Wall clock time and date at job start Wed Apr 1 2020 01:26:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47216 * 2 1 4 4 O 1.42901 * 109.46992 * 120.00007 * 2 1 3 5 5 C 1.42895 * 113.99948 * 149.99732 * 4 2 1 6 6 C 1.53006 * 109.47036 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00025 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00035 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.64861 * 0.03165 * 9 7 6 11 11 C 1.54324 * 107.27292 * 181.02155 * 10 9 7 12 12 H 1.08994 * 110.72112 * 140.55302 * 11 10 9 13 13 C 1.52993 * 110.71630 * 263.83021 * 11 10 9 14 14 C 1.55161 * 102.93965 * 22.19104 * 11 10 9 15 15 H 1.08999 * 111.00275 * 82.61407 * 14 11 10 16 16 N 1.46903 * 111.00017 * 206.42514 * 14 11 10 17 17 C 1.46903 * 110.99791 * 205.00116 * 16 14 11 18 18 C 1.50699 * 109.46894 * 180.02562 * 17 16 14 19 19 O 1.21295 * 120.00336 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99784 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00063 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00056 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00058 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99898 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99939 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47068 * 60.00246 * 25 23 21 27 27 H 1.48495 * 109.47263 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47401 * 300.00552 * 25 23 21 29 29 C 1.47425 * 125.64734 * 179.71911 * 9 7 6 30 30 H 1.08995 * 109.47108 * 300.00596 * 1 2 3 31 31 H 1.09000 * 109.46663 * 59.99980 * 1 2 3 32 32 H 1.09000 * 109.46840 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46892 * 239.99860 * 2 1 3 34 34 H 1.09001 * 109.47579 * 300.00100 * 3 2 1 35 35 H 1.09008 * 109.47407 * 59.99916 * 3 2 1 36 36 H 1.09004 * 109.47291 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.46798 * 60.00190 * 5 4 2 38 38 H 1.08993 * 109.47318 * 299.99656 * 5 4 2 39 39 H 1.09001 * 109.46801 * 300.00369 * 6 5 4 40 40 H 1.09001 * 109.46998 * 59.99965 * 6 5 4 41 41 H 1.09008 * 109.88051 * 300.43822 * 10 9 7 42 42 H 1.08997 * 109.88006 * 61.44452 * 10 9 7 43 43 H 1.09003 * 109.47655 * 58.54879 * 13 11 10 44 44 H 1.08999 * 109.47270 * 178.54416 * 13 11 10 45 45 H 1.09001 * 109.47563 * 298.54278 * 13 11 10 46 46 H 1.00893 * 111.00413 * 328.95571 * 16 14 11 47 47 H 1.09005 * 109.46519 * 300.00271 * 17 16 14 48 48 H 1.09000 * 109.47134 * 59.99865 * 17 16 14 49 49 H 0.97002 * 120.00177 * 0.02562 * 20 18 17 50 50 H 0.96999 * 120.00003 * 179.97438 * 24 23 21 51 51 H 1.08995 * 110.36838 * 274.74855 * 29 9 7 52 52 H 1.08998 * 110.36491 * 37.07464 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3245 0.9886 6 6 3.6760 -2.0081 2.2946 7 6 5.0041 -2.6951 2.1066 8 8 5.5674 -2.6427 1.0338 9 7 5.5663 -3.3669 3.1309 10 6 4.9954 -3.5094 4.4782 11 6 5.9966 -4.3332 5.3152 12 1 6.0640 -3.9423 6.3304 13 6 5.6036 -5.8118 5.3279 14 6 7.3349 -4.1274 4.5576 15 1 7.8061 -3.1875 4.8453 16 7 8.2450 -5.2590 4.7796 17 6 9.6450 -4.8516 4.6006 18 6 10.5467 -6.0360 4.8352 19 8 10.0700 -7.1137 5.1227 20 7 11.8828 -5.8981 4.7244 21 6 12.7032 -6.9755 4.9384 22 1 12.2789 -7.9348 5.1952 23 6 14.0808 -6.8331 4.8247 24 7 14.5972 -5.6657 4.5127 25 14 15.1986 -8.3009 5.1169 26 1 14.8678 -9.3758 4.1471 27 1 16.6138 -7.8893 4.9351 28 1 15.0028 -8.8047 6.5000 29 6 6.8524 -4.0859 3.0839 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4424 0.0005 37 1 4.0199 -0.5874 0.7125 38 1 3.1808 -2.0707 0.1988 39 1 3.7612 -1.2616 3.0843 40 1 2.9220 -2.7452 2.5712 41 1 4.8569 -2.5262 4.9280 42 1 4.0391 -4.0294 4.4224 43 1 5.5734 -6.1886 4.3055 44 1 6.3371 -6.3778 5.9021 45 1 4.6203 -5.9226 5.7851 46 1 8.1006 -5.6657 5.6916 47 1 9.7886 -4.4814 3.5854 48 1 9.8878 -4.0629 5.3127 49 1 12.2640 -5.0364 4.4941 50 1 15.5588 -5.5663 4.4337 51 1 6.7086 -5.0961 2.7008 52 1 7.5680 -3.5432 2.4661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755103293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:46 Heat of formation + Delta-G solvation = -124.390424 kcal Electronic energy + Delta-G solvation = -29445.958586 eV Core-core repulsion = 25252.176443 eV Total energy + Delta-G solvation = -4193.782143 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.49532 -38.95873 -38.39834 -37.83948 -34.81260 -33.83776 -33.68299 -32.29940 -31.24105 -31.20580 -28.85317 -27.64830 -26.83357 -26.38393 -24.48810 -23.62758 -22.31659 -21.72220 -19.88526 -19.54609 -19.13626 -17.92784 -17.75787 -16.87635 -16.54782 -16.07115 -15.98131 -15.55044 -15.28398 -15.07527 -14.87849 -14.49878 -14.30448 -14.07931 -13.80755 -13.62491 -13.35219 -13.25783 -13.13171 -12.78349 -12.72429 -12.60574 -12.48368 -12.34091 -12.16049 -11.98065 -11.78467 -11.74002 -11.53360 -11.53086 -11.18102 -11.06001 -11.04465 -10.92781 -10.72859 -10.44600 -10.21898 -10.06481 -9.91661 -9.50674 -8.84432 -8.49624 -8.15629 -7.97135 -6.42133 -3.83153 2.41435 2.57083 3.19898 3.25865 3.30022 3.37271 3.89213 4.04994 4.14236 4.25270 4.35072 4.43507 4.54634 4.59312 4.67370 4.75045 4.76540 4.84833 5.05877 5.08223 5.12493 5.17691 5.20659 5.22027 5.27603 5.31514 5.33886 5.37542 5.42364 5.46721 5.52872 5.61587 5.71728 5.71975 5.75794 5.81024 5.82177 5.89688 5.92987 6.02222 6.09587 6.25034 6.31678 6.86544 7.13586 7.28597 7.54472 7.56839 7.93252 8.05090 8.60124 9.16951 9.53279 10.04365 10.75417 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023369 B = 0.001636 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.875804 B =17113.127349 C =17924.024842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.082 3.918 3 C -0.176 4.176 4 O -0.387 6.387 5 C 0.078 3.922 6 C -0.134 4.134 7 C 0.532 3.468 8 O -0.541 6.541 9 N -0.616 5.616 10 C 0.106 3.894 11 C -0.107 4.107 12 H 0.089 0.911 13 C -0.138 4.138 14 C 0.076 3.924 15 H 0.062 0.938 16 N -0.653 5.653 17 C 0.049 3.951 18 C 0.441 3.559 19 O -0.584 6.584 20 N -0.562 5.562 21 C -0.301 4.301 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.273 1.273 27 H -0.284 1.284 28 H -0.274 1.274 29 C 0.116 3.884 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.057 0.943 37 H 0.057 0.943 38 H 0.058 0.942 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.070 0.930 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.053 0.947 46 H 0.355 0.645 47 H 0.086 0.914 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.272 0.728 51 H 0.083 0.917 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.892 13.441 -2.946 29.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.024 3.976 3 C -0.234 4.234 4 O -0.307 6.307 5 C 0.001 3.999 6 C -0.174 4.174 7 C 0.321 3.679 8 O -0.419 6.419 9 N -0.351 5.351 10 C -0.018 4.018 11 C -0.126 4.126 12 H 0.108 0.892 13 C -0.196 4.196 14 C -0.036 4.036 15 H 0.080 0.920 16 N -0.288 5.288 17 C -0.084 4.084 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.199 1.199 29 C -0.007 4.007 30 H 0.082 0.918 31 H 0.088 0.912 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.088 0.912 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.088 0.912 45 H 0.072 0.928 46 H 0.177 0.823 47 H 0.105 0.895 48 H 0.063 0.937 49 H 0.226 0.774 50 H 0.082 0.918 51 H 0.101 0.899 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -25.886 12.588 -3.871 29.043 hybrid contribution 1.262 0.466 0.620 1.482 sum -24.623 13.054 -3.251 28.058 Atomic orbital electron populations 1.21867 0.93554 1.02734 1.02522 1.22075 0.94920 0.92463 0.88119 1.22309 1.01769 0.96723 1.02572 1.87838 1.36666 1.70154 1.35998 1.22150 0.85461 0.96020 0.96311 1.21437 0.94935 1.01164 0.99838 1.20022 0.86634 0.78374 0.82916 1.90739 1.64370 1.61397 1.25377 1.48405 1.22706 1.52373 1.11597 1.22160 0.97298 1.00103 0.82219 1.22400 0.94016 0.97323 0.98858 0.89231 1.21700 1.00860 0.93788 1.03215 1.22726 0.92494 0.93735 0.94604 0.91966 1.60011 1.02627 1.27885 1.38259 1.21772 0.88353 0.96408 1.01878 1.19754 0.83077 0.89683 0.84888 1.90522 1.74943 1.28000 1.53330 1.41855 1.04309 1.12688 1.61033 1.19657 0.87330 0.91549 1.44511 0.87946 1.25264 0.97435 0.97967 0.97205 1.69604 1.13276 1.23178 1.48172 0.85912 0.78399 0.80792 0.79080 1.19872 1.20981 1.19921 1.22330 0.83913 0.97399 0.97010 0.91779 0.91242 0.91969 0.92066 0.91621 0.91769 0.92342 0.92429 0.92378 0.88130 0.88096 0.91215 0.90857 0.91783 0.91159 0.92809 0.82257 0.89539 0.93688 0.77448 0.91803 0.89911 0.90521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.56 37.16 0.36 -0.50 16 2 C 0.08 0.59 3.34 -26.73 -0.09 0.50 16 3 C -0.18 -1.13 9.53 37.15 0.35 -0.77 16 4 O -0.39 -3.55 9.99 -35.23 -0.35 -3.90 16 5 C 0.08 0.72 5.04 37.16 0.19 0.91 16 6 C -0.13 -1.13 5.26 -27.88 -0.15 -1.28 16 7 C 0.53 6.27 7.85 -10.99 -0.09 6.18 16 8 O -0.54 -8.51 16.24 5.56 0.09 -8.42 16 9 N -0.62 -6.66 3.32 -170.38 -0.57 -7.22 16 10 C 0.11 0.82 6.06 -3.06 -0.02 0.80 16 11 C -0.11 -0.93 3.40 -88.79 -0.30 -1.23 16 12 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 13 C -0.14 -1.31 8.49 37.15 0.32 -0.99 16 14 C 0.08 0.87 3.19 -65.44 -0.21 0.66 16 15 H 0.06 0.70 7.83 -51.93 -0.41 0.29 16 16 N -0.65 -9.73 5.38 -105.59 -0.57 -10.30 16 17 C 0.05 0.83 6.03 -4.97 -0.03 0.80 16 18 C 0.44 10.20 7.82 -10.99 -0.09 10.11 16 19 O -0.58 -15.49 15.78 5.54 0.09 -15.40 16 20 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 21 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 22 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.49 13.05 55.50 0.72 -23.77 16 25 Si 0.93 21.03 29.55 -169.99 -5.02 16.00 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 C 0.12 1.47 6.29 -2.41 -0.02 1.46 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.42 7.79 -51.93 -0.40 0.02 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.06 0.41 7.87 -51.93 -0.41 0.00 16 37 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 38 H 0.06 0.57 8.04 -51.93 -0.42 0.15 16 39 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.43 8.14 -51.92 -0.42 0.00 16 42 H 0.07 0.48 7.85 -51.93 -0.41 0.07 16 43 H 0.06 0.70 7.42 -51.93 -0.39 0.32 16 44 H 0.07 0.76 6.75 -51.93 -0.35 0.41 16 45 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.36 5.35 6.72 -39.30 -0.26 5.09 16 47 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 48 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 49 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 50 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 51 H 0.08 1.16 7.69 -51.93 -0.40 0.77 16 52 H 0.08 1.08 8.03 -51.93 -0.42 0.66 16 LS Contribution 421.79 15.07 6.36 6.36 Total: -1.00 -32.98 421.79 -8.49 -41.47 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: -9.17 Total: 10.72 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: -0.01 Total: 8.66 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -0.47 Total: -55.50 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.17 Total: -27.71 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -32.98 -8.49 -41.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755103293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.916 kcal (2) G-P(sol) polarization free energy of solvation -32.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds