Wall clock time and date at job start Wed Apr 1 2020 00:12:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47013 * 2 1 4 4 O 1.42906 * 109.47062 * 119.99682 * 2 1 3 5 5 C 1.42895 * 113.99672 * 90.00470 * 4 2 1 6 6 C 1.50704 * 109.47113 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99911 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00270 * 179.97438 * 6 5 4 9 9 C 1.47192 * 125.73645 * 359.86941 * 8 6 5 10 10 C 1.54323 * 107.29513 * 181.02615 * 9 8 6 11 11 C 1.55160 * 102.94127 * 22.28167 * 10 9 8 12 12 H 1.09001 * 111.00142 * 82.57402 * 11 10 9 13 13 C 1.53002 * 111.00107 * 206.42505 * 11 10 9 14 14 C 1.53002 * 109.47153 * 287.19746 * 13 11 10 15 15 N 1.46899 * 109.46648 * 180.02562 * 14 13 11 16 16 C 1.46907 * 110.99399 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47016 * 179.97438 * 16 15 14 18 18 O 1.21292 * 120.00051 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00135 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00215 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99960 * 359.97438 * 20 19 17 22 22 C 1.38956 * 120.00196 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99785 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99991 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47005 * 59.99901 * 24 22 20 26 26 H 1.48494 * 109.46895 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46920 * 300.00119 * 24 22 20 28 28 C 1.47425 * 125.65052 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47068 * 299.99990 * 1 2 3 30 30 H 1.08994 * 109.47314 * 60.00518 * 1 2 3 31 31 H 1.09002 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47017 * 239.99964 * 2 1 3 33 33 H 1.09004 * 109.47110 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46979 * 299.99923 * 3 2 1 35 35 H 1.09005 * 109.47195 * 60.00088 * 3 2 1 36 36 H 1.08997 * 109.47739 * 59.99548 * 5 4 2 37 37 H 1.09004 * 109.47189 * 299.99302 * 5 4 2 38 38 H 1.08999 * 109.79138 * 61.63846 * 9 8 6 39 39 H 1.08999 * 109.93981 * 300.49351 * 9 8 6 40 40 H 1.09004 * 110.71764 * 263.92074 * 10 9 8 41 41 H 1.09001 * 110.71924 * 140.64844 * 10 9 8 42 42 H 1.09001 * 109.47237 * 47.19692 * 13 11 10 43 43 H 1.09000 * 109.46837 * 167.19377 * 13 11 10 44 44 H 1.09001 * 109.47005 * 300.00088 * 14 13 11 45 45 H 1.08997 * 109.46850 * 60.00291 * 14 13 11 46 46 H 1.00898 * 111.00206 * 303.94748 * 15 14 13 47 47 H 1.08996 * 109.47249 * 300.00101 * 16 15 14 48 48 H 1.08995 * 109.47409 * 60.00232 * 16 15 14 49 49 H 0.97001 * 119.99895 * 359.97438 * 19 17 16 50 50 H 0.97005 * 119.99444 * 180.02562 * 23 22 20 51 51 H 1.09002 * 110.36696 * 36.99882 * 28 8 6 52 52 H 1.08995 * 110.36608 * 274.78719 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 -2.0781 0.9887 6 6 2.7015 -2.6832 2.2747 7 8 2.8752 -1.9808 3.2480 8 7 2.9558 -4.0049 2.3434 9 6 2.7867 -4.9711 1.2460 10 6 3.1734 -6.3607 1.7945 11 6 2.9948 -6.1916 3.3265 12 1 1.9519 -6.3228 3.6150 13 6 3.8995 -7.1577 4.0940 14 6 3.3496 -8.5800 3.9687 15 7 4.2181 -9.5073 4.7061 16 6 3.7201 -10.8859 4.6074 17 6 4.6347 -11.8064 5.3737 18 8 5.6060 -11.3583 5.9455 19 7 4.3740 -13.1277 5.4230 20 6 5.2056 -13.9651 6.1205 21 1 6.0701 -13.5659 6.6303 22 6 4.9365 -15.3273 6.1717 23 7 3.8844 -15.8129 5.5519 24 14 6.0702 -16.4684 7.1217 25 1 6.1060 -16.0559 8.5478 26 1 5.5665 -17.8618 7.0224 27 1 7.4390 -16.3943 6.5505 28 6 3.4471 -4.7246 3.5325 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 2.9320 -2.2467 0.1987 37 1 1.2538 -2.5433 0.7126 38 1 3.4409 -4.7049 0.4158 39 1 1.7483 -4.9791 0.9145 40 1 4.2093 -6.5969 1.5508 41 1 2.5011 -7.1278 1.4101 42 1 4.9067 -7.1197 3.6789 43 1 3.9288 -6.8706 5.1451 44 1 2.3425 -8.6180 4.3838 45 1 3.3205 -8.8669 2.9176 46 1 5.1719 -9.4437 4.3832 47 1 2.7153 -10.9401 5.0262 48 1 3.6943 -11.1888 3.5607 49 1 3.5974 -13.4862 4.9654 50 1 3.6964 -16.7639 5.5879 51 1 2.9993 -4.3130 4.4370 52 1 4.5341 -4.6674 3.5883 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754905610.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:24 Heat of formation + Delta-G solvation = -126.732616 kcal Electronic energy + Delta-G solvation = -28524.894921 eV Core-core repulsion = 24331.011213 eV Total energy + Delta-G solvation = -4193.883708 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.53406 -38.94497 -38.30984 -37.76043 -35.84588 -33.94708 -33.35516 -33.00607 -31.22712 -30.22180 -29.42851 -27.89344 -27.50304 -25.84485 -24.04627 -23.37389 -22.16395 -21.83074 -20.61654 -19.80396 -19.19471 -17.88372 -17.68516 -17.33111 -16.83757 -16.17208 -15.98558 -15.71740 -15.60878 -15.07439 -14.60681 -14.44379 -14.36118 -14.21799 -13.91561 -13.72933 -13.62387 -13.30034 -13.17331 -13.05232 -12.87743 -12.67919 -12.59304 -12.42760 -12.34307 -12.09213 -11.94524 -11.58052 -11.53303 -11.42652 -11.25132 -11.11249 -11.02980 -10.98037 -10.72885 -10.44257 -10.21392 -10.18272 -10.10063 -9.50069 -9.04881 -8.46269 -8.05686 -7.95890 -6.41887 -3.82683 2.23523 2.24752 3.20237 3.25848 3.30385 3.34987 3.90477 3.92799 4.06451 4.15932 4.26279 4.33429 4.41039 4.49146 4.55467 4.57686 4.64969 4.70736 4.79207 4.94480 5.01280 5.09456 5.11629 5.18311 5.22046 5.24131 5.26329 5.28154 5.33677 5.39907 5.44150 5.48782 5.55153 5.63111 5.67395 5.71345 5.74689 5.79039 5.89332 5.97752 6.09121 6.13290 6.27429 6.62007 7.08020 7.22165 7.54935 7.66484 7.79976 8.06169 8.61342 9.17793 9.54249 10.05913 10.75807 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.048647 B = 0.001257 C = 0.001240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.432637 B =22266.420418 C =22578.808631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.079 3.921 3 C -0.150 4.150 4 O -0.358 6.358 5 C 0.050 3.950 6 C 0.528 3.472 7 O -0.518 6.518 8 N -0.621 5.621 9 C 0.097 3.903 10 C -0.129 4.129 11 C -0.097 4.097 12 H 0.088 0.912 13 C -0.107 4.107 14 C 0.061 3.939 15 N -0.671 5.671 16 C 0.051 3.949 17 C 0.440 3.560 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.301 4.301 21 H 0.102 0.898 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.112 3.888 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.079 0.921 44 H 0.070 0.930 45 H 0.026 0.974 46 H 0.349 0.651 47 H 0.085 0.915 48 H 0.042 0.958 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.081 0.919 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.513 26.755 -17.598 33.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 C -0.207 4.207 4 O -0.277 6.277 5 C -0.030 4.030 6 C 0.316 3.684 7 O -0.392 6.392 8 N -0.358 5.358 9 C -0.026 4.026 10 C -0.167 4.167 11 C -0.117 4.117 12 H 0.106 0.894 13 C -0.145 4.145 14 C -0.069 4.069 15 N -0.303 5.303 16 C -0.081 4.081 17 C 0.225 3.775 18 O -0.468 6.468 19 N -0.200 5.200 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.010 4.010 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.097 0.903 44 H 0.088 0.912 45 H 0.045 0.955 46 H 0.168 0.832 47 H 0.103 0.897 48 H 0.060 0.940 49 H 0.225 0.775 50 H 0.082 0.918 51 H 0.099 0.901 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -8.119 27.561 -15.927 32.851 hybrid contribution 0.067 -1.392 -1.151 1.808 sum -8.052 26.169 -17.078 32.269 Atomic orbital electron populations 1.22319 0.95727 1.02444 1.02930 1.22188 0.93865 0.94092 0.87708 1.21859 1.01986 0.94139 1.02735 1.88070 1.86605 1.17613 1.35393 1.22179 1.01076 0.84163 0.95567 1.19892 0.78138 0.80514 0.89865 1.90755 1.51208 1.59490 1.37754 1.48471 1.66613 1.06403 1.14266 1.22164 1.01302 0.89184 0.89956 1.22768 1.03087 0.95313 0.95506 1.22370 1.01017 0.93458 0.94874 0.89384 1.21479 0.98363 0.93314 1.01326 1.21945 0.97608 0.91792 0.95511 1.60061 1.06165 1.04608 1.59457 1.21660 0.99347 0.88697 0.98429 1.19831 0.88144 0.83102 0.86398 1.90523 1.30954 1.75771 1.49503 1.41853 1.26253 1.05259 1.46649 1.19666 1.07492 0.88031 1.27834 0.87972 1.25254 0.97235 0.97536 0.97826 1.69606 1.26850 1.14691 1.43231 0.85920 0.79871 0.78506 0.79942 1.19864 1.20974 1.19914 1.22308 0.99485 0.90710 0.88517 0.91486 0.91402 0.92507 0.92036 0.91841 0.91052 0.91512 0.90362 0.90394 0.91237 0.91223 0.90058 0.89592 0.91476 0.90252 0.91169 0.95549 0.83217 0.89656 0.93968 0.77473 0.91833 0.90094 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.91 9.53 37.16 0.35 -0.55 16 2 C 0.08 0.49 3.34 -26.73 -0.09 0.40 16 3 C -0.15 -0.82 9.56 37.16 0.36 -0.47 16 4 O -0.36 -3.48 9.52 -55.14 -0.52 -4.01 16 5 C 0.05 0.37 5.43 36.01 0.20 0.57 16 6 C 0.53 5.70 7.93 -10.99 -0.09 5.62 16 7 O -0.52 -8.03 16.75 -14.35 -0.24 -8.27 16 8 N -0.62 -5.31 3.33 -170.40 -0.57 -5.88 16 9 C 0.10 0.51 6.50 -2.97 -0.02 0.49 16 10 C -0.13 -0.72 5.90 -24.89 -0.15 -0.87 16 11 C -0.10 -0.71 3.00 -88.48 -0.27 -0.98 16 12 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 13 C -0.11 -0.97 4.98 -26.73 -0.13 -1.10 16 14 C 0.06 0.67 5.59 -3.82 -0.02 0.65 16 15 N -0.67 -10.45 6.13 -115.06 -0.71 -11.15 16 16 C 0.05 0.89 6.17 -4.97 -0.03 0.86 16 17 C 0.44 10.36 7.82 -10.99 -0.09 10.27 16 18 O -0.58 -15.87 15.78 5.55 0.09 -15.78 16 19 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 20 C -0.30 -8.39 9.68 -14.93 -0.14 -8.54 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 23 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 24 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 28 C 0.11 0.99 6.37 -2.54 -0.02 0.97 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.27 7.87 -51.93 -0.41 -0.14 16 32 H 0.06 0.27 7.79 -51.93 -0.40 -0.14 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.40 8.08 -51.93 -0.42 -0.02 16 37 H 0.08 0.41 7.87 -51.93 -0.41 0.00 16 38 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.08 0.46 7.91 -51.93 -0.41 0.05 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.60 7.97 -51.93 -0.41 0.18 16 43 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 45 H 0.03 0.26 7.75 -51.93 -0.40 -0.14 16 46 H 0.35 5.59 8.43 -39.29 -0.33 5.26 16 47 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 49 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 50 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 51 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 52 H 0.07 0.64 8.03 -51.93 -0.42 0.23 16 LS Contribution 426.98 15.07 6.43 6.43 Total: -1.00 -35.28 426.98 -9.47 -44.75 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: -9.36 Total: 8.11 kcal Atomic # 6 Polarization: 8.07 SS G_CDS: -0.23 Total: 7.84 kcal Atomic # 7 Polarization: -54.44 SS G_CDS: -0.61 Total: -55.05 kcal Atomic # 8 Polarization: -27.39 SS G_CDS: -0.68 Total: -28.07 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -35.28 -9.47 -44.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754905610.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.983 kcal (2) G-P(sol) polarization free energy of solvation -35.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds