Wall clock time and date at job start Wed Apr 1 2020 01:26:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47048 * 2 1 4 4 O 1.42895 * 109.46943 * 120.00726 * 2 1 3 5 5 C 1.42897 * 114.00566 * 89.99577 * 4 2 1 6 6 C 1.52995 * 109.47321 * 179.97438 * 5 4 2 7 7 C 1.50705 * 109.47304 * 179.97438 * 6 5 4 8 8 O 1.21277 * 119.99819 * 0.02562 * 7 6 5 9 9 N 1.34771 * 119.99958 * 180.02562 * 7 6 5 10 10 C 1.48154 * 127.83692 * 180.02562 * 9 7 6 11 11 C 1.54389 * 104.61471 * 140.39518 * 10 9 7 12 12 H 1.08992 * 110.34161 * 264.99304 * 11 10 9 13 13 N 1.46906 * 110.33898 * 142.74088 * 11 10 9 14 14 C 1.46899 * 111.00283 * 89.45952 * 13 11 10 15 15 C 1.50696 * 109.46979 * 180.02562 * 14 13 11 16 16 O 1.21287 * 120.00222 * 359.97438 * 15 14 13 17 17 N 1.34781 * 119.99654 * 180.02562 * 15 14 13 18 18 C 1.37094 * 119.99992 * 179.97438 * 17 15 14 19 19 H 1.08003 * 119.99938 * 0.02562 * 18 17 15 20 20 C 1.38955 * 120.00175 * 179.97438 * 18 17 15 21 21 N 1.31415 * 119.99780 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 120.00036 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.46963 * 90.00038 * 22 20 18 24 24 H 1.48494 * 109.47086 * 210.00248 * 22 20 18 25 25 H 1.48500 * 109.47291 * 330.00268 * 22 20 18 26 26 C 1.54281 * 104.96192 * 23.87031 * 11 10 9 27 27 H 1.09002 * 110.34302 * 118.86887 * 26 11 10 28 28 C 1.53006 * 110.33853 * 241.02139 * 26 11 10 29 29 C 1.48144 * 127.84197 * 359.97438 * 9 7 6 30 30 H 1.09000 * 109.47240 * 59.99274 * 1 2 3 31 31 H 1.08995 * 109.47816 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47070 * 299.99905 * 1 2 3 33 33 H 1.09004 * 109.46578 * 240.00116 * 2 1 3 34 34 H 1.09005 * 109.46916 * 180.02562 * 3 2 1 35 35 H 1.08994 * 109.47453 * 299.99780 * 3 2 1 36 36 H 1.08997 * 109.46942 * 60.00650 * 3 2 1 37 37 H 1.09010 * 109.47012 * 59.99783 * 5 4 2 38 38 H 1.09001 * 109.47248 * 300.00203 * 5 4 2 39 39 H 1.09003 * 109.47228 * 59.99913 * 6 5 4 40 40 H 1.09001 * 109.47473 * 300.00492 * 6 5 4 41 41 H 1.09000 * 110.40147 * 21.60948 * 10 9 7 42 42 H 1.08996 * 110.50337 * 259.22862 * 10 9 7 43 43 H 1.00893 * 110.99788 * 213.41522 * 13 11 10 44 44 H 1.08998 * 109.46922 * 300.00502 * 14 13 11 45 45 H 1.09003 * 109.47052 * 59.99940 * 14 13 11 46 46 H 0.97000 * 120.00156 * 359.97438 * 17 15 14 47 47 H 0.96998 * 119.99745 * 180.02562 * 21 20 18 48 48 H 1.08993 * 109.47190 * 58.52788 * 28 26 11 49 49 H 1.09001 * 109.46854 * 178.52675 * 28 26 11 50 50 H 1.08998 * 109.47051 * 298.52222 * 28 26 11 51 51 H 1.08999 * 110.40697 * 100.81942 * 29 9 7 52 52 H 1.08998 * 110.40769 * 338.39232 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6738 1.1667 5 6 2.1999 -2.0783 0.9885 6 6 2.7089 -2.6926 2.2940 7 6 2.9126 -4.1740 2.1063 8 8 2.6745 -4.6877 1.0337 9 7 3.3592 -4.9279 3.1302 10 6 3.6196 -6.3863 3.1390 11 6 4.9118 -6.5463 3.9685 12 1 5.7815 -6.5798 3.3124 13 7 4.8438 -7.7621 4.7904 14 6 5.3731 -8.9216 4.0602 15 6 5.2864 -10.1471 4.9329 16 8 4.8292 -10.0628 6.0531 17 7 5.7180 -11.3366 4.4689 18 6 5.6397 -12.4515 5.2629 19 1 5.2318 -12.3766 6.2602 20 6 6.0841 -13.6780 4.7844 21 7 6.5799 -13.7692 3.5708 22 14 5.9780 -15.1968 5.8667 23 1 4.6705 -15.8672 5.6520 24 1 7.0771 -16.1319 5.5165 25 1 6.1020 -14.7988 7.2919 26 6 4.9659 -5.2936 4.8674 27 1 4.9419 -5.5802 5.9187 28 6 6.2254 -4.4781 4.5678 29 6 3.7022 -4.4861 4.5021 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.8932 -0.5138 -0.8901 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6767 1.9562 0.8900 37 1 2.9319 -2.2468 0.1984 38 1 1.2536 -2.5434 0.7123 39 1 1.9774 -2.5241 3.0843 40 1 3.6553 -2.2274 2.5698 41 1 3.7722 -6.7512 2.1233 42 1 2.7951 -6.9185 3.6134 43 1 5.3285 -7.6341 5.6660 44 1 4.7874 -9.0788 3.1544 45 1 6.4138 -8.7384 3.7927 46 1 6.0840 -11.4040 3.5731 47 1 6.8898 -14.6254 3.2366 48 1 6.2293 -4.1884 3.5171 49 1 6.2361 -3.5841 5.1913 50 1 7.1079 -5.0809 4.7819 51 1 2.8901 -4.7195 5.1907 52 1 3.9171 -3.4176 4.5147 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755103295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:26:51 Heat of formation + Delta-G solvation = -147.831761 kcal Electronic energy + Delta-G solvation = -29434.109175 eV Core-core repulsion = 25239.310539 eV Total energy + Delta-G solvation = -4194.798636 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.32220 -40.19546 -39.51396 -38.90768 -36.21032 -35.54222 -34.31613 -33.40675 -33.17954 -31.98493 -29.96069 -28.14643 -27.91981 -27.47478 -26.08031 -24.54816 -23.05362 -22.27461 -21.36852 -20.92152 -20.24688 -19.85658 -18.55263 -17.83601 -17.40808 -17.27880 -16.90337 -16.73069 -16.48392 -16.27340 -15.95539 -15.70523 -15.48987 -15.22639 -15.02610 -14.65117 -14.39553 -14.17375 -14.09798 -13.84758 -13.61071 -13.49832 -13.45998 -13.36176 -13.08883 -12.95929 -12.87386 -12.78105 -12.71234 -12.42054 -12.38041 -12.13307 -12.12726 -11.95512 -11.94395 -11.69174 -11.61174 -11.50826 -11.02549 -10.57189 -10.35374 -10.02179 -9.84759 -9.39189 -8.46941 -5.95904 1.38135 1.42003 1.51787 1.54736 1.72296 2.04356 2.28875 2.69125 2.92012 3.20420 3.37918 3.50751 3.57930 3.75182 3.91884 3.96280 4.00867 4.12906 4.16697 4.26142 4.29675 4.29922 4.34434 4.43023 4.46937 4.50975 4.55868 4.61388 4.70389 4.76063 4.78232 4.79490 4.87158 4.90819 4.91952 4.93493 4.97107 4.99627 5.10719 5.22378 5.28364 5.33662 5.36875 5.40900 5.88065 6.07840 6.22842 6.36976 6.51418 6.58997 7.02981 7.11907 7.55449 8.10062 8.70414 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026345 B = 0.001611 C = 0.001563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.579974 B =17377.604594 C =17914.037592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.072 3.928 3 C -0.146 4.146 4 O -0.394 6.394 5 C 0.081 3.919 6 C -0.123 4.123 7 C 0.534 3.466 8 O -0.591 6.591 9 N -0.618 5.618 10 C 0.113 3.887 11 C 0.081 3.919 12 H 0.061 0.939 13 N -0.667 5.667 14 C 0.064 3.936 15 C 0.439 3.561 16 O -0.620 6.620 17 N -0.574 5.574 18 C -0.335 4.335 19 H 0.081 0.919 20 C -0.013 4.013 21 N -0.921 5.921 22 Si 0.994 3.006 23 H -0.272 1.272 24 H -0.271 1.271 25 H -0.271 1.271 26 C -0.105 4.105 27 H 0.102 0.898 28 C -0.139 4.139 29 C 0.107 3.893 30 H 0.080 0.920 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.085 0.915 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.062 0.938 42 H 0.072 0.928 43 H 0.353 0.647 44 H 0.096 0.904 45 H 0.068 0.932 46 H 0.396 0.604 47 H 0.277 0.723 48 H 0.051 0.949 49 H 0.082 0.918 50 H 0.054 0.946 51 H 0.085 0.915 52 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.724 30.460 -4.974 31.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.015 3.985 3 C -0.203 4.203 4 O -0.314 6.314 5 C 0.004 3.996 6 C -0.162 4.162 7 C 0.325 3.675 8 O -0.472 6.472 9 N -0.351 5.351 10 C -0.011 4.011 11 C -0.030 4.030 12 H 0.079 0.921 13 N -0.301 5.301 14 C -0.068 4.068 15 C 0.227 3.773 16 O -0.506 6.506 17 N -0.211 5.211 18 C -0.464 4.464 19 H 0.099 0.901 20 C -0.213 4.213 21 N -0.562 5.562 22 Si 0.817 3.183 23 H -0.198 1.198 24 H -0.196 1.196 25 H -0.196 1.196 26 C -0.124 4.124 27 H 0.120 0.880 28 C -0.197 4.197 29 C -0.015 4.015 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.104 0.896 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.080 0.920 42 H 0.090 0.910 43 H 0.174 0.826 44 H 0.114 0.886 45 H 0.086 0.914 46 H 0.229 0.771 47 H 0.087 0.913 48 H 0.070 0.930 49 H 0.101 0.899 50 H 0.073 0.927 51 H 0.103 0.897 52 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.719 30.119 -4.966 31.057 hybrid contribution 0.947 -1.469 -0.431 1.800 sum -4.772 28.650 -5.397 29.541 Atomic orbital electron populations 1.22295 0.95409 1.02121 1.03329 1.22301 0.94254 0.94420 0.87567 1.21864 1.01704 0.93424 1.03333 1.87817 1.86918 1.19696 1.36990 1.22044 0.99725 0.81251 0.96603 1.21390 1.06028 0.88884 0.99897 1.20587 0.75548 0.89452 0.81941 1.90711 1.53549 1.75522 1.27387 1.48977 1.64651 1.08829 1.12648 1.22301 0.97773 0.81165 0.99879 1.22497 0.96271 0.89477 0.94738 0.92064 1.60059 1.61701 1.01726 1.06629 1.21586 0.99900 0.88989 0.96374 1.20788 0.82546 0.85382 0.88596 1.90487 1.51171 1.86281 1.22703 1.41946 1.55578 1.06917 1.16641 1.19692 1.40724 0.87046 0.98953 0.90135 1.26054 0.95887 1.01563 0.97767 1.69679 1.41752 1.27642 1.17106 0.84916 0.78240 0.77048 0.78071 1.19789 1.19578 1.19567 1.22323 0.96045 0.93648 1.00404 0.88005 1.21836 0.95614 1.00312 1.01914 1.22708 0.96661 1.00919 0.81210 0.90084 0.93340 0.91801 0.92104 0.92144 0.89578 0.91832 0.93344 0.93655 0.86216 0.85820 0.91971 0.90951 0.82564 0.88599 0.91417 0.77072 0.91331 0.92970 0.89924 0.92658 0.89656 0.86924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 9.53 71.98 0.69 -1.36 16 2 C 0.07 0.96 3.34 30.59 0.10 1.06 16 3 C -0.15 -1.42 9.56 71.98 0.69 -0.73 16 4 O -0.39 -6.68 9.99 -148.98 -1.49 -8.16 16 5 C 0.08 1.44 5.04 71.98 0.36 1.80 16 6 C -0.12 -1.81 5.05 29.85 0.15 -1.66 16 7 C 0.53 12.07 7.91 87.66 0.69 12.76 16 8 O -0.59 -18.72 16.25 -3.02 -0.05 -18.77 16 9 N -0.62 -12.61 3.32 -808.03 -2.68 -15.29 16 10 C 0.11 2.81 6.75 86.53 0.58 3.39 16 11 C 0.08 1.80 3.05 45.82 0.14 1.93 16 12 H 0.06 1.36 7.39 -2.39 -0.02 1.34 16 13 N -0.67 -19.53 5.91 -490.90 -2.90 -22.44 16 14 C 0.06 2.16 6.02 85.56 0.52 2.67 16 15 C 0.44 20.67 7.82 87.66 0.69 21.36 16 16 O -0.62 -33.68 15.78 -3.05 -0.05 -33.73 16 17 N -0.57 -29.48 5.29 -306.98 -1.62 -31.10 16 18 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 19 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 20 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 21 N -0.92 -49.99 13.05 21.67 0.28 -49.71 16 22 Si 0.99 42.98 29.55 68.60 2.03 45.01 16 23 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 26 C -0.10 -1.61 3.33 -9.90 -0.03 -1.64 16 27 H 0.10 1.55 7.52 -2.39 -0.02 1.53 16 28 C -0.14 -1.71 8.91 71.98 0.64 -1.07 16 29 C 0.11 1.43 6.46 86.52 0.56 1.99 16 30 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 31 H 0.05 0.66 7.87 -2.39 -0.02 0.64 16 32 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 33 H 0.06 0.80 7.79 -2.38 -0.02 0.78 16 34 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 35 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.05 0.94 8.04 -2.38 -0.02 0.92 16 38 H 0.05 0.90 7.83 -2.39 -0.02 0.88 16 39 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.12 1.30 7.95 -2.39 -0.02 1.28 16 41 H 0.06 1.75 7.88 -2.39 -0.02 1.74 16 42 H 0.07 2.03 8.06 -2.39 -0.02 2.01 16 43 H 0.35 10.42 7.75 -89.70 -0.70 9.73 16 44 H 0.10 3.08 8.14 -2.39 -0.02 3.06 16 45 H 0.07 2.01 8.07 -2.39 -0.02 1.99 16 46 H 0.40 19.44 7.90 -92.71 -0.73 18.70 16 47 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 48 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 49 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 50 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 52 H 0.11 0.84 7.02 -2.39 -0.02 0.82 16 Total: -1.00 -73.14 424.51 0.06 -73.08 By element: Atomic # 1 Polarization: 39.55 SS G_CDS: -0.52 Total: 39.03 kcal Atomic # 6 Polarization: 15.02 SS G_CDS: 7.06 Total: 22.08 kcal Atomic # 7 Polarization: -111.62 SS G_CDS: -6.92 Total: -118.54 kcal Atomic # 8 Polarization: -59.08 SS G_CDS: -1.59 Total: -60.66 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -73.14 0.06 -73.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755103295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.749 kcal (2) G-P(sol) polarization free energy of solvation -73.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.083 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds