Wall clock time and date at job start Wed Apr 1 2020 01:26:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47048 * 2 1 4 4 O 1.42895 * 109.46943 * 120.00726 * 2 1 3 5 5 C 1.42897 * 114.00566 * 89.99577 * 4 2 1 6 6 C 1.52995 * 109.47321 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47304 * 179.97438 * 6 5 4 8 8 O 1.21277 * 119.99819 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99958 * 180.02562 * 7 6 5 10 10 C 1.48154 * 127.83692 * 180.02562 * 9 7 6 11 11 C 1.54389 * 104.61471 * 140.39518 * 10 9 7 12 12 H 1.08992 * 110.34161 * 264.99304 * 11 10 9 13 13 N 1.46906 * 110.33898 * 142.74088 * 11 10 9 14 14 C 1.46899 * 111.00283 * 89.45952 * 13 11 10 15 15 C 1.50696 * 109.46979 * 180.02562 * 14 13 11 16 16 O 1.21287 * 120.00222 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99654 * 180.02562 * 15 14 13 18 18 C 1.37094 * 119.99992 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99938 * 0.02562 * 18 17 15 20 20 C 1.38955 * 120.00175 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99780 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00036 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46963 * 90.00038 * 22 20 18 24 24 H 1.48494 * 109.47086 * 210.00248 * 22 20 18 25 25 H 1.48500 * 109.47291 * 330.00268 * 22 20 18 26 26 C 1.54281 * 104.96192 * 23.87031 * 11 10 9 27 27 H 1.09002 * 110.34302 * 118.86887 * 26 11 10 28 28 C 1.53006 * 110.33853 * 241.02139 * 26 11 10 29 29 C 1.48144 * 127.84197 * 359.97438 * 9 7 6 30 30 H 1.09000 * 109.47240 * 59.99274 * 1 2 3 31 31 H 1.08995 * 109.47816 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47070 * 299.99905 * 1 2 3 33 33 H 1.09004 * 109.46578 * 240.00116 * 2 1 3 34 34 H 1.09005 * 109.46916 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47453 * 299.99780 * 3 2 1 36 36 H 1.08997 * 109.46942 * 60.00650 * 3 2 1 37 37 H 1.09010 * 109.47012 * 59.99783 * 5 4 2 38 38 H 1.09001 * 109.47248 * 300.00203 * 5 4 2 39 39 H 1.09003 * 109.47228 * 59.99913 * 6 5 4 40 40 H 1.09001 * 109.47473 * 300.00492 * 6 5 4 41 41 H 1.09000 * 110.40147 * 21.60948 * 10 9 7 42 42 H 1.08996 * 110.50337 * 259.22862 * 10 9 7 43 43 H 1.00893 * 110.99788 * 213.41522 * 13 11 10 44 44 H 1.08998 * 109.46922 * 300.00502 * 14 13 11 45 45 H 1.09003 * 109.47052 * 59.99940 * 14 13 11 46 46 H 0.97000 * 120.00156 * 359.97438 * 17 15 14 47 47 H 0.96998 * 119.99745 * 180.02562 * 21 20 18 48 48 H 1.08993 * 109.47190 * 58.52788 * 28 26 11 49 49 H 1.09001 * 109.46854 * 178.52675 * 28 26 11 50 50 H 1.08998 * 109.47051 * 298.52222 * 28 26 11 51 51 H 1.08999 * 110.40697 * 100.81942 * 29 9 7 52 52 H 1.08998 * 110.40769 * 338.39232 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.1999 -2.0783 0.9885 6 6 2.7089 -2.6926 2.2940 7 6 2.9126 -4.1740 2.1063 8 8 2.6745 -4.6877 1.0337 9 7 3.3592 -4.9279 3.1302 10 6 3.6196 -6.3863 3.1390 11 6 4.9118 -6.5463 3.9685 12 1 5.7815 -6.5798 3.3124 13 7 4.8438 -7.7621 4.7904 14 6 5.3731 -8.9216 4.0602 15 6 5.2864 -10.1471 4.9329 16 8 4.8292 -10.0628 6.0531 17 7 5.7180 -11.3366 4.4689 18 6 5.6397 -12.4515 5.2629 19 1 5.2318 -12.3766 6.2602 20 6 6.0841 -13.6780 4.7844 21 7 6.5799 -13.7692 3.5708 22 14 5.9780 -15.1968 5.8667 23 1 4.6705 -15.8672 5.6520 24 1 7.0771 -16.1319 5.5165 25 1 6.1020 -14.7988 7.2919 26 6 4.9659 -5.2936 4.8674 27 1 4.9419 -5.5802 5.9187 28 6 6.2254 -4.4781 4.5678 29 6 3.7022 -4.4861 4.5021 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.8932 -0.5138 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 2.9319 -2.2468 0.1984 38 1 1.2536 -2.5434 0.7123 39 1 1.9774 -2.5241 3.0843 40 1 3.6553 -2.2274 2.5698 41 1 3.7722 -6.7512 2.1233 42 1 2.7951 -6.9185 3.6134 43 1 5.3285 -7.6341 5.6660 44 1 4.7874 -9.0788 3.1544 45 1 6.4138 -8.7384 3.7927 46 1 6.0840 -11.4040 3.5731 47 1 6.8898 -14.6254 3.2366 48 1 6.2293 -4.1884 3.5171 49 1 6.2361 -3.5841 5.1913 50 1 7.1079 -5.0809 4.7819 51 1 2.8901 -4.7195 5.1907 52 1 3.9171 -3.4176 4.5147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755103295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:52 Heat of formation + Delta-G solvation = -123.974088 kcal Electronic energy + Delta-G solvation = -29433.074628 eV Core-core repulsion = 25239.310539 eV Total energy + Delta-G solvation = -4193.764089 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.41621 -38.94252 -38.38639 -37.82466 -34.74398 -33.82314 -33.68271 -32.47636 -31.29201 -31.20544 -28.86624 -27.65163 -26.79671 -26.44511 -24.48647 -23.57618 -22.14040 -21.72573 -20.33325 -19.52374 -19.08368 -17.89246 -17.75077 -16.79015 -16.50241 -16.15524 -15.86658 -15.58681 -15.32846 -14.99420 -14.82768 -14.55439 -14.22387 -13.99012 -13.86294 -13.59971 -13.47209 -13.31105 -13.18666 -12.92892 -12.82389 -12.64326 -12.37631 -12.29948 -12.13388 -11.99510 -11.75265 -11.63366 -11.54154 -11.52220 -11.21438 -11.16084 -11.05783 -11.02177 -10.82274 -10.39939 -10.22435 -10.06689 -9.92266 -9.51794 -8.93161 -8.48704 -8.14829 -7.97208 -6.42362 -3.83337 2.41217 2.55546 3.17649 3.26395 3.31885 3.37166 3.89177 4.05361 4.19939 4.27392 4.34120 4.43149 4.54995 4.61053 4.65260 4.72464 4.76289 4.84444 5.03568 5.10643 5.17228 5.17951 5.20826 5.23167 5.26336 5.28389 5.35281 5.37216 5.41957 5.45585 5.51093 5.52420 5.63835 5.70669 5.75340 5.78611 5.80742 5.81022 5.85416 5.96296 5.97136 6.10194 6.27183 6.86091 7.15013 7.34356 7.54516 7.57890 7.92825 8.05164 8.59996 9.16910 9.53230 10.04270 10.75272 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026345 B = 0.001611 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.579974 B =17377.604594 C =17914.037592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.082 3.918 3 C -0.150 4.150 4 O -0.387 6.387 5 C 0.078 3.922 6 C -0.134 4.134 7 C 0.538 3.462 8 O -0.544 6.544 9 N -0.620 5.620 10 C 0.113 3.887 11 C 0.076 3.924 12 H 0.058 0.942 13 N -0.658 5.658 14 C 0.049 3.951 15 C 0.441 3.559 16 O -0.584 6.584 17 N -0.563 5.563 18 C -0.300 4.300 19 H 0.103 0.897 20 C 0.023 3.977 21 N -0.901 5.901 22 Si 0.930 3.070 23 H -0.278 1.278 24 H -0.284 1.284 25 H -0.270 1.270 26 C -0.111 4.111 27 H 0.098 0.902 28 C -0.144 4.144 29 C 0.107 3.893 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.058 0.942 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.354 0.646 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.392 0.608 47 H 0.272 0.728 48 H 0.055 0.945 49 H 0.060 0.940 50 H 0.059 0.941 51 H 0.079 0.921 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.131 28.574 -5.448 29.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.024 3.976 3 C -0.207 4.207 4 O -0.306 6.306 5 C 0.001 3.999 6 C -0.174 4.174 7 C 0.327 3.673 8 O -0.421 6.421 9 N -0.355 5.355 10 C -0.010 4.010 11 C -0.035 4.035 12 H 0.076 0.924 13 N -0.292 5.292 14 C -0.084 4.084 15 C 0.226 3.774 16 O -0.468 6.468 17 N -0.199 5.199 18 C -0.430 4.430 19 H 0.121 0.879 20 C -0.179 4.179 21 N -0.542 5.542 22 Si 0.757 3.243 23 H -0.204 1.204 24 H -0.209 1.209 25 H -0.194 1.194 26 C -0.130 4.130 27 H 0.116 0.884 28 C -0.202 4.202 29 C -0.016 4.016 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.175 0.825 44 H 0.104 0.896 45 H 0.063 0.937 46 H 0.226 0.774 47 H 0.081 0.919 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.078 0.922 51 H 0.098 0.902 52 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.137 28.200 -5.443 29.369 hybrid contribution 1.111 -0.937 -0.264 1.477 sum -5.026 27.263 -5.707 28.304 Atomic orbital electron populations 1.22310 0.95946 1.02546 1.02580 1.22073 0.93698 0.93689 0.88105 1.21866 1.01818 0.94464 1.02533 1.87838 1.86753 1.20048 1.36001 1.22146 1.00553 0.80938 0.96274 1.21429 1.04403 0.91651 0.99902 1.19969 0.76520 0.88185 0.82628 1.90733 1.51500 1.74451 1.25457 1.48920 1.65282 1.09707 1.11568 1.22460 0.97788 0.79815 1.00938 1.22499 0.96852 0.89578 0.94566 0.92365 1.60111 1.61655 1.01129 1.06303 1.21757 0.98160 0.90968 0.97488 1.19765 0.84680 0.84400 0.88552 1.90520 1.50056 1.85481 1.20750 1.41865 1.54795 1.06613 1.16652 1.19707 1.38919 0.85307 0.99065 0.87896 1.25268 0.96828 0.99305 0.96498 1.69615 1.41793 1.26672 1.16138 0.85852 0.77826 0.80592 0.79986 1.20378 1.20944 1.19422 1.22325 0.94825 0.94943 1.00922 0.88428 1.21867 0.96792 0.99817 1.01709 1.22495 0.96937 0.99203 0.82965 0.91632 0.92339 0.91748 0.92085 0.91980 0.91240 0.91765 0.92421 0.92406 0.88068 0.88113 0.90190 0.89387 0.82529 0.89566 0.93689 0.77446 0.91855 0.92599 0.92138 0.92162 0.90245 0.90118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.12 9.53 37.16 0.35 -0.77 16 2 C 0.08 0.59 3.34 -26.73 -0.09 0.50 16 3 C -0.15 -0.85 9.56 37.16 0.36 -0.49 16 4 O -0.39 -3.52 9.99 -35.23 -0.35 -3.87 16 5 C 0.08 0.72 5.04 37.15 0.19 0.90 16 6 C -0.13 -1.13 5.05 -27.88 -0.14 -1.27 16 7 C 0.54 6.30 7.91 -10.99 -0.09 6.21 16 8 O -0.54 -8.45 16.25 5.56 0.09 -8.36 16 9 N -0.62 -6.72 3.32 -169.33 -0.56 -7.28 16 10 C 0.11 1.42 6.75 -2.40 -0.02 1.40 16 11 C 0.08 0.89 3.05 -66.31 -0.20 0.69 16 12 H 0.06 0.69 7.39 -51.93 -0.38 0.30 16 13 N -0.66 -9.84 5.91 -106.51 -0.63 -10.47 16 14 C 0.05 0.84 6.02 -4.98 -0.03 0.81 16 15 C 0.44 10.22 7.82 -10.99 -0.09 10.13 16 16 O -0.58 -15.53 15.78 5.55 0.09 -15.44 16 17 N -0.56 -14.17 5.29 -10.96 -0.06 -14.23 16 18 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 19 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 20 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 21 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 22 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 23 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C -0.11 -0.98 3.33 -89.24 -0.30 -1.28 16 27 H 0.10 0.86 7.52 -51.93 -0.39 0.47 16 28 C -0.14 -1.10 8.91 37.16 0.33 -0.77 16 29 C 0.11 0.87 6.46 -2.43 -0.02 0.85 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.40 7.87 -51.93 -0.41 -0.01 16 32 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 33 H 0.06 0.42 7.79 -51.93 -0.40 0.01 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.06 0.56 8.04 -51.92 -0.42 0.14 16 38 H 0.06 0.57 7.83 -51.93 -0.41 0.16 16 39 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.10 0.70 7.95 -51.93 -0.41 0.29 16 41 H 0.08 1.10 7.88 -51.93 -0.41 0.69 16 42 H 0.09 1.21 8.06 -51.93 -0.42 0.79 16 43 H 0.35 5.34 7.75 -39.30 -0.30 5.04 16 44 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 45 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 46 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 47 H 0.27 6.99 8.31 -40.82 -0.34 6.66 16 48 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 49 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 51 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 52 H 0.08 0.48 7.02 -51.93 -0.36 0.11 16 LS Contribution 424.51 15.07 6.40 6.40 Total: -1.00 -33.06 424.51 -8.53 -41.59 By element: Atomic # 1 Polarization: 19.74 SS G_CDS: -9.22 Total: 10.52 kcal Atomic # 6 Polarization: 8.91 SS G_CDS: 0.02 Total: 8.93 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.53 Total: -55.76 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.17 Total: -27.67 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.40 Total: 6.40 kcal Total: -33.06 -8.53 -41.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755103295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.389 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.585 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds