Wall clock time and date at job start Wed Apr 1 2020 00:13:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.46860 * 2 1 4 4 O 1.42895 * 109.46975 * 180.02562 * 3 2 1 5 5 C 1.42900 * 114.00275 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47571 * 179.97438 * 5 4 3 7 7 O 1.21278 * 119.99676 * 359.97438 * 6 5 4 8 8 N 1.34770 * 119.99834 * 180.02562 * 6 5 4 9 9 C 1.48115 * 127.03911 * 359.95934 * 8 6 5 10 10 C 1.54939 * 103.25748 * 140.74103 * 9 8 6 11 11 H 1.08992 * 110.74039 * 279.03869 * 10 9 8 12 12 C 1.53005 * 110.73816 * 155.71361 * 10 9 8 13 13 C 1.54616 * 102.83928 * 37.37983 * 10 9 8 14 14 H 1.09002 * 110.41591 * 97.08369 * 13 10 9 15 15 C 1.52993 * 110.32628 * 219.26007 * 13 10 9 16 16 N 1.46901 * 109.46977 * 182.07322 * 15 13 10 17 17 C 1.46902 * 110.99844 * 179.97438 * 16 15 13 18 18 C 1.50702 * 109.47027 * 179.97438 * 17 16 15 19 19 O 1.21293 * 120.00255 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99928 * 179.72353 * 18 17 16 21 21 C 1.37101 * 120.00327 * 180.27606 * 20 18 17 22 22 H 1.08001 * 119.99426 * 0.02562 * 21 20 18 23 23 C 1.38942 * 120.00412 * 180.02562 * 21 20 18 24 24 N 1.31411 * 120.00042 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 120.00013 * 0.02562 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99593 * 25 23 21 27 27 H 1.48494 * 109.47201 * 209.99761 * 25 23 21 28 28 H 1.48498 * 109.47011 * 329.99735 * 25 23 21 29 29 C 1.47489 * 127.03109 * 179.97438 * 8 6 5 30 30 H 1.09005 * 109.47177 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47259 * 300.00110 * 1 2 3 32 32 H 1.08996 * 109.47412 * 60.00274 * 1 2 3 33 33 H 1.08996 * 109.47259 * 239.99890 * 2 1 3 34 34 H 1.08996 * 109.47412 * 119.99726 * 2 1 3 35 35 H 1.08996 * 109.47274 * 59.99899 * 3 2 1 36 36 H 1.09002 * 109.46700 * 299.99664 * 3 2 1 37 37 H 1.09000 * 109.46731 * 59.99382 * 5 4 3 38 38 H 1.09000 * 109.47078 * 300.00381 * 5 4 3 39 39 H 1.09000 * 110.66265 * 259.18789 * 9 8 6 40 40 H 1.09004 * 110.66147 * 22.29468 * 9 8 6 41 41 H 1.09004 * 109.47041 * 306.58738 * 12 10 9 42 42 H 1.09001 * 109.47211 * 66.58056 * 12 10 9 43 43 H 1.09002 * 109.47132 * 186.58447 * 12 10 9 44 44 H 1.08997 * 109.47854 * 62.07211 * 15 13 10 45 45 H 1.09005 * 109.47140 * 302.07092 * 15 13 10 46 46 H 1.00902 * 111.00235 * 56.04818 * 16 15 13 47 47 H 1.09004 * 109.47131 * 60.00016 * 17 16 15 48 48 H 1.09000 * 109.47732 * 300.00127 * 17 16 15 49 49 H 0.97000 * 120.00317 * 0.28382 * 20 18 17 50 50 H 0.97005 * 120.00014 * 180.02562 * 24 23 21 51 51 H 1.09002 * 109.91275 * 86.05244 * 29 8 6 52 52 H 1.08998 * 110.07149 * 324.86486 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 3.4689 1.4426 -0.0006 5 6 4.0502 2.7481 -0.0012 6 6 5.5525 2.6291 -0.0012 7 8 6.0740 1.5342 -0.0002 8 7 6.3163 3.7395 -0.0012 9 6 5.8479 5.1446 -0.0021 10 6 6.8427 5.8514 0.9525 11 1 6.5620 5.6875 1.9929 12 6 6.9231 7.3472 0.6407 13 6 8.1836 5.1522 0.6305 14 1 8.7623 5.7468 -0.0763 15 6 8.9855 4.9240 1.9133 16 7 10.2754 4.3046 1.5808 17 6 11.0745 4.0707 2.7910 18 6 12.3872 3.4353 2.4111 19 8 12.6330 3.2009 1.2467 20 7 13.2905 3.1331 3.3646 21 6 14.4871 2.5603 3.0185 22 1 14.7059 2.3516 1.9817 23 6 15.4181 2.2482 4.0015 24 7 16.5652 1.6996 3.6696 25 14 15.0393 2.6085 5.7948 26 1 14.3696 1.4321 6.4054 27 1 16.3036 2.8905 6.5209 28 1 14.1434 3.7895 5.8839 29 6 7.7898 3.8040 -0.0007 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8901 37 1 3.7288 3.2892 0.8887 38 1 3.7281 3.2887 -0.8912 39 1 5.9083 5.5696 -1.0040 40 1 4.8307 5.2112 0.3842 41 1 7.1473 7.4863 -0.4169 42 1 5.9687 7.8190 0.8747 43 1 7.7104 7.8019 1.2419 44 1 8.4271 4.2655 2.5787 45 1 9.1582 5.8795 2.4087 46 1 10.7847 4.8655 0.9144 47 1 10.5307 3.4064 3.4627 48 1 11.2617 5.0204 3.2922 49 1 13.0941 3.3208 4.2958 50 1 17.2150 1.4814 4.3560 51 1 8.1641 3.7495 -1.0229 52 1 8.1999 2.9841 0.5889 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754811543.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:58 Heat of formation + Delta-G solvation = -146.302212 kcal Electronic energy + Delta-G solvation = -29376.624232 eV Core-core repulsion = 25181.891922 eV Total energy + Delta-G solvation = -4194.732310 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.28431 -40.32220 -39.49794 -38.47224 -36.67824 -35.87185 -34.60293 -33.91960 -33.73769 -31.69310 -29.85141 -28.31234 -27.21049 -26.79901 -25.99967 -24.81674 -22.66000 -22.43130 -21.41589 -20.99822 -20.43997 -20.20970 -18.37266 -17.81449 -17.68917 -17.45859 -17.04732 -16.96850 -16.61857 -16.45678 -15.83523 -15.65264 -15.36975 -15.25028 -15.03804 -14.76280 -14.64275 -14.36258 -14.16370 -14.08111 -13.76753 -13.59326 -13.26568 -13.20666 -13.06042 -12.94819 -12.90284 -12.83427 -12.68743 -12.49455 -12.42568 -11.99081 -11.85605 -11.80523 -11.77968 -11.53329 -11.52966 -11.51390 -10.90131 -10.69854 -10.45639 -10.26532 -9.77404 -9.30512 -8.42816 -6.04075 1.28309 1.34869 1.43306 1.50670 1.63564 1.93884 2.21824 2.70266 2.85058 3.13314 3.31993 3.48179 3.59843 3.74579 3.90507 4.02460 4.06479 4.13644 4.17212 4.22647 4.23621 4.39015 4.40874 4.41641 4.50545 4.51727 4.55620 4.57518 4.64514 4.66030 4.69565 4.78775 4.83609 4.92379 4.99285 5.07366 5.16334 5.17005 5.22317 5.23708 5.35198 5.39451 5.50938 5.57196 5.88796 6.03664 6.11150 6.41042 6.50112 6.58228 6.86254 7.09334 7.37815 7.94758 8.74961 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012706 B = 0.001874 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2203.073480 B =14934.755883 C =16314.613211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.129 4.129 3 C 0.057 3.943 4 O -0.407 6.407 5 C 0.057 3.943 6 C 0.517 3.483 7 O -0.586 6.586 8 N -0.620 5.620 9 C 0.098 3.902 10 C -0.091 4.091 11 H 0.091 0.909 12 C -0.137 4.137 13 C -0.086 4.086 14 H 0.095 0.905 15 C 0.072 3.928 16 N -0.692 5.692 17 C 0.064 3.936 18 C 0.447 3.553 19 O -0.615 6.615 20 N -0.591 5.591 21 C -0.332 4.332 22 H 0.053 0.947 23 C -0.015 4.015 24 N -0.934 5.934 25 Si 0.967 3.033 26 H -0.260 1.260 27 H -0.273 1.273 28 H -0.229 1.229 29 C 0.115 3.885 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.058 0.942 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.112 0.888 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.060 0.940 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.347 0.653 47 H 0.106 0.894 48 H 0.082 0.918 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.054 0.946 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.781 15.245 -1.386 39.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.167 4.167 3 C -0.019 4.019 4 O -0.326 6.326 5 C -0.022 4.022 6 C 0.307 3.693 7 O -0.465 6.465 8 N -0.355 5.355 9 C -0.023 4.023 10 C -0.110 4.110 11 H 0.109 0.891 12 C -0.195 4.195 13 C -0.105 4.105 14 H 0.114 0.886 15 C -0.056 4.056 16 N -0.325 5.325 17 C -0.068 4.068 18 C 0.235 3.765 19 O -0.499 6.499 20 N -0.233 5.233 21 C -0.461 4.461 22 H 0.072 0.928 23 C -0.214 4.214 24 N -0.575 5.575 25 Si 0.786 3.214 26 H -0.184 1.184 27 H -0.198 1.198 28 H -0.153 1.153 29 C -0.008 4.008 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.111 0.889 40 H 0.130 0.870 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.079 0.921 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.166 0.834 47 H 0.124 0.876 48 H 0.100 0.900 49 H 0.225 0.775 50 H 0.089 0.911 51 H 0.072 0.928 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -36.366 13.527 -2.137 38.860 hybrid contribution 1.267 0.311 0.822 1.542 sum -35.099 13.839 -1.315 37.752 Atomic orbital electron populations 1.21657 0.92673 1.02837 1.02865 1.21507 0.97268 0.95506 1.02404 1.22834 0.78546 0.98551 1.01957 1.87986 1.21853 1.26994 1.95797 1.22260 0.88060 0.86585 1.05264 1.20774 0.90143 0.82657 0.75770 1.90746 1.75895 1.28492 1.51406 1.48873 1.07265 1.06988 1.72355 1.23042 0.99986 0.78051 1.01267 1.22306 0.92267 0.96107 1.00369 0.89078 1.21731 1.03161 0.92305 1.02271 1.22151 0.97060 0.94306 0.97006 0.88627 1.22081 0.88943 0.97857 0.96760 1.60028 1.05538 1.54594 1.12356 1.21593 0.90501 1.00962 0.93758 1.21045 0.86994 0.82998 0.85497 1.90545 1.79969 1.58494 1.20916 1.42029 1.15495 1.56972 1.08762 1.19018 0.93304 1.38449 0.95304 0.92839 1.26136 0.94419 0.95986 1.04823 1.69810 1.08532 1.42593 1.36540 0.85344 0.79430 0.80433 0.76167 1.18426 1.19772 1.15251 1.21946 0.79522 0.99005 1.00296 0.91772 0.91568 0.91547 0.92364 0.92389 0.91252 0.91265 0.87105 0.87177 0.88882 0.86981 0.91903 0.90451 0.92139 0.91408 0.92397 0.83439 0.87577 0.90033 0.77453 0.91112 0.92770 0.93132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 9.91 71.98 0.71 -0.44 16 2 C -0.13 -1.77 6.30 30.60 0.19 -1.58 16 3 C 0.06 0.73 5.94 71.98 0.43 1.16 16 4 O -0.41 -9.00 9.88 -129.94 -1.28 -10.29 16 5 C 0.06 0.88 5.35 71.24 0.38 1.27 16 6 C 0.52 13.33 7.97 87.66 0.70 14.03 16 7 O -0.59 -23.02 16.84 16.01 0.27 -22.75 16 8 N -0.62 -12.42 3.29 -809.44 -2.66 -15.09 16 9 C 0.10 0.84 6.39 86.73 0.55 1.40 16 10 C -0.09 -0.82 3.21 -9.58 -0.03 -0.85 16 11 H 0.09 0.78 7.86 -2.39 -0.02 0.76 16 12 C -0.14 -0.71 9.16 71.98 0.66 -0.05 16 13 C -0.09 -1.41 2.76 -9.91 -0.03 -1.44 16 14 H 0.10 1.47 7.85 -2.39 -0.02 1.45 16 15 C 0.07 1.42 4.76 86.30 0.41 1.83 16 16 N -0.69 -20.44 5.81 -517.93 -3.01 -23.46 16 17 C 0.06 2.01 6.17 85.56 0.53 2.54 16 18 C 0.45 20.87 7.82 87.66 0.69 21.56 16 19 O -0.61 -35.33 15.78 -3.07 -0.05 -35.38 16 20 N -0.59 -28.73 5.09 -306.98 -1.56 -30.29 16 21 C -0.33 -20.00 10.16 84.04 0.85 -19.15 16 22 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16 23 C -0.02 -0.85 5.50 84.92 0.47 -0.39 16 24 N -0.93 -57.48 13.96 21.66 0.30 -57.17 16 25 Si 0.97 39.59 27.74 68.60 1.90 41.49 16 26 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 27 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 28 H -0.23 -7.83 6.52 99.48 0.65 -7.18 16 29 C 0.12 2.82 6.45 86.52 0.56 3.38 16 30 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 32 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.11 0.94 7.91 -2.39 -0.02 0.92 16 38 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.09 0.58 8.02 -2.39 -0.02 0.56 16 40 H 0.11 0.27 7.24 -2.38 -0.02 0.26 16 41 H 0.06 0.32 8.10 -2.38 -0.02 0.30 16 42 H 0.08 0.16 8.14 -2.39 -0.02 0.14 16 43 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 44 H 0.07 1.41 8.14 -2.39 -0.02 1.40 16 45 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 46 H 0.35 10.61 8.43 -89.69 -0.76 9.86 16 47 H 0.11 2.96 8.14 -2.38 -0.02 2.94 16 48 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 49 H 0.39 15.64 5.76 -92.71 -0.53 15.10 16 50 H 0.28 15.67 8.31 -92.70 -0.77 14.90 16 51 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 52 H 0.05 1.69 7.48 -2.39 -0.02 1.67 16 Total: -1.00 -93.29 423.44 0.54 -92.75 By element: Atomic # 1 Polarization: 37.36 SS G_CDS: -0.44 Total: 36.92 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 7.07 Total: 23.25 kcal Atomic # 7 Polarization: -119.07 SS G_CDS: -6.93 Total: -126.01 kcal Atomic # 8 Polarization: -67.35 SS G_CDS: -1.06 Total: -68.41 kcal Atomic # 14 Polarization: 39.59 SS G_CDS: 1.90 Total: 41.49 kcal Total: -93.29 0.54 -92.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754811543.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.549 kcal (2) G-P(sol) polarization free energy of solvation -93.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds