Wall clock time and date at job start Wed Apr 1 2020 00:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42907 * 113.99859 * 2 1 4 4 C 1.52998 * 109.47103 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.46978 * 180.02562 * 4 3 2 6 6 C 1.50706 * 109.47016 * 180.02562 * 5 4 3 7 7 O 1.21279 * 119.99769 * 359.97438 * 6 5 4 8 8 N 1.34780 * 119.99852 * 179.97438 * 6 5 4 9 9 C 1.46494 * 119.99864 * 179.97438 * 8 6 5 10 10 H 1.09000 * 109.52430 * 324.87677 * 9 8 6 11 11 C 1.53121 * 109.52286 * 85.00139 * 9 8 6 12 12 C 1.53038 * 109.27580 * 62.31361 * 11 9 8 13 13 N 1.46848 * 109.52195 * 59.18289 * 12 11 9 14 14 C 1.46908 * 110.99697 * 174.15860 * 13 12 11 15 15 C 1.50706 * 109.46841 * 60.19768 * 14 13 12 16 16 O 1.21285 * 120.00215 * 5.40572 * 15 14 13 17 17 N 1.34773 * 119.99624 * 185.40996 * 15 14 13 18 18 C 1.37095 * 120.00017 * 180.02562 * 17 15 14 19 19 H 1.08003 * 119.99895 * 359.97438 * 18 17 15 20 20 C 1.38957 * 120.00221 * 180.02562 * 18 17 15 21 21 N 1.31406 * 119.99667 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00089 * 179.97438 * 20 18 17 23 23 H 1.48507 * 109.47190 * 89.99736 * 22 20 18 24 24 H 1.48501 * 109.47258 * 209.99788 * 22 20 18 25 25 H 1.48500 * 109.47264 * 329.99852 * 22 20 18 26 26 C 1.46843 * 111.19559 * 298.25341 * 13 12 11 27 27 H 1.09005 * 109.46907 * 301.73737 * 26 13 12 28 28 C 1.53001 * 109.46075 * 181.76050 * 26 13 12 29 29 C 1.53035 * 109.52435 * 61.74590 * 26 13 12 30 30 H 1.09000 * 109.47370 * 299.99978 * 1 2 3 31 31 H 1.09002 * 109.47583 * 59.99973 * 1 2 3 32 32 H 1.08999 * 109.47055 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.46768 * 59.99842 * 3 2 1 34 34 H 1.08997 * 109.47080 * 300.00089 * 3 2 1 35 35 H 1.08998 * 109.47012 * 60.00083 * 4 3 2 36 36 H 1.09007 * 109.47139 * 300.00157 * 4 3 2 37 37 H 1.08998 * 109.47734 * 59.99848 * 5 4 3 38 38 H 1.09006 * 109.47068 * 299.99263 * 5 4 3 39 39 H 0.96998 * 120.00051 * 0.02562 * 8 6 5 40 40 H 1.09004 * 109.50500 * 302.37390 * 11 9 8 41 41 H 1.08995 * 109.50752 * 182.25302 * 11 9 8 42 42 H 1.08999 * 109.46351 * 299.16251 * 12 11 9 43 43 H 1.09003 * 109.45966 * 179.19464 * 12 11 9 44 44 H 1.08998 * 109.46571 * 180.19111 * 14 13 12 45 45 H 1.08993 * 109.47117 * 300.19555 * 14 13 12 46 46 H 0.97000 * 120.00128 * 359.97438 * 17 15 14 47 47 H 0.97006 * 119.99753 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.47284 * 55.68799 * 28 26 13 49 49 H 1.08997 * 109.47401 * 295.68688 * 28 26 13 50 50 H 1.09003 * 109.46861 * 175.69306 * 28 26 13 51 51 H 1.08999 * 109.50179 * 60.76013 * 29 26 13 52 52 H 1.08995 * 109.51053 * 180.87585 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 6 4.1576 2.5825 0.0000 6 6 5.6600 2.4635 -0.0013 7 8 6.1815 1.3686 -0.0021 8 7 6.4239 3.5739 -0.0015 9 6 7.8842 3.4583 -0.0022 10 1 8.1813 2.5918 0.5887 11 6 8.3838 3.2927 -1.4401 12 6 8.0168 4.5389 -2.2490 13 7 8.6296 5.7224 -1.6322 14 6 8.4140 6.9178 -2.4585 15 6 6.9350 7.1660 -2.6065 16 8 6.1410 6.4807 -1.9974 17 7 6.4945 8.1495 -3.4160 18 6 5.1490 8.3757 -3.5503 19 1 4.4421 7.7655 -3.0078 20 6 4.6948 9.3894 -4.3852 21 7 5.5551 10.1314 -5.0456 22 14 2.8616 9.6971 -4.5688 23 1 2.4199 10.6801 -3.5470 24 1 2.5831 10.2340 -5.9251 25 1 2.1243 8.4219 -4.3802 26 6 8.1292 5.9288 -0.2672 27 1 7.0450 6.0399 -0.2907 28 6 8.7585 7.1935 0.3206 29 6 8.4994 4.7242 0.6009 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6885 1.8464 0.8900 34 1 1.6885 1.8464 -0.8900 35 1 3.8566 0.6440 -0.8909 36 1 3.8574 0.6436 0.8891 37 1 3.8363 3.1229 0.8904 38 1 3.8357 3.1239 -0.8896 39 1 6.0067 4.4496 -0.0005 40 1 7.9161 2.4165 -1.8892 41 1 9.4664 3.1666 -1.4370 42 1 6.9333 4.6566 -2.2633 43 1 8.3837 4.4303 -3.2697 44 1 8.8808 7.7789 -1.9803 45 1 8.8570 6.7641 -3.4424 46 1 7.1295 8.6978 -3.9029 47 1 5.2380 10.8393 -5.6282 48 1 8.5585 8.0387 -0.3379 49 1 9.8353 7.0533 0.4150 50 1 8.3301 7.3893 1.3036 51 1 9.5839 4.6206 0.6361 52 1 8.1144 4.8706 1.6100 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755158018.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:21 Heat of formation + Delta-G solvation = -125.508857 kcal Electronic energy + Delta-G solvation = -31322.109488 eV Core-core repulsion = 27128.278846 eV Total energy + Delta-G solvation = -4193.830642 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.35983 -39.17655 -38.08757 -37.40575 -34.77760 -33.86887 -33.66108 -32.11530 -31.56160 -31.21872 -28.18179 -27.29937 -26.61507 -25.78153 -24.55601 -22.77074 -22.23347 -21.23107 -20.44351 -19.45314 -18.73880 -17.84250 -17.28147 -16.48828 -16.34959 -16.11608 -15.60036 -15.49709 -15.29794 -15.10459 -14.99743 -14.59627 -14.41936 -14.02787 -13.89528 -13.61495 -13.43770 -12.95876 -12.83882 -12.35975 -12.19505 -12.18318 -12.04654 -11.87993 -11.77382 -11.65965 -11.65621 -11.32596 -11.19828 -11.17567 -11.04694 -10.99323 -10.53745 -10.45994 -10.42211 -10.32744 -9.93455 -9.85933 -9.68672 -9.52831 -9.24697 -8.83297 -8.07187 -7.41731 -6.52582 -3.94169 2.79627 3.07772 3.18208 3.21491 3.22500 3.71990 3.75536 4.07536 4.27941 4.72155 4.83431 4.86360 4.93369 4.96340 5.03611 5.10694 5.12137 5.15776 5.20528 5.27259 5.30810 5.36760 5.42472 5.43587 5.56186 5.61853 5.67709 5.74957 5.81572 5.87422 5.95425 5.99252 6.02328 6.04542 6.13233 6.15874 6.18479 6.22471 6.34257 6.38515 6.56605 6.71360 6.76377 6.96204 7.37785 7.43367 7.49695 7.71244 7.93443 8.39680 8.48144 9.05270 9.42156 9.91775 10.63824 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007219 B = 0.003547 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3877.462464 B = 7892.419231 C =11144.192737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.060 3.940 4 C -0.100 4.100 5 C -0.141 4.141 6 C 0.516 3.484 7 O -0.550 6.550 8 N -0.717 5.717 9 C 0.147 3.853 10 H 0.083 0.917 11 C -0.123 4.123 12 C 0.040 3.960 13 N -0.508 5.508 14 C 0.035 3.965 15 C 0.409 3.591 16 O -0.597 6.597 17 N -0.555 5.555 18 C -0.302 4.302 19 H 0.102 0.898 20 C 0.025 3.975 21 N -0.897 5.897 22 Si 0.929 3.071 23 H -0.278 1.278 24 H -0.283 1.283 25 H -0.270 1.270 26 C 0.061 3.939 27 H 0.084 0.916 28 C -0.146 4.146 29 C -0.116 4.116 30 H 0.040 0.960 31 H 0.041 0.959 32 H 0.084 0.916 33 H 0.049 0.951 34 H 0.052 0.948 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.408 0.592 40 H 0.066 0.934 41 H 0.072 0.928 42 H 0.076 0.924 43 H 0.062 0.938 44 H 0.094 0.906 45 H 0.086 0.914 46 H 0.393 0.607 47 H 0.273 0.727 48 H 0.059 0.941 49 H 0.056 0.944 50 H 0.053 0.947 51 H 0.080 0.920 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 -10.107 9.837 14.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.017 4.017 4 C -0.138 4.138 5 C -0.181 4.181 6 C 0.303 3.697 7 O -0.428 6.428 8 N -0.370 5.370 9 C 0.042 3.958 10 H 0.101 0.899 11 C -0.162 4.162 12 C -0.088 4.088 13 N -0.232 5.232 14 C -0.096 4.096 15 C 0.195 3.805 16 O -0.485 6.485 17 N -0.190 5.190 18 C -0.432 4.432 19 H 0.120 0.880 20 C -0.178 4.178 21 N -0.538 5.538 22 Si 0.756 3.244 23 H -0.204 1.204 24 H -0.208 1.208 25 H -0.195 1.195 26 C -0.047 4.047 27 H 0.101 0.899 28 C -0.204 4.204 29 C -0.154 4.154 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.111 0.889 38 H 0.117 0.883 39 H 0.245 0.755 40 H 0.085 0.915 41 H 0.090 0.910 42 H 0.094 0.906 43 H 0.080 0.920 44 H 0.112 0.888 45 H 0.104 0.896 46 H 0.226 0.774 47 H 0.083 0.917 48 H 0.078 0.922 49 H 0.075 0.925 50 H 0.072 0.928 51 H 0.098 0.902 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.710 -11.419 10.128 15.280 hybrid contribution -1.791 1.611 -0.704 2.510 sum -1.081 -9.808 9.424 13.645 Atomic orbital electron populations 1.22735 0.81119 1.02650 1.00016 1.87876 1.19615 1.28184 1.95437 1.22586 0.94210 0.84545 1.00366 1.21185 0.91980 0.95953 1.04724 1.21556 0.92448 0.99120 1.04979 1.20507 0.89387 0.84271 0.75539 1.90673 1.75223 1.26699 1.50252 1.46205 1.06893 1.09447 1.74475 1.20938 0.79493 0.98461 0.96889 0.89926 1.21929 1.01179 0.97841 0.95210 1.22250 1.00819 0.88961 0.96765 1.62431 1.56582 1.02462 1.01675 1.22146 0.94046 0.94570 0.98875 1.21066 0.90879 0.84131 0.84460 1.90327 1.57154 1.50413 1.50588 1.42067 1.08276 1.29407 1.39270 1.19681 0.82888 1.15493 1.25163 0.87985 1.25287 1.00223 0.96060 0.96210 1.69606 1.34696 1.20712 1.28763 0.85881 0.82189 0.78771 0.77578 1.20361 1.20842 1.19477 1.21843 1.00618 0.93939 0.88298 0.89887 1.21900 1.00701 0.97455 1.00298 1.21915 1.01495 0.93681 0.98346 0.94131 0.94015 0.89717 0.93244 0.93017 0.90345 0.90504 0.88876 0.88306 0.75516 0.91532 0.90982 0.90604 0.91972 0.88848 0.89627 0.77402 0.91718 0.92202 0.92486 0.92765 0.90171 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 101.05 1.11 1.37 16 2 O -0.39 -4.64 10.70 -35.23 -0.38 -5.02 16 3 C 0.06 0.62 5.94 37.16 0.22 0.85 16 4 C -0.10 -1.18 4.87 -26.73 -0.13 -1.31 16 5 C -0.14 -1.61 5.70 -27.88 -0.16 -1.77 16 6 C 0.52 7.39 7.80 -10.98 -0.09 7.30 16 7 O -0.55 -9.50 15.65 5.56 0.09 -9.42 16 8 N -0.72 -9.84 4.35 -53.69 -0.23 -10.07 16 9 C 0.15 1.96 2.80 -67.81 -0.19 1.77 16 10 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 11 C -0.12 -1.73 5.76 -26.65 -0.15 -1.88 16 12 C 0.04 0.63 4.86 -3.83 -0.02 0.62 16 13 N -0.51 -7.77 4.69 -228.12 -1.07 -8.84 16 14 C 0.04 0.58 5.43 -4.97 -0.03 0.56 16 15 C 0.41 8.61 7.18 -10.98 -0.08 8.53 16 16 O -0.60 -13.48 11.22 5.55 0.06 -13.42 16 17 N -0.56 -13.09 5.29 -10.96 -0.06 -13.14 16 18 C -0.30 -7.90 9.68 -14.93 -0.14 -8.05 16 19 H 0.10 2.78 7.16 -52.48 -0.38 2.40 16 20 C 0.02 0.63 5.50 -17.47 -0.10 0.53 16 21 N -0.90 -23.52 13.05 55.50 0.72 -22.79 16 22 Si 0.93 20.14 29.55 -169.99 -5.02 15.12 16 23 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 26 C 0.06 0.88 1.89 -67.72 -0.13 0.75 16 27 H 0.08 1.42 4.15 -51.93 -0.22 1.20 16 28 C -0.15 -1.91 8.92 37.16 0.33 -1.58 16 29 C -0.12 -1.41 5.04 -26.65 -0.13 -1.55 16 30 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.08 1.04 8.10 -51.93 -0.42 0.62 16 36 H 0.08 0.96 8.10 -51.93 -0.42 0.54 16 37 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 38 H 0.10 1.12 8.14 -51.93 -0.42 0.70 16 39 H 0.41 5.74 7.02 -40.82 -0.29 5.46 16 40 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.08 1.43 5.26 -51.93 -0.27 1.15 16 43 H 0.06 0.99 8.12 -51.93 -0.42 0.57 16 44 H 0.09 1.43 5.88 -51.93 -0.31 1.12 16 45 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 47 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 48 H 0.06 0.86 5.99 -51.93 -0.31 0.55 16 49 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 52 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 LS Contribution 405.76 15.07 6.11 6.11 Total: -1.00 -29.72 405.76 -8.26 -37.97 By element: Atomic # 1 Polarization: 26.15 SS G_CDS: -8.80 Total: 17.35 kcal Atomic # 6 Polarization: 5.82 SS G_CDS: 0.32 Total: 6.14 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.64 Total: -54.85 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.23 Total: -27.85 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -29.72 -8.26 -37.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755158018.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.535 kcal (2) G-P(sol) polarization free energy of solvation -29.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds