Wall clock time and date at job start Wed Apr 1 2020 00:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53001 * 109.47106 * 2 1 4 4 O 1.42901 * 109.47084 * 180.02562 * 3 2 1 5 5 C 1.42895 * 113.99948 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.47147 * 179.97438 * 5 4 3 7 7 O 1.21279 * 119.99507 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00020 * 180.02562 * 6 5 4 9 9 C 1.47419 * 125.65021 * 359.69615 * 8 6 5 10 10 C 1.55124 * 104.72460 * 155.81535 * 9 8 6 11 11 H 1.09005 * 110.90854 * 155.27047 * 10 9 8 12 12 C 1.52990 * 111.22620 * 279.17527 * 10 9 8 13 13 C 1.55156 * 101.48615 * 37.29751 * 10 9 8 14 14 H 1.08999 * 110.87618 * 82.76291 * 13 10 9 15 15 C 1.53001 * 110.72335 * 205.96949 * 13 10 9 16 16 N 1.46896 * 109.47274 * 179.97438 * 15 13 10 17 17 C 1.46908 * 110.99906 * 180.02562 * 16 15 13 18 18 C 1.50693 * 109.47108 * 180.02562 * 17 16 15 19 19 O 1.21299 * 120.00053 * 0.02562 * 18 17 16 20 20 N 1.34777 * 120.00041 * 179.97438 * 18 17 16 21 21 C 1.37102 * 120.00145 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99837 * 0.02562 * 21 20 18 23 23 C 1.38945 * 120.00175 * 180.02562 * 21 20 18 24 24 N 1.31409 * 119.99708 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00247 * 180.02562 * 23 21 20 26 26 H 1.48507 * 109.47156 * 0.02562 * 25 23 21 27 27 H 1.48508 * 109.47241 * 120.00109 * 25 23 21 28 28 H 1.48497 * 109.47560 * 240.00008 * 25 23 21 29 29 C 1.47025 * 125.64574 * 180.02562 * 8 6 5 30 30 H 1.08999 * 109.47466 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47107 * 300.00507 * 1 2 3 32 32 H 1.09003 * 109.47206 * 59.99956 * 1 2 3 33 33 H 1.08991 * 109.46861 * 240.00084 * 2 1 3 34 34 H 1.08999 * 109.46719 * 119.99997 * 2 1 3 35 35 H 1.08995 * 109.47456 * 59.99578 * 3 2 1 36 36 H 1.09003 * 109.47124 * 300.00094 * 3 2 1 37 37 H 1.09001 * 109.46798 * 60.00190 * 5 4 3 38 38 H 1.09000 * 109.47736 * 300.00432 * 5 4 3 39 39 H 1.09006 * 110.36824 * 274.74806 * 9 8 6 40 40 H 1.08998 * 110.37021 * 37.06511 * 9 8 6 41 41 H 1.09003 * 109.47123 * 172.20367 * 12 10 9 42 42 H 1.08998 * 109.47607 * 292.20279 * 12 10 9 43 43 H 1.09005 * 109.47510 * 52.20911 * 12 10 9 44 44 H 1.09000 * 109.46917 * 299.97537 * 15 13 10 45 45 H 1.09007 * 109.46644 * 59.97140 * 15 13 10 46 46 H 1.00894 * 110.99931 * 56.05048 * 16 15 13 47 47 H 1.09000 * 109.46560 * 300.00160 * 17 16 15 48 48 H 1.09000 * 109.47155 * 60.00278 * 17 16 15 49 49 H 0.97001 * 119.99865 * 0.02562 * 20 18 17 50 50 H 0.97008 * 119.99669 * 180.02562 * 24 23 21 51 51 H 1.09000 * 109.88278 * 300.44110 * 29 8 6 52 52 H 1.09004 * 109.87918 * 61.45412 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0502 2.7479 -0.0012 6 6 5.5526 2.6289 -0.0012 7 8 6.0741 1.5340 -0.0012 8 7 6.3165 3.7393 -0.0012 9 6 5.8166 5.1261 -0.0076 10 6 6.9678 5.9630 0.6095 11 1 6.9177 6.9993 0.2754 12 6 6.9546 5.8812 2.1372 13 6 8.2158 5.2501 0.0251 14 1 8.4310 5.6071 -0.9821 15 6 9.4282 5.4463 0.9374 16 7 10.5920 4.7610 0.3595 17 6 11.7775 4.9277 1.2109 18 6 12.9485 4.2134 0.5869 19 8 12.8094 3.6239 -0.4640 20 7 14.1507 4.2305 1.1960 21 6 15.2160 3.5802 0.6286 22 1 15.0919 3.0546 -0.3067 23 6 16.4552 3.5974 1.2567 24 7 16.6060 4.2366 2.3950 25 14 17.9068 2.7120 0.4833 26 1 17.4779 2.0747 -0.7877 27 1 18.9912 3.6879 0.2058 28 1 18.4055 1.6700 1.4164 29 6 7.7865 3.7679 -0.0017 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 1.6767 1.9564 0.8899 36 1 1.6767 1.9564 -0.8900 37 1 3.7290 3.2890 0.8888 38 1 3.7282 3.2887 -0.8912 39 1 5.6129 5.4512 -1.0279 40 1 4.9182 5.2084 0.6041 41 1 7.8492 6.3609 2.5344 42 1 6.0696 6.3887 2.5207 43 1 6.9360 4.8357 2.4450 44 1 9.6433 6.5107 1.0319 45 1 9.2133 5.0302 1.9217 46 1 10.7723 5.0839 -0.5792 47 1 12.0089 5.9885 1.3077 48 1 11.5787 4.5077 2.1969 49 1 14.2620 4.7023 2.0362 50 1 17.4713 4.2489 2.8333 51 1 8.1676 3.2557 0.8818 52 1 8.1663 3.2856 -0.9024 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754811541.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:51 Heat of formation + Delta-G solvation = -150.379534 kcal Electronic energy + Delta-G solvation = -29341.973805 eV Core-core repulsion = 25147.064689 eV Total energy + Delta-G solvation = -4194.909116 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.38454 -40.17887 -39.54367 -38.49171 -36.65361 -35.82765 -34.60400 -33.81854 -33.25764 -31.39342 -29.81884 -28.21505 -27.63869 -26.79333 -26.10241 -24.74545 -23.09853 -22.47189 -21.20451 -20.46932 -20.33149 -19.86741 -18.41294 -17.85034 -17.78000 -17.46298 -16.91884 -16.86226 -16.54667 -16.43104 -16.01730 -15.83550 -15.41812 -15.27837 -14.99562 -14.74724 -14.57145 -14.21505 -14.13319 -13.91048 -13.53909 -13.44108 -13.27340 -13.08695 -13.03306 -12.99726 -12.89326 -12.87301 -12.85373 -12.55171 -12.41827 -12.13068 -11.84921 -11.80683 -11.71685 -11.57763 -11.52726 -11.44122 -10.90339 -10.69698 -10.35583 -10.02271 -9.70651 -9.27910 -8.48054 -5.96655 1.35367 1.40645 1.50784 1.54923 1.65646 2.04520 2.28350 2.84731 2.91116 3.19362 3.38087 3.49321 3.60927 3.75915 3.91188 4.02301 4.06649 4.17322 4.20878 4.24150 4.29554 4.32958 4.40813 4.42725 4.52393 4.55373 4.56910 4.62808 4.64382 4.66976 4.71589 4.78297 4.83651 4.89205 4.96841 5.10357 5.16117 5.21157 5.22194 5.22284 5.28490 5.35576 5.40040 5.51323 5.88950 6.10406 6.11221 6.43714 6.48385 6.59388 7.09490 7.11888 7.55390 8.11269 8.69580 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017411 B = 0.001677 C = 0.001570 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.764123 B =16693.837459 C =17834.034481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.057 3.943 4 O -0.407 6.407 5 C 0.058 3.942 6 C 0.513 3.487 7 O -0.587 6.587 8 N -0.615 5.615 9 C 0.094 3.906 10 C -0.087 4.087 11 H 0.126 0.874 12 C -0.147 4.147 13 C -0.084 4.084 14 H 0.094 0.906 15 C 0.071 3.929 16 N -0.690 5.690 17 C 0.068 3.932 18 C 0.435 3.565 19 O -0.625 6.625 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.275 1.275 27 H -0.268 1.268 28 H -0.271 1.271 29 C 0.125 3.875 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.059 0.941 45 H 0.076 0.924 46 H 0.345 0.655 47 H 0.072 0.928 48 H 0.099 0.901 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.044 0.956 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.441 9.431 -0.163 34.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.166 4.166 3 C -0.019 4.019 4 O -0.326 6.326 5 C -0.021 4.021 6 C 0.302 3.698 7 O -0.466 6.466 8 N -0.349 5.349 9 C -0.026 4.026 10 C -0.106 4.106 11 H 0.144 0.856 12 C -0.204 4.204 13 C -0.103 4.103 14 H 0.113 0.887 15 C -0.058 4.058 16 N -0.323 5.323 17 C -0.064 4.064 18 C 0.223 3.777 19 O -0.512 6.512 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.095 0.905 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.200 1.200 27 H -0.193 1.193 28 H -0.197 1.197 29 C 0.003 3.997 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.128 0.872 38 H 0.128 0.872 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.084 0.916 42 H 0.098 0.902 43 H 0.054 0.946 44 H 0.077 0.923 45 H 0.094 0.906 46 H 0.164 0.836 47 H 0.090 0.910 48 H 0.117 0.883 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.063 0.937 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -33.215 7.639 -0.459 34.085 hybrid contribution 1.571 0.299 -0.079 1.601 sum -31.644 7.937 -0.538 32.629 Atomic orbital electron populations 1.21660 0.92670 1.02844 1.02856 1.21504 0.97266 0.95465 1.02407 1.22835 0.78558 0.98582 1.01936 1.87984 1.21846 1.26990 1.95794 1.22261 0.88084 0.86563 1.05218 1.20808 0.90221 0.82795 0.75972 1.90736 1.75941 1.28546 1.51401 1.48571 1.06967 1.07062 1.72328 1.22887 0.98470 0.78374 1.02918 1.22447 0.91550 1.00475 0.96125 0.85645 1.21824 1.03318 1.01210 0.94054 1.22231 0.94904 0.92550 1.00636 0.88741 1.22116 0.88410 0.97100 0.98137 1.60046 1.03783 1.62771 1.05685 1.21495 0.88434 0.99007 0.97510 1.20981 0.84871 0.85237 0.86616 1.90500 1.84800 1.49582 1.26270 1.41930 1.08074 1.47808 1.23222 1.19699 0.88965 1.30684 1.07131 0.90541 1.26014 1.00882 0.97938 0.96291 1.69675 1.26471 1.42884 1.16995 0.84883 0.77373 0.78078 0.78063 1.20010 1.19309 1.19663 1.21747 0.79285 0.98341 1.00372 0.91741 0.91567 0.91579 0.92372 0.92351 0.91265 0.91314 0.87160 0.87220 0.88774 0.87529 0.91567 0.90230 0.94645 0.92331 0.90581 0.83643 0.91027 0.88267 0.76925 0.91274 0.93731 0.94201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.91 71.98 0.71 -0.45 16 2 C -0.13 -1.78 6.30 30.60 0.19 -1.59 16 3 C 0.06 0.74 5.94 71.98 0.43 1.17 16 4 O -0.41 -9.12 9.88 -129.94 -1.28 -10.41 16 5 C 0.06 0.92 5.42 71.24 0.39 1.31 16 6 C 0.51 13.50 7.93 87.66 0.69 14.19 16 7 O -0.59 -23.24 16.83 16.01 0.27 -22.97 16 8 N -0.61 -12.76 3.31 -811.34 -2.69 -15.44 16 9 C 0.09 0.87 6.17 86.93 0.54 1.40 16 10 C -0.09 -0.81 3.53 -9.33 -0.03 -0.84 16 11 H 0.13 0.50 8.14 -2.38 -0.02 0.48 16 12 C -0.15 -1.51 8.15 71.98 0.59 -0.93 16 13 C -0.08 -1.45 2.99 -9.60 -0.03 -1.48 16 14 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 15 C 0.07 1.46 3.94 86.30 0.34 1.80 16 16 N -0.69 -21.44 5.94 -517.92 -3.07 -24.52 16 17 C 0.07 2.32 6.17 85.55 0.53 2.85 16 18 C 0.44 21.24 7.82 87.65 0.69 21.93 16 19 O -0.62 -35.85 15.78 -3.09 -0.05 -35.90 16 20 N -0.57 -30.04 5.29 -306.98 -1.62 -31.66 16 21 C -0.34 -19.53 9.68 84.04 0.81 -18.72 16 22 H 0.08 4.79 7.16 -2.91 -0.02 4.76 16 23 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 24 N -0.92 -50.18 13.05 21.66 0.28 -49.89 16 25 Si 0.99 43.90 29.55 68.60 2.03 45.92 16 26 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 29 C 0.13 3.25 5.97 86.73 0.52 3.77 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 32 H 0.07 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.11 1.00 7.85 -2.39 -0.02 0.98 16 38 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.09 0.54 8.14 -2.38 -0.02 0.52 16 40 H 0.11 0.39 7.40 -2.39 -0.02 0.37 16 41 H 0.07 0.70 6.76 -2.39 -0.02 0.68 16 42 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.03 0.55 7.91 -2.38 -0.02 0.53 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.08 1.61 6.67 -2.38 -0.02 1.59 16 46 H 0.34 11.11 8.43 -89.70 -0.76 10.36 16 47 H 0.07 2.06 8.14 -2.39 -0.02 2.05 16 48 H 0.10 3.15 8.14 -2.39 -0.02 3.13 16 49 H 0.40 19.60 7.90 -92.71 -0.73 18.87 16 50 H 0.28 14.13 8.31 -92.70 -0.77 13.36 16 51 H 0.04 1.42 7.77 -2.39 -0.02 1.40 16 52 H 0.04 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -85.18 422.79 0.12 -85.07 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.58 Total: 35.55 kcal Atomic # 6 Polarization: 17.42 SS G_CDS: 6.83 Total: 24.25 kcal Atomic # 7 Polarization: -114.41 SS G_CDS: -7.10 Total: -121.51 kcal Atomic # 8 Polarization: -68.21 SS G_CDS: -1.06 Total: -69.27 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.03 Total: 45.92 kcal Total: -85.18 0.12 -85.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754811541.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.311 kcal (2) G-P(sol) polarization free energy of solvation -85.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds