Wall clock time and date at job start Wed Apr 1 2020 00:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46860 * 2 1 4 4 O 1.42895 * 109.46975 * 180.02562 * 3 2 1 5 5 C 1.42900 * 114.00275 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47571 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99676 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99834 * 180.02562 * 6 5 4 9 9 C 1.48115 * 127.03911 * 359.95934 * 8 6 5 10 10 C 1.54939 * 103.25748 * 140.74103 * 9 8 6 11 11 H 1.08992 * 110.74039 * 279.03869 * 10 9 8 12 12 C 1.53005 * 110.73816 * 155.71361 * 10 9 8 13 13 C 1.54616 * 102.83928 * 37.37983 * 10 9 8 14 14 H 1.09002 * 110.41591 * 97.08369 * 13 10 9 15 15 C 1.52993 * 110.32628 * 219.26007 * 13 10 9 16 16 N 1.46901 * 109.46977 * 182.07322 * 15 13 10 17 17 C 1.46902 * 110.99844 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00042 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00013 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99593 * 25 23 21 27 27 H 1.48494 * 109.47201 * 209.99761 * 25 23 21 28 28 H 1.48498 * 109.47011 * 329.99735 * 25 23 21 29 29 C 1.47489 * 127.03109 * 179.97438 * 8 6 5 30 30 H 1.09005 * 109.47177 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47259 * 300.00110 * 1 2 3 32 32 H 1.08996 * 109.47412 * 60.00274 * 1 2 3 33 33 H 1.08996 * 109.47259 * 239.99890 * 2 1 3 34 34 H 1.08996 * 109.47412 * 119.99726 * 2 1 3 35 35 H 1.08996 * 109.47274 * 59.99899 * 3 2 1 36 36 H 1.09002 * 109.46700 * 299.99664 * 3 2 1 37 37 H 1.09000 * 109.46731 * 59.99382 * 5 4 3 38 38 H 1.09000 * 109.47078 * 300.00381 * 5 4 3 39 39 H 1.09000 * 110.66265 * 259.18789 * 9 8 6 40 40 H 1.09004 * 110.66147 * 22.29468 * 9 8 6 41 41 H 1.09004 * 109.47041 * 306.58738 * 12 10 9 42 42 H 1.09001 * 109.47211 * 66.58056 * 12 10 9 43 43 H 1.09002 * 109.47132 * 186.58447 * 12 10 9 44 44 H 1.08997 * 109.47854 * 62.07211 * 15 13 10 45 45 H 1.09005 * 109.47140 * 302.07092 * 15 13 10 46 46 H 1.00902 * 111.00235 * 56.04818 * 16 15 13 47 47 H 1.09004 * 109.47131 * 60.00016 * 17 16 15 48 48 H 1.09000 * 109.47732 * 300.00127 * 17 16 15 49 49 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 50 50 H 0.97005 * 120.00014 * 180.02562 * 24 23 21 51 51 H 1.09002 * 109.91275 * 86.05244 * 29 8 6 52 52 H 1.08998 * 110.07149 * 324.86486 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0502 2.7481 -0.0012 6 6 5.5525 2.6291 -0.0012 7 8 6.0740 1.5342 -0.0002 8 7 6.3163 3.7395 -0.0012 9 6 5.8479 5.1446 -0.0021 10 6 6.8427 5.8514 0.9525 11 1 6.5620 5.6875 1.9929 12 6 6.9231 7.3472 0.6407 13 6 8.1836 5.1522 0.6305 14 1 8.7623 5.7468 -0.0763 15 6 8.9855 4.9240 1.9133 16 7 10.2754 4.3046 1.5808 17 6 11.0745 4.0707 2.7910 18 6 12.3872 3.4353 2.4111 19 8 12.6330 3.2009 1.2467 20 7 13.2905 3.1331 3.3646 21 6 14.4871 2.5603 3.0185 22 1 14.7059 2.3516 1.9817 23 6 15.4181 2.2482 4.0015 24 7 16.5652 1.6996 3.6696 25 14 15.0393 2.6085 5.7948 26 1 14.3696 1.4321 6.4054 27 1 16.3036 2.8905 6.5209 28 1 14.1434 3.7895 5.8839 29 6 7.7898 3.8040 -0.0007 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.7288 3.2892 0.8887 38 1 3.7281 3.2887 -0.8912 39 1 5.9083 5.5696 -1.0040 40 1 4.8307 5.2112 0.3842 41 1 7.1473 7.4863 -0.4169 42 1 5.9687 7.8190 0.8747 43 1 7.7104 7.8019 1.2419 44 1 8.4271 4.2655 2.5787 45 1 9.1582 5.8795 2.4087 46 1 10.7847 4.8655 0.9144 47 1 10.5307 3.4064 3.4627 48 1 11.2617 5.0204 3.2922 49 1 13.0941 3.3208 4.2958 50 1 17.2150 1.4814 4.3560 51 1 8.1641 3.7495 -1.0229 52 1 8.1999 2.9841 0.5889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754811543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:59 Heat of formation + Delta-G solvation = -117.073947 kcal Electronic energy + Delta-G solvation = -29375.356799 eV Core-core repulsion = 25181.891922 eV Total energy + Delta-G solvation = -4193.464877 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.44747 -38.86355 -38.36115 -37.60971 -35.44111 -34.07364 -33.89272 -33.10054 -31.64760 -30.84080 -28.97778 -27.06125 -26.70119 -25.96433 -24.76126 -23.47156 -22.01729 -21.76847 -20.42349 -19.60508 -19.32352 -18.30645 -17.58193 -17.00528 -16.73865 -16.32550 -16.03873 -15.74164 -15.54633 -15.10582 -14.81530 -14.58028 -14.29902 -14.17754 -13.97355 -13.81333 -13.40499 -13.24348 -13.11058 -12.96686 -12.62372 -12.59201 -12.50414 -12.41726 -12.25260 -12.03002 -11.98720 -11.84650 -11.67108 -11.35453 -11.30000 -11.18058 -11.05659 -10.93994 -10.79268 -10.57562 -10.09890 -9.95037 -9.91382 -9.54632 -8.88763 -8.56991 -8.17304 -8.12399 -6.28439 -3.79778 2.38841 2.42994 3.03898 3.09182 3.16754 3.45904 3.76865 3.92829 4.12444 4.12968 4.20115 4.46629 4.51222 4.54770 4.61267 4.69636 4.77688 4.87361 4.90482 4.93993 4.97816 4.99105 5.02629 5.03974 5.13437 5.23261 5.25473 5.28409 5.31050 5.48789 5.54684 5.57362 5.63202 5.66062 5.70406 5.75987 5.79363 5.81630 5.82484 5.88887 5.96133 6.05776 6.20895 6.69054 7.07513 7.30421 7.57115 7.61037 8.00285 8.17448 8.62536 8.97815 9.45223 9.85637 10.84743 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.001874 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.073480 B =14934.755883 C =16314.613211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.060 3.940 4 O -0.364 6.364 5 C 0.052 3.948 6 C 0.529 3.471 7 O -0.512 6.512 8 N -0.624 5.624 9 C 0.101 3.899 10 C -0.102 4.102 11 H 0.085 0.915 12 C -0.142 4.142 13 C -0.093 4.093 14 H 0.089 0.911 15 C 0.068 3.932 16 N -0.668 5.668 17 C 0.049 3.951 18 C 0.450 3.550 19 O -0.563 6.563 20 N -0.591 5.591 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.880 3.120 26 H -0.270 1.270 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.118 3.882 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.060 0.940 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.072 0.928 45 H 0.031 0.969 46 H 0.351 0.649 47 H 0.087 0.913 48 H 0.044 0.956 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.068 0.932 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.876 11.498 -3.938 35.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.016 4.016 4 O -0.282 6.282 5 C -0.028 4.028 6 C 0.316 3.684 7 O -0.385 6.385 8 N -0.361 5.361 9 C -0.022 4.022 10 C -0.121 4.121 11 H 0.104 0.896 12 C -0.200 4.200 13 C -0.113 4.113 14 H 0.107 0.893 15 C -0.062 4.062 16 N -0.301 5.301 17 C -0.084 4.084 18 C 0.236 3.764 19 O -0.445 6.445 20 N -0.231 5.231 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.707 3.293 26 H -0.196 1.196 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.004 4.004 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.068 0.932 36 H 0.068 0.932 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.049 0.951 46 H 0.170 0.830 47 H 0.105 0.895 48 H 0.062 0.938 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -32.408 9.702 -4.690 34.153 hybrid contribution 0.028 1.507 1.786 2.337 sum -32.380 11.209 -2.905 34.388 Atomic orbital electron populations 1.21694 0.94634 1.02392 1.01923 1.21459 0.95595 0.95343 1.03853 1.22641 0.80413 0.98418 1.00162 1.88025 1.19603 1.25179 1.95395 1.22129 0.91563 0.86893 1.02263 1.19811 0.88121 0.83283 0.77150 1.90788 1.74320 1.25637 1.47777 1.48760 1.07994 1.05361 1.73999 1.22676 0.98338 0.81162 1.00010 1.22320 0.94584 0.95229 1.00003 0.89636 1.21755 1.02135 0.93959 1.02105 1.22176 0.95464 0.95809 0.97819 0.89318 1.22030 0.91170 0.97191 0.95824 1.60048 1.04275 1.53094 1.12686 1.21693 0.94289 0.99607 0.92798 1.19706 0.85410 0.84820 0.86480 1.90569 1.78540 1.56922 1.18478 1.42205 1.16667 1.56754 1.07448 1.19439 0.90448 1.35901 0.97564 0.86275 1.25032 0.95438 0.97280 0.98403 1.69625 1.06999 1.41559 1.33986 0.86666 0.78631 0.78843 0.85199 1.19591 1.20214 1.19582 1.22064 0.78112 0.98646 1.01590 0.91883 0.92542 0.92549 0.90875 0.90855 0.93176 0.93194 0.90469 0.90469 0.90501 0.90398 0.92136 0.92338 0.91942 0.90938 0.95086 0.82981 0.89524 0.93789 0.79721 0.91642 0.91392 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.91 37.16 0.37 -0.35 16 2 C -0.12 -0.88 6.30 -26.73 -0.17 -1.05 16 3 C 0.06 0.44 5.94 37.16 0.22 0.66 16 4 O -0.36 -4.13 9.88 -55.14 -0.54 -4.68 16 5 C 0.05 0.45 5.35 36.01 0.19 0.65 16 6 C 0.53 6.80 7.97 -10.99 -0.09 6.71 16 7 O -0.51 -9.37 16.84 -14.35 -0.24 -9.61 16 8 N -0.62 -6.52 3.29 -169.77 -0.56 -7.08 16 9 C 0.10 0.62 6.39 -2.13 -0.01 0.61 16 10 C -0.10 -0.64 3.21 -88.74 -0.28 -0.93 16 11 H 0.09 0.55 7.86 -51.93 -0.41 0.14 16 12 C -0.14 -0.68 9.16 37.16 0.34 -0.34 16 13 C -0.09 -0.84 2.76 -89.26 -0.25 -1.09 16 14 H 0.09 0.76 7.85 -51.93 -0.41 0.35 16 15 C 0.07 0.73 4.76 -3.83 -0.02 0.72 16 16 N -0.67 -10.07 5.81 -115.06 -0.67 -10.74 16 17 C 0.05 0.81 6.17 -4.97 -0.03 0.78 16 18 C 0.45 10.37 7.82 -10.98 -0.09 10.28 16 19 O -0.56 -15.35 15.78 5.55 0.09 -15.26 16 20 N -0.59 -14.33 5.09 -10.96 -0.06 -14.38 16 21 C -0.30 -8.78 10.16 -14.93 -0.15 -8.93 16 22 H 0.12 3.92 7.39 -52.49 -0.39 3.53 16 23 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 24 N -0.88 -26.11 13.96 55.50 0.77 -25.33 16 25 Si 0.88 19.65 27.74 -169.99 -4.71 14.93 16 26 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 27 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 29 C 0.12 1.40 6.45 -2.99 -0.02 1.38 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 37 H 0.08 0.48 7.91 -51.93 -0.41 0.07 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.40 8.02 -51.93 -0.42 -0.02 16 40 H 0.08 0.31 7.24 -51.93 -0.38 -0.07 16 41 H 0.06 0.28 8.10 -51.93 -0.42 -0.14 16 42 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 43 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.35 5.37 8.43 -39.29 -0.33 5.04 16 47 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 48 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.37 7.87 5.76 -40.82 -0.24 7.63 16 50 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 51 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 52 H 0.09 1.46 7.48 -51.93 -0.39 1.07 16 LS Contribution 423.44 15.07 6.38 6.38 Total: -1.00 -37.35 423.44 -8.91 -46.27 By element: Atomic # 1 Polarization: 18.63 SS G_CDS: -9.29 Total: 9.34 kcal Atomic # 6 Polarization: 10.25 SS G_CDS: -0.08 Total: 10.16 kcal Atomic # 7 Polarization: -57.03 SS G_CDS: -0.51 Total: -57.53 kcal Atomic # 8 Polarization: -28.86 SS G_CDS: -0.70 Total: -29.55 kcal Atomic # 14 Polarization: 19.65 SS G_CDS: -4.71 Total: 14.93 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -37.35 -8.91 -46.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754811543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.806 kcal (2) G-P(sol) polarization free energy of solvation -37.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.914 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds