Wall clock time and date at job start Wed Apr 1 2020 00:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47013 * 2 1 4 4 O 1.42906 * 109.47062 * 119.99682 * 2 1 3 5 5 C 1.42895 * 113.99672 * 90.00470 * 4 2 1 6 6 C 1.50704 * 109.47113 * 179.97438 * 5 4 2 7 7 O 1.21281 * 119.99911 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00270 * 179.97438 * 6 5 4 9 9 C 1.47192 * 125.73645 * 359.86941 * 8 6 5 10 10 C 1.54323 * 107.29513 * 181.02615 * 9 8 6 11 11 C 1.55160 * 102.94127 * 22.28167 * 10 9 8 12 12 H 1.09001 * 111.00142 * 82.57402 * 11 10 9 13 13 C 1.53002 * 111.00107 * 206.42505 * 11 10 9 14 14 C 1.53002 * 109.47153 * 287.19746 * 13 11 10 15 15 N 1.46899 * 109.46648 * 180.02562 * 14 13 11 16 16 C 1.46907 * 110.99399 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.47016 * 179.97438 * 16 15 14 18 18 O 1.21292 * 120.00051 * 359.97438 * 17 16 15 19 19 N 1.34769 * 120.00135 * 180.02562 * 17 16 15 20 20 C 1.37094 * 120.00215 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99960 * 359.97438 * 20 19 17 22 22 C 1.38956 * 120.00196 * 179.97438 * 20 19 17 23 23 N 1.31410 * 119.99785 * 359.97438 * 22 20 19 24 24 Si 1.86806 * 119.99991 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47005 * 59.99901 * 24 22 20 26 26 H 1.48494 * 109.46895 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46920 * 300.00119 * 24 22 20 28 28 C 1.47425 * 125.65052 * 180.02562 * 8 6 5 29 29 H 1.09005 * 109.47068 * 299.99990 * 1 2 3 30 30 H 1.08994 * 109.47314 * 60.00518 * 1 2 3 31 31 H 1.09002 * 109.47187 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47017 * 239.99964 * 2 1 3 33 33 H 1.09004 * 109.47110 * 180.02562 * 3 2 1 34 34 H 1.09001 * 109.46979 * 299.99923 * 3 2 1 35 35 H 1.09005 * 109.47195 * 60.00088 * 3 2 1 36 36 H 1.08997 * 109.47739 * 59.99548 * 5 4 2 37 37 H 1.09004 * 109.47189 * 299.99302 * 5 4 2 38 38 H 1.08999 * 109.79138 * 61.63846 * 9 8 6 39 39 H 1.08999 * 109.93981 * 300.49351 * 9 8 6 40 40 H 1.09004 * 110.71764 * 263.92074 * 10 9 8 41 41 H 1.09001 * 110.71924 * 140.64844 * 10 9 8 42 42 H 1.09001 * 109.47237 * 47.19692 * 13 11 10 43 43 H 1.09000 * 109.46837 * 167.19377 * 13 11 10 44 44 H 1.09001 * 109.47005 * 300.00088 * 14 13 11 45 45 H 1.08997 * 109.46850 * 60.00291 * 14 13 11 46 46 H 1.00898 * 111.00206 * 303.94748 * 15 14 13 47 47 H 1.08996 * 109.47249 * 300.00101 * 16 15 14 48 48 H 1.08995 * 109.47409 * 60.00232 * 16 15 14 49 49 H 0.97001 * 119.99895 * 359.97438 * 19 17 16 50 50 H 0.97005 * 119.99444 * 180.02562 * 23 22 20 51 51 H 1.09002 * 110.36696 * 36.99882 * 28 8 6 52 52 H 1.08995 * 110.36608 * 274.78719 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 -2.0781 0.9887 6 6 2.7015 -2.6832 2.2747 7 8 2.8752 -1.9808 3.2480 8 7 2.9558 -4.0049 2.3434 9 6 2.7867 -4.9711 1.2460 10 6 3.1734 -6.3607 1.7945 11 6 2.9948 -6.1916 3.3265 12 1 1.9519 -6.3228 3.6150 13 6 3.8995 -7.1577 4.0940 14 6 3.3496 -8.5800 3.9687 15 7 4.2181 -9.5073 4.7061 16 6 3.7201 -10.8859 4.6074 17 6 4.6347 -11.8064 5.3737 18 8 5.6060 -11.3583 5.9455 19 7 4.3740 -13.1277 5.4230 20 6 5.2056 -13.9651 6.1205 21 1 6.0701 -13.5659 6.6303 22 6 4.9365 -15.3273 6.1717 23 7 3.8844 -15.8129 5.5519 24 14 6.0702 -16.4684 7.1217 25 1 6.1060 -16.0559 8.5478 26 1 5.5665 -17.8618 7.0224 27 1 7.4390 -16.3943 6.5505 28 6 3.4471 -4.7246 3.5325 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 2.9320 -2.2467 0.1987 37 1 1.2538 -2.5433 0.7126 38 1 3.4409 -4.7049 0.4158 39 1 1.7483 -4.9791 0.9145 40 1 4.2093 -6.5969 1.5508 41 1 2.5011 -7.1278 1.4101 42 1 4.9067 -7.1197 3.6789 43 1 3.9288 -6.8706 5.1451 44 1 2.3425 -8.6180 4.3838 45 1 3.3205 -8.8669 2.9176 46 1 5.1719 -9.4437 4.3832 47 1 2.7153 -10.9401 5.0262 48 1 3.6943 -11.1888 3.5607 49 1 3.5974 -13.4862 4.9654 50 1 3.6964 -16.7639 5.5879 51 1 2.9993 -4.3130 4.4370 52 1 4.5341 -4.6674 3.5883 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754905610.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:12:23 Heat of formation + Delta-G solvation = -152.131677 kcal Electronic energy + Delta-G solvation = -28525.996307 eV Core-core repulsion = 24331.011213 eV Total energy + Delta-G solvation = -4194.985094 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.23072 -40.14663 -39.48423 -38.54615 -36.99245 -35.88057 -34.13823 -33.65459 -33.23362 -30.94396 -30.15656 -28.70554 -28.07466 -27.22069 -25.56156 -24.00410 -23.07240 -22.27064 -21.38991 -20.92422 -20.43911 -19.88047 -18.32269 -17.94024 -17.76877 -17.44749 -17.00355 -16.65877 -16.46907 -16.28361 -15.91813 -15.67967 -15.41447 -15.14542 -15.00878 -14.76317 -14.38099 -14.27922 -13.94573 -13.82765 -13.63471 -13.53926 -13.47855 -13.24500 -13.07891 -13.05110 -12.96190 -12.88797 -12.69062 -12.42640 -12.38035 -12.15462 -12.11832 -11.85285 -11.66170 -11.58664 -11.49974 -11.43477 -10.93520 -10.66830 -10.33335 -10.00704 -9.73693 -9.26031 -8.45936 -5.94654 1.40550 1.42632 1.47943 1.53348 1.63169 2.06718 2.30175 2.84785 2.95499 3.21621 3.38308 3.53470 3.66564 3.75592 3.88861 3.99219 4.06935 4.13139 4.21562 4.27751 4.32768 4.33090 4.33376 4.40811 4.46553 4.54124 4.57224 4.66256 4.73177 4.74015 4.77231 4.79996 4.84295 4.89881 4.92893 4.93910 5.05148 5.16793 5.26525 5.28510 5.31835 5.33591 5.41493 5.44441 5.92304 6.14396 6.15597 6.43566 6.46962 6.61465 7.05557 7.13564 7.57490 8.13172 8.71181 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.048647 B = 0.001257 C = 0.001240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.432637 B =22266.420418 C =22578.808631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 C -0.151 4.151 4 O -0.396 6.396 5 C 0.054 3.946 6 C 0.518 3.482 7 O -0.581 6.581 8 N -0.618 5.618 9 C 0.093 3.907 10 C -0.124 4.124 11 C -0.086 4.086 12 H 0.092 0.908 13 C -0.099 4.099 14 C 0.064 3.936 15 N -0.690 5.690 16 C 0.067 3.933 17 C 0.435 3.565 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.337 4.337 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.919 5.919 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.107 3.893 29 H 0.048 0.952 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.085 0.915 33 H 0.056 0.944 34 H 0.094 0.906 35 H 0.050 0.950 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.075 0.925 45 H 0.049 0.951 46 H 0.344 0.656 47 H 0.102 0.898 48 H 0.069 0.931 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.058 0.942 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.625 26.119 -20.348 34.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.016 3.984 3 C -0.208 4.208 4 O -0.316 6.316 5 C -0.025 4.025 6 C 0.307 3.693 7 O -0.461 6.461 8 N -0.353 5.353 9 C -0.029 4.029 10 C -0.162 4.162 11 C -0.106 4.106 12 H 0.110 0.890 13 C -0.138 4.138 14 C -0.064 4.064 15 N -0.323 5.323 16 C -0.066 4.066 17 C 0.222 3.778 18 O -0.512 6.512 19 N -0.210 5.210 20 C -0.467 4.467 21 H 0.096 0.904 22 C -0.210 4.210 23 N -0.560 5.560 24 Si 0.815 3.185 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.016 4.016 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.112 0.888 35 H 0.069 0.931 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.101 0.899 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.093 0.907 45 H 0.068 0.932 46 H 0.162 0.838 47 H 0.120 0.880 48 H 0.087 0.913 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.076 0.924 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -9.268 26.898 -18.732 34.063 hybrid contribution 0.416 -1.154 -0.304 1.264 sum -8.852 25.744 -19.035 33.219 Atomic orbital electron populations 1.22309 0.95100 1.02796 1.02983 1.22418 0.94411 0.94099 0.87497 1.21901 1.01573 0.94287 1.03066 1.88040 1.87108 1.18896 1.37554 1.22300 1.02943 0.83321 0.93963 1.20662 0.77367 0.80805 0.90426 1.90717 1.54186 1.61104 1.40067 1.48583 1.65274 1.06380 1.15022 1.22446 1.03286 0.87914 0.89224 1.22796 1.03800 0.96056 0.93506 1.22216 1.00518 0.91492 0.96337 0.89003 1.21378 0.98900 0.92851 1.00630 1.22016 0.96851 0.91283 0.96243 1.60061 1.06663 1.04274 1.61288 1.21516 0.98066 0.88242 0.98750 1.20983 0.88143 0.83117 0.85508 1.90490 1.33062 1.76475 1.51175 1.41919 1.26236 1.05915 1.46886 1.19642 1.08062 0.89328 1.29645 0.90424 1.26007 0.98521 0.98258 0.98230 1.69662 1.27575 1.15327 1.43460 0.85015 0.78077 0.77010 0.78398 1.19868 1.19396 1.19643 1.22274 0.99078 0.91903 0.88296 0.93250 0.89509 0.91996 0.89662 0.92520 0.88764 0.93121 0.87526 0.87727 0.89142 0.88975 0.89853 0.87759 0.91317 0.92094 0.90675 0.93248 0.83782 0.87956 0.91272 0.76917 0.91271 0.92361 0.91531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.53 71.98 0.69 -0.83 16 2 C 0.07 0.78 3.34 30.59 0.10 0.88 16 3 C -0.15 -1.55 9.56 71.98 0.69 -0.87 16 4 O -0.40 -7.51 9.52 -129.94 -1.24 -8.75 16 5 C 0.05 0.70 5.43 71.24 0.39 1.09 16 6 C 0.52 11.08 7.93 87.66 0.69 11.78 16 7 O -0.58 -19.10 16.75 16.00 0.27 -18.84 16 8 N -0.62 -9.86 3.33 -811.41 -2.70 -12.57 16 9 C 0.09 0.66 6.50 86.70 0.56 1.22 16 10 C -0.12 -0.96 5.90 31.78 0.19 -0.77 16 11 C -0.09 -1.11 3.00 -9.41 -0.03 -1.13 16 12 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 13 C -0.10 -1.69 4.98 30.60 0.15 -1.53 16 14 C 0.06 1.26 5.59 86.30 0.48 1.74 16 15 N -0.69 -20.62 6.13 -517.92 -3.17 -23.79 16 16 C 0.07 2.19 6.17 85.56 0.53 2.72 16 17 C 0.43 20.55 7.82 87.66 0.69 21.24 16 18 O -0.63 -34.78 15.78 -3.07 -0.05 -34.83 16 19 N -0.57 -29.17 5.29 -306.99 -1.62 -30.79 16 20 C -0.34 -19.16 9.68 84.04 0.81 -18.34 16 21 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 22 C -0.01 -0.54 5.50 84.93 0.47 -0.08 16 23 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 24 Si 0.99 42.71 29.55 68.60 2.03 44.74 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 26 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 28 C 0.11 1.90 6.37 86.85 0.55 2.45 16 29 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.06 0.46 7.87 -2.39 -0.02 0.45 16 32 H 0.09 0.49 7.79 -2.39 -0.02 0.47 16 33 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 34 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 36 H 0.11 0.75 8.08 -2.39 -0.02 0.73 16 37 H 0.11 0.77 7.87 -2.38 -0.02 0.75 16 38 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 39 H 0.09 0.31 8.14 -2.39 -0.02 0.29 16 40 H 0.08 0.66 7.91 -2.39 -0.02 0.64 16 41 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 42 H 0.07 1.15 7.97 -2.39 -0.02 1.13 16 43 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.05 0.77 7.75 -2.39 -0.02 0.76 16 46 H 0.34 10.78 8.43 -89.70 -0.76 10.02 16 47 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 48 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.40 19.06 7.90 -92.71 -0.73 18.33 16 50 H 0.28 13.93 8.31 -92.70 -0.77 13.16 16 51 H 0.06 1.28 8.04 -2.39 -0.02 1.26 16 52 H 0.07 1.23 8.03 -2.39 -0.02 1.21 16 Total: -1.00 -80.25 426.98 0.17 -80.08 By element: Atomic # 1 Polarization: 34.66 SS G_CDS: -0.58 Total: 34.07 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: 6.96 Total: 19.56 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -7.22 Total: -116.04 kcal Atomic # 8 Polarization: -61.40 SS G_CDS: -1.02 Total: -62.41 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.74 kcal Total: -80.25 0.17 -80.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754905610.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.055 kcal (2) G-P(sol) polarization free energy of solvation -80.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds