258 1.19835 0.88172 0.83418 0.77348 1.90779 1.74375 1.25730 1.47838 1.48472 1.07829 1.05401 1.73970 1.22494 0.97522 0.81441 1.00825 1.22395 0.93812 0.99211 0.96420 0.88947 1.21813 1.02154 1.02531 0.93900 1.22264 0.94136 0.94549 1.00139 0.89516 1.22037 0.89779 0.96209 0.98197 1.60062 1.03302 1.60944 1.05876 1.21656 0.90445 0.98408 0.97572 1.19819 0.83951 0.86266 0.87361 1.90533 1.83947 1.47868 1.24234 1.41868 1.07780 1.47542 1.22933 1.19764 0.87130 1.28834 1.07054 0.87863 1.25252 0.99025 0.97707 0.95970 1.69623 1.25476 1.42775 1.16516 0.85804 0.80505 0.78873 0.79189 1.19204 1.20808 1.20745 1.21914 0.77660 0.96470 1.03607 0.91897 0.92545 0.92541 0.90884 0.90882 0.93189 0.93195 0.90490 0.90471 0.91008 0.90651 0.91554 0.92522 0.92169 0.94935 0.90421 0.83168 0.93908 0.89633 0.77493 0.91968 0.90497 0.90781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.12 -0.87 6.30 -26.73 -0.17 -1.04 16 3 C 0.06 0.44 5.94 37.16 0.22 0.66 16 4 O -0.36 -4.15 9.88 -55.14 -0.54 -4.69 16 5 C 0.05 0.46 5.42 36.01 0.20 0.65 16 6 C 0.53 6.79 7.93 -10.98 -0.09 6.71 16 7 O -0.51 -9.40 16.83 -14.35 -0.24 -9.64 16 8 N -0.62 -6.59 3.31 -170.38 -0.56 -7.15 16 9 C 0.10 0.65 6.17 -2.42 -0.01 0.63 16 10 C -0.10 -0.65 3.53 -88.36 -0.31 -0.96 16 11 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 12 C -0.15 -0.99 8.15 37.15 0.30 -0.68 16 13 C -0.09 -0.86 2.99 -88.78 -0.27 -1.13 16 14 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 15 C 0.07 0.75 3.94 -3.83 -0.02 0.73 16 16 N -0.67 -10.41 5.94 -115.05 -0.68 -11.09 16 17 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 18 C 0.44 10.48 7.82 -10.99 -0.09 10.40 16 19 O -0.58 -16.01 15.78 5.54 0.09 -15.92 16 20 N -0.56 -14.44 5.29 -10.96 -0.06 -14.50 16 21 C -0.30 -8.43 9.68 -14.93 -0.14 -8.58 16 22 H 0.10 3.08 7.16 -52.48 -0.38 2.70 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.75 13.05 55.50 0.72 -24.02 16 25 Si 0.93 21.33 29.55 -169.99 -5.02 16.31 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 C 0.13 1.54 5.97 -3.06 -0.02 1.52 16 30 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 37 H 0.08 0.49 7.85 -51.93 -0.41 0.08 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.34 7.40 -51.93 -0.38 -0.05 16 41 H 0.07 0.45 6.76 -51.93 -0.35 0.10 16 42 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.06 0.51 7.91 -51.93 -0.41 0.10 16 44 H 0.03 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.08 0.86 6.67 -51.93 -0.35 0.52 16 46 H 0.35 5.58 8.43 -39.30 -0.33 5.24 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 49 H 0.39 9.55 7.90 -40.82 -0.32 9.23 16 50 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 51 H 0.08 1.12 7.77 -51.93 -0.40 0.71 16 52 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 422.79 15.07 6.37 6.37 Total: -1.00 -35.92 422.79 -9.32 -45.23 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -9.23 Total: 9.16 kcal Atomic # 6 Polarization: 10.09 SS G_CDS: -0.15 Total: 9.94 kcal Atomic # 7 Polarization: -56.19 SS G_CDS: -0.58 Total: -56.77 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.70 Total: -30.25 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -35.92 -9.32 -45.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754811541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.239 kcal (2) G-P(sol) polarization free energy of solvation -35.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds