Wall clock time and date at job start Wed Apr 1 2020 01:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52993 * 109.47216 * 2 1 4 4 O 1.42901 * 109.46992 * 120.00007 * 2 1 3 5 5 C 1.42895 * 113.99948 * 149.99732 * 4 2 1 6 6 C 1.53006 * 109.47036 * 179.97438 * 5 4 2 7 7 C 1.50698 * 109.47184 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00025 * 0.02562 * 7 6 5 9 9 N 1.34776 * 120.00035 * 179.97438 * 7 6 5 10 10 C 1.47022 * 125.64861 * 0.03165 * 9 7 6 11 11 C 1.54324 * 107.27292 * 181.02155 * 10 9 7 12 12 H 1.08994 * 110.72112 * 140.55302 * 11 10 9 13 13 C 1.52993 * 110.71630 * 263.83021 * 11 10 9 14 14 C 1.55161 * 102.93965 * 22.19104 * 11 10 9 15 15 H 1.08999 * 111.00275 * 82.61407 * 14 11 10 16 16 N 1.46903 * 111.00017 * 206.42514 * 14 11 10 17 17 C 1.46903 * 110.99791 * 205.00116 * 16 14 11 18 18 C 1.50699 * 109.46894 * 180.02562 * 17 16 14 19 19 O 1.21295 * 120.00336 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99784 * 179.97438 * 18 17 16 21 21 C 1.37098 * 120.00063 * 179.97438 * 20 18 17 22 22 H 1.07998 * 120.00056 * 0.02562 * 21 20 18 23 23 C 1.38954 * 120.00058 * 180.02562 * 21 20 18 24 24 N 1.31412 * 119.99898 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 119.99939 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47068 * 60.00246 * 25 23 21 27 27 H 1.48495 * 109.47263 * 179.97438 * 25 23 21 28 28 H 1.48497 * 109.47401 * 300.00552 * 25 23 21 29 29 C 1.47425 * 125.64734 * 179.71911 * 9 7 6 30 30 H 1.08995 * 109.47108 * 300.00596 * 1 2 3 31 31 H 1.09000 * 109.46663 * 59.99980 * 1 2 3 32 32 H 1.09000 * 109.46840 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46892 * 239.99860 * 2 1 3 34 34 H 1.09001 * 109.47579 * 300.00100 * 3 2 1 35 35 H 1.09008 * 109.47407 * 59.99916 * 3 2 1 36 36 H 1.09004 * 109.47291 * 179.97438 * 3 2 1 37 37 H 1.09001 * 109.46798 * 60.00190 * 5 4 2 38 38 H 1.08993 * 109.47318 * 299.99656 * 5 4 2 39 39 H 1.09001 * 109.46801 * 300.00369 * 6 5 4 40 40 H 1.09001 * 109.46998 * 59.99965 * 6 5 4 41 41 H 1.09008 * 109.88051 * 300.43822 * 10 9 7 42 42 H 1.08997 * 109.88006 * 61.44452 * 10 9 7 43 43 H 1.09003 * 109.47655 * 58.54879 * 13 11 10 44 44 H 1.08999 * 109.47270 * 178.54416 * 13 11 10 45 45 H 1.09001 * 109.47563 * 298.54278 * 13 11 10 46 46 H 1.00893 * 111.00413 * 328.95571 * 16 14 11 47 47 H 1.09005 * 109.46519 * 300.00271 * 17 16 14 48 48 H 1.09000 * 109.47134 * 59.99865 * 17 16 14 49 49 H 0.97002 * 120.00177 * 0.02562 * 20 18 17 50 50 H 0.96999 * 120.00003 * 179.97438 * 24 23 21 51 51 H 1.08995 * 110.36838 * 274.74855 * 29 9 7 52 52 H 1.08998 * 110.36491 * 37.07464 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 3.2660 -1.3245 0.9886 6 6 3.6760 -2.0081 2.2946 7 6 5.0041 -2.6951 2.1066 8 8 5.5674 -2.6427 1.0338 9 7 5.5663 -3.3669 3.1309 10 6 4.9954 -3.5094 4.4782 11 6 5.9966 -4.3332 5.3152 12 1 6.0640 -3.9423 6.3304 13 6 5.6036 -5.8118 5.3279 14 6 7.3349 -4.1274 4.5576 15 1 7.8061 -3.1875 4.8453 16 7 8.2450 -5.2590 4.7796 17 6 9.6450 -4.8516 4.6006 18 6 10.5467 -6.0360 4.8352 19 8 10.0700 -7.1137 5.1227 20 7 11.8828 -5.8981 4.7244 21 6 12.7032 -6.9755 4.9384 22 1 12.2789 -7.9348 5.1952 23 6 14.0808 -6.8331 4.8247 24 7 14.5972 -5.6657 4.5127 25 14 15.1986 -8.3009 5.1169 26 1 14.8678 -9.3758 4.1471 27 1 16.6138 -7.8893 4.9351 28 1 15.0028 -8.8047 6.5000 29 6 6.8524 -4.0859 3.0839 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4424 0.0005 37 1 4.0199 -0.5874 0.7125 38 1 3.1808 -2.0707 0.1988 39 1 3.7612 -1.2616 3.0843 40 1 2.9220 -2.7452 2.5712 41 1 4.8569 -2.5262 4.9280 42 1 4.0391 -4.0294 4.4224 43 1 5.5734 -6.1886 4.3055 44 1 6.3371 -6.3778 5.9021 45 1 4.6203 -5.9226 5.7851 46 1 8.1006 -5.6657 5.6916 47 1 9.7886 -4.4814 3.5854 48 1 9.8878 -4.0629 5.3127 49 1 12.2640 -5.0364 4.4941 50 1 15.5588 -5.5663 4.4337 51 1 6.7086 -5.0961 2.7008 52 1 7.5680 -3.5432 2.4661 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755103293.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:45 Heat of formation + Delta-G solvation = -148.170456 kcal Electronic energy + Delta-G solvation = -29446.989766 eV Core-core repulsion = 25252.176443 eV Total energy + Delta-G solvation = -4194.813323 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.39198 -40.19869 -39.53039 -38.92897 -36.22686 -35.58461 -34.31823 -33.37890 -33.09516 -31.94173 -29.91245 -28.15179 -27.93597 -27.51996 -26.02305 -24.67894 -23.17184 -22.27553 -21.16254 -20.76597 -20.22854 -19.88117 -18.58525 -17.73777 -17.65620 -17.24521 -16.88683 -16.80923 -16.39131 -16.29516 -15.96474 -15.70096 -15.50908 -15.34597 -14.98772 -14.67714 -14.33730 -14.16071 -13.98802 -13.86294 -13.59513 -13.52612 -13.38706 -13.27318 -13.09874 -13.05360 -13.02611 -12.83625 -12.75690 -12.43386 -12.39283 -12.14952 -12.12945 -11.99695 -11.75078 -11.62344 -11.58303 -11.49955 -11.02756 -10.57150 -10.34857 -10.02004 -9.73611 -9.38931 -8.46711 -5.95664 1.39736 1.41750 1.52385 1.52690 1.74145 2.04836 2.29007 2.68739 2.94561 3.20644 3.30886 3.52567 3.56735 3.74248 3.92493 3.96516 4.02373 4.12815 4.16785 4.24403 4.26372 4.29608 4.31777 4.44330 4.47307 4.54417 4.57858 4.64450 4.72810 4.75565 4.77152 4.78025 4.89576 4.90719 4.92936 4.94989 4.97895 5.05170 5.19164 5.26187 5.28319 5.33507 5.40524 5.52938 5.87523 6.07932 6.22551 6.36562 6.47739 6.59365 7.04226 7.12048 7.55767 8.10578 8.70379 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023369 B = 0.001636 C = 0.001562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1197.875804 B =17113.127349 C =17924.024842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.071 3.929 3 C -0.174 4.174 4 O -0.394 6.394 5 C 0.080 3.920 6 C -0.121 4.121 7 C 0.527 3.473 8 O -0.591 6.591 9 N -0.614 5.614 10 C 0.104 3.896 11 C -0.098 4.098 12 H 0.116 0.884 13 C -0.136 4.136 14 C 0.079 3.921 15 H 0.075 0.925 16 N -0.666 5.666 17 C 0.064 3.936 18 C 0.439 3.561 19 O -0.621 6.621 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.080 0.920 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.273 1.273 27 H -0.271 1.271 28 H -0.270 1.270 29 C 0.117 3.883 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.064 0.936 36 H 0.048 0.952 37 H 0.046 0.954 38 H 0.046 0.954 39 H 0.123 0.877 40 H 0.121 0.879 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.041 0.959 44 H 0.052 0.948 45 H 0.078 0.922 46 H 0.355 0.645 47 H 0.095 0.905 48 H 0.072 0.928 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.061 0.939 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.530 14.716 -1.692 31.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.014 3.986 3 C -0.231 4.231 4 O -0.314 6.314 5 C 0.003 3.997 6 C -0.161 4.161 7 C 0.317 3.683 8 O -0.472 6.472 9 N -0.347 5.347 10 C -0.018 4.018 11 C -0.117 4.117 12 H 0.134 0.866 13 C -0.193 4.193 14 C -0.032 4.032 15 H 0.093 0.907 16 N -0.300 5.300 17 C -0.069 4.069 18 C 0.226 3.774 19 O -0.507 6.507 20 N -0.211 5.211 21 C -0.465 4.465 22 H 0.098 0.902 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.196 1.196 28 H -0.195 1.195 29 C -0.007 4.007 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.078 0.922 33 H 0.078 0.922 34 H 0.099 0.901 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.064 0.936 39 H 0.141 0.859 40 H 0.140 0.860 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.060 0.940 44 H 0.071 0.929 45 H 0.097 0.903 46 H 0.177 0.823 47 H 0.113 0.887 48 H 0.089 0.911 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.079 0.921 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -27.552 13.888 -2.592 30.963 hybrid contribution 1.701 0.066 0.197 1.713 sum -25.851 13.954 -2.395 29.474 Atomic orbital electron populations 1.21866 0.92251 1.02852 1.03356 1.22303 0.95985 0.92737 0.87552 1.22291 1.01134 0.96337 1.03348 1.87817 1.36322 1.70303 1.36954 1.22049 0.85454 0.95519 0.96662 1.21390 0.93085 1.01748 0.99857 1.20655 0.87406 0.77990 0.82232 1.90717 1.65840 1.63264 1.27412 1.48468 1.21946 1.51458 1.12831 1.22423 0.97428 1.01815 0.80142 1.22426 0.92166 0.97040 1.00029 0.86576 1.21668 1.01764 0.94163 1.01722 1.22734 0.93328 0.92931 0.94194 0.90695 1.59920 1.01851 1.29826 1.38428 1.21600 0.88353 0.93888 1.03017 1.20812 0.82969 0.90926 0.82670 1.90490 1.75559 1.30181 1.54471 1.41936 1.05050 1.12279 1.61794 1.19650 0.88512 0.91723 1.46609 0.90186 1.26044 0.98160 1.00682 0.96352 1.69670 1.13841 1.24516 1.48099 0.84985 0.76898 0.77508 0.78928 1.19872 1.19559 1.19483 1.22146 0.84796 0.96165 0.97591 0.91772 0.89582 0.92206 0.92201 0.90102 0.91736 0.93312 0.93568 0.93572 0.85883 0.86046 0.88252 0.88822 0.93975 0.92875 0.90339 0.82291 0.88713 0.91055 0.77052 0.91325 0.92075 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.56 71.98 0.69 -0.76 16 2 C 0.07 0.97 3.34 30.59 0.10 1.07 16 3 C -0.17 -2.04 9.53 71.98 0.69 -1.35 16 4 O -0.39 -6.73 9.99 -148.98 -1.49 -8.22 16 5 C 0.08 1.45 5.04 71.98 0.36 1.81 16 6 C -0.12 -1.79 5.26 29.85 0.16 -1.63 16 7 C 0.53 11.99 7.85 87.66 0.69 12.67 16 8 O -0.59 -19.11 16.24 -3.04 -0.05 -19.16 16 9 N -0.61 -12.36 3.32 -811.36 -2.70 -15.05 16 10 C 0.10 1.23 6.06 86.73 0.53 1.76 16 11 C -0.10 -1.41 3.40 -9.61 -0.03 -1.45 16 12 H 0.12 1.17 8.14 -2.39 -0.02 1.15 16 13 C -0.14 -2.33 8.49 71.98 0.61 -1.72 16 14 C 0.08 1.69 3.19 46.39 0.15 1.84 16 15 H 0.08 1.48 7.83 -2.39 -0.02 1.46 16 16 N -0.67 -19.49 5.38 -487.98 -2.63 -22.12 16 17 C 0.06 2.14 6.03 85.56 0.52 2.66 16 18 C 0.44 20.67 7.82 87.66 0.69 21.35 16 19 O -0.62 -33.84 15.78 -3.07 -0.05 -33.89 16 20 N -0.57 -29.48 5.29 -306.98 -1.62 -31.10 16 21 C -0.34 -19.10 9.68 84.04 0.81 -18.29 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 24 N -0.92 -49.97 13.05 21.66 0.28 -49.68 16 25 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 26 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 27 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 29 C 0.12 2.96 6.29 86.93 0.55 3.50 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.81 7.79 -2.39 -0.02 0.79 16 34 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 36 H 0.05 0.66 7.87 -2.39 -0.02 0.64 16 37 H 0.05 0.92 7.83 -2.39 -0.02 0.90 16 38 H 0.05 0.92 8.04 -2.39 -0.02 0.90 16 39 H 0.12 1.30 8.14 -2.39 -0.02 1.28 16 40 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 42 H 0.09 0.81 7.85 -2.39 -0.02 0.79 16 43 H 0.04 0.90 7.42 -2.39 -0.02 0.89 16 44 H 0.05 1.10 6.75 -2.39 -0.02 1.09 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 46 H 0.36 10.51 6.72 -89.70 -0.60 9.90 16 47 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 48 H 0.07 2.04 8.09 -2.39 -0.02 2.03 16 49 H 0.40 19.41 7.90 -92.71 -0.73 18.68 16 50 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 51 H 0.06 1.80 7.69 -2.39 -0.02 1.78 16 52 H 0.06 1.62 8.03 -2.39 -0.02 1.60 16 Total: -1.00 -74.23 421.79 0.32 -73.91 By element: Atomic # 1 Polarization: 39.38 SS G_CDS: -0.42 Total: 38.96 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 6.96 Total: 21.25 kcal Atomic # 7 Polarization: -111.29 SS G_CDS: -6.66 Total: -117.96 kcal Atomic # 8 Polarization: -59.68 SS G_CDS: -1.59 Total: -61.27 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -74.23 0.32 -73.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755103293.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.258 kcal (2) G-P(sol) polarization free energy of solvation -74.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds