Wall clock time and date at job start Wed Apr 1 2020 00:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42899 * 114.00256 * 2 1 4 4 C 1.52995 * 109.47298 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47330 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47418 * 179.97438 * 5 4 3 7 7 O 1.21289 * 120.00031 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00435 * 180.02562 * 6 5 4 9 9 C 1.46498 * 120.00287 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.57795 * 34.83904 * 9 8 6 11 11 C 1.53121 * 109.52398 * 274.68087 * 9 8 6 12 12 C 1.53034 * 109.27880 * 297.74972 * 11 9 8 13 13 N 1.46841 * 109.52458 * 300.82135 * 12 11 9 14 14 C 1.46905 * 111.00224 * 185.83845 * 13 12 11 15 15 C 1.50704 * 109.46913 * 300.41101 * 14 13 12 16 16 O 1.21289 * 120.00040 * 354.33743 * 15 14 13 17 17 N 1.34774 * 119.99364 * 174.33160 * 15 14 13 18 18 C 1.37106 * 119.99611 * 180.02562 * 17 15 14 19 19 H 1.08005 * 119.99515 * 0.02562 * 18 17 15 20 20 C 1.38947 * 120.00194 * 179.97438 * 18 17 15 21 21 N 1.31411 * 119.99676 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00010 * 179.97438 * 20 18 17 23 23 H 1.48492 * 109.47435 * 270.00265 * 22 20 18 24 24 H 1.48502 * 109.46958 * 150.00305 * 22 20 18 25 25 H 1.48505 * 109.47025 * 30.00324 * 22 20 18 26 26 C 1.46845 * 111.20232 * 61.74031 * 13 12 11 27 27 H 1.09003 * 109.46086 * 58.26219 * 26 13 12 28 28 C 1.52998 * 109.46510 * 178.24295 * 26 13 12 29 29 C 1.53045 * 109.52195 * 298.26098 * 26 13 12 30 30 H 1.09000 * 109.46658 * 299.99729 * 1 2 3 31 31 H 1.08997 * 109.47081 * 59.99527 * 1 2 3 32 32 H 1.08999 * 109.47346 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.46832 * 60.00414 * 3 2 1 34 34 H 1.08996 * 109.47283 * 300.00545 * 3 2 1 35 35 H 1.09002 * 109.47147 * 60.00041 * 4 3 2 36 36 H 1.08996 * 109.47443 * 300.00501 * 4 3 2 37 37 H 1.09004 * 109.46785 * 60.00477 * 5 4 3 38 38 H 1.08996 * 109.47297 * 300.00628 * 5 4 3 39 39 H 0.97002 * 119.99954 * 0.02562 * 8 6 5 40 40 H 1.08999 * 109.49864 * 57.69034 * 11 9 8 41 41 H 1.08996 * 109.50404 * 177.76941 * 11 9 8 42 42 H 1.09004 * 109.46646 * 180.79999 * 12 11 9 43 43 H 1.09008 * 109.46075 * 60.83559 * 12 11 9 44 44 H 1.09000 * 109.47033 * 180.41416 * 14 13 12 45 45 H 1.08994 * 109.46967 * 60.41075 * 14 13 12 46 46 H 0.96993 * 120.00749 * 0.02562 * 17 15 14 47 47 H 0.96999 * 120.00572 * 0.02562 * 21 20 18 48 48 H 1.09001 * 109.47051 * 53.15663 * 28 26 13 49 49 H 1.09001 * 109.46771 * 173.15167 * 28 26 13 50 50 H 1.08996 * 109.47416 * 293.15130 * 28 26 13 51 51 H 1.08998 * 109.50392 * 179.11861 * 29 26 13 52 52 H 1.08992 * 109.50097 * 299.19634 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 6 4.1578 2.5823 0.0000 6 6 5.6601 2.4633 0.0013 7 8 6.1817 1.3683 0.0021 8 7 6.4241 3.5736 0.0015 9 6 7.8845 3.4579 0.0022 10 1 8.1823 2.5887 -0.5843 11 6 8.3847 3.3002 1.4408 12 6 8.0168 4.5502 2.2434 13 7 8.6281 5.7310 1.6204 14 6 8.4116 6.9305 2.4404 15 6 6.9323 7.1695 2.6003 16 8 6.1378 6.4775 1.9993 17 7 6.4922 8.1520 3.4111 18 6 5.1463 8.3691 3.5569 19 1 4.4389 7.7525 3.0223 20 6 4.6925 9.3817 4.3932 21 7 5.5534 10.1316 5.0439 22 14 2.8589 9.6779 4.5913 23 1 2.4023 10.6555 3.5711 24 1 2.5883 10.2162 5.9486 25 1 2.1284 8.3975 4.4118 26 6 8.1270 5.9300 0.2545 27 1 7.0428 6.0401 0.2778 28 6 8.7549 7.1923 -0.3400 29 6 8.4982 4.7212 -0.6077 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.6887 1.8463 0.8901 34 1 1.6886 1.8464 -0.8899 35 1 3.8574 0.6435 -0.8891 36 1 3.8567 0.6438 0.8908 37 1 3.8359 3.1237 0.8896 38 1 3.8365 3.1227 -0.8903 39 1 6.0070 4.4494 0.0012 40 1 7.9179 2.4259 1.8945 41 1 9.4673 3.1745 1.4379 42 1 8.3840 4.4472 3.2646 43 1 6.9331 4.6669 2.2574 44 1 8.8681 7.7916 1.9523 45 1 8.8645 6.7865 3.4213 46 1 7.1276 8.7055 3.8914 47 1 6.5056 9.9785 4.9402 48 1 9.8398 7.1345 -0.2519 49 1 8.4797 7.2743 -1.3915 50 1 8.3926 8.0672 0.1997 51 1 8.1127 4.8622 -1.6174 52 1 9.5827 4.6190 -0.6433 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755158019.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:24 Heat of formation + Delta-G solvation = -148.519943 kcal Electronic energy + Delta-G solvation = -31362.959614 eV Core-core repulsion = 27168.131136 eV Total energy + Delta-G solvation = -4194.828478 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.67572 -40.61085 -39.16025 -38.78561 -36.50297 -35.65699 -34.67129 -33.35753 -33.18724 -32.56030 -29.24211 -28.40360 -27.84029 -26.64272 -26.11039 -24.08684 -23.27501 -22.54542 -21.55952 -21.37163 -20.14743 -19.78948 -18.35335 -18.00558 -17.38331 -17.23657 -17.05386 -16.67567 -16.63624 -16.44362 -16.13417 -15.95927 -15.76492 -15.50331 -15.32843 -14.93440 -14.59250 -14.43351 -14.21326 -13.62738 -13.43286 -13.28571 -13.09757 -13.04903 -12.95564 -12.85538 -12.77110 -12.67031 -12.59980 -12.39470 -12.02204 -11.96593 -11.94907 -11.92842 -11.81246 -11.63824 -11.32020 -11.15714 -10.93233 -10.89015 -10.65151 -10.06104 -10.02525 -8.97134 -8.88395 -6.03813 1.50822 1.53873 1.62396 1.79194 2.00929 2.17853 2.42159 2.86364 2.94493 3.10713 3.19110 3.65775 3.77776 3.81213 3.93005 3.99788 4.12199 4.15017 4.23771 4.28011 4.39073 4.41136 4.42324 4.48455 4.52230 4.54251 4.55400 4.57275 4.64559 4.66137 4.75787 4.79608 4.83156 4.92134 4.93937 5.04028 5.06788 5.10796 5.17953 5.20979 5.25200 5.45795 5.58844 5.63706 5.96862 6.01004 6.16313 6.20272 6.53308 6.58354 6.77417 7.22791 7.47472 7.93474 8.57189 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.007226 B = 0.003556 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3874.149373 B = 7871.463840 C =11120.415229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.420 6.420 3 C 0.061 3.939 4 C -0.094 4.094 5 C -0.134 4.134 6 C 0.512 3.488 7 O -0.583 6.583 8 N -0.715 5.715 9 C 0.144 3.856 10 H 0.084 0.916 11 C -0.114 4.114 12 C 0.043 3.957 13 N -0.494 5.494 14 C 0.044 3.956 15 C 0.417 3.583 16 O -0.604 6.604 17 N -0.587 5.587 18 C -0.402 4.402 19 H 0.077 0.923 20 C -0.045 4.045 21 N -0.921 5.921 22 Si 1.132 2.868 23 H -0.271 1.271 24 H -0.278 1.278 25 H -0.276 1.276 26 C 0.059 3.941 27 H 0.054 0.946 28 C -0.141 4.141 29 C -0.105 4.105 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.096 0.904 33 H 0.056 0.944 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.056 0.944 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.407 0.593 40 H 0.051 0.949 41 H 0.089 0.911 42 H 0.059 0.941 43 H 0.045 0.955 44 H 0.113 0.887 45 H 0.099 0.901 46 H 0.381 0.619 47 H 0.259 0.741 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.037 0.963 51 H 0.084 0.916 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.617 -10.467 -11.675 15.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.340 6.340 3 C -0.015 4.015 4 C -0.132 4.132 5 C -0.174 4.174 6 C 0.300 3.700 7 O -0.464 6.464 8 N -0.366 5.366 9 C 0.040 3.960 10 H 0.102 0.898 11 C -0.153 4.153 12 C -0.085 4.085 13 N -0.217 5.217 14 C -0.088 4.088 15 C 0.204 3.796 16 O -0.491 6.491 17 N -0.225 5.225 18 C -0.531 4.531 19 H 0.095 0.905 20 C -0.243 4.243 21 N -0.561 5.561 22 Si 0.953 3.047 23 H -0.197 1.197 24 H -0.203 1.203 25 H -0.201 1.201 26 C -0.049 4.049 27 H 0.071 0.929 28 C -0.198 4.198 29 C -0.143 4.143 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.075 0.925 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.074 0.926 37 H 0.118 0.882 38 H 0.137 0.863 39 H 0.243 0.757 40 H 0.070 0.930 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.063 0.937 44 H 0.131 0.869 45 H 0.118 0.882 46 H 0.215 0.785 47 H 0.070 0.930 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.056 0.944 51 H 0.103 0.897 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -0.032 -10.994 -11.351 15.803 hybrid contribution 0.264 0.220 0.077 0.352 sum 0.231 -10.774 -11.274 15.596 Atomic orbital electron populations 1.22935 0.79370 1.03846 1.00952 1.87831 1.21625 1.28879 1.95650 1.22575 0.92948 0.84493 1.01482 1.21087 0.93322 0.95657 1.03150 1.21547 0.90371 0.99279 1.06199 1.20993 0.90564 0.83787 0.74681 1.90658 1.76026 1.27818 1.51869 1.46250 1.07235 1.09206 1.73921 1.21012 0.79336 0.99319 0.96353 0.89808 1.21844 1.02121 0.96007 0.95317 1.22174 0.98885 0.90208 0.97265 1.62546 1.55730 1.01461 1.01995 1.22210 0.90227 0.95984 1.00396 1.22029 0.92963 0.82244 0.82317 1.90351 1.58500 1.49676 1.50583 1.42230 1.07355 1.31262 1.41674 1.20513 0.83902 1.19250 1.29466 0.90518 1.27710 1.11459 0.92304 0.92800 1.70939 1.03219 1.39957 1.41976 0.82621 0.68023 0.76764 0.77297 1.19663 1.20317 1.20133 1.21889 0.98973 0.96005 0.88051 0.92853 1.21839 1.01780 0.95453 1.00734 1.21866 1.02520 0.91532 0.98378 0.93380 0.92840 0.88529 0.92526 0.91391 0.91441 0.92553 0.88225 0.86277 0.75669 0.93023 0.89215 0.92241 0.93664 0.86919 0.88244 0.78515 0.92965 0.90640 0.90919 0.94410 0.89726 0.88398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 11.01 113.37 1.25 1.63 16 2 O -0.42 -9.66 10.70 -148.98 -1.59 -11.26 16 3 C 0.06 1.23 5.94 71.98 0.43 1.66 16 4 C -0.09 -2.22 4.87 30.59 0.15 -2.07 16 5 C -0.13 -3.01 5.70 29.85 0.17 -2.84 16 6 C 0.51 14.61 7.80 87.66 0.68 15.29 16 7 O -0.58 -20.35 15.65 -3.06 -0.05 -20.40 16 8 N -0.71 -19.20 4.34 -442.15 -1.92 -21.12 16 9 C 0.14 3.63 2.81 45.07 0.13 3.75 16 10 H 0.08 2.16 7.58 -2.39 -0.02 2.15 16 11 C -0.11 -3.08 5.76 30.65 0.18 -2.90 16 12 C 0.04 1.33 4.85 86.33 0.42 1.75 16 13 N -0.49 -14.14 4.69 -875.63 -4.11 -18.25 16 14 C 0.04 1.37 5.45 85.56 0.47 1.84 16 15 C 0.42 17.54 7.18 87.66 0.63 18.17 16 16 O -0.60 -27.75 11.22 -3.06 -0.03 -27.79 16 17 N -0.59 -27.74 5.28 -306.98 -1.62 -29.37 16 18 C -0.40 -21.54 9.68 84.04 0.81 -20.73 16 19 H 0.08 4.37 7.16 -2.91 -0.02 4.35 16 20 C -0.04 -2.33 5.50 84.93 0.47 -1.86 16 21 N -0.92 -50.20 13.68 21.66 0.30 -49.90 16 22 Si 1.13 46.85 29.92 68.60 2.05 48.90 16 23 H -0.27 -10.57 7.11 99.48 0.71 -9.86 16 24 H -0.28 -11.32 7.11 99.48 0.71 -10.61 16 25 H -0.28 -10.91 7.11 99.48 0.71 -10.21 16 26 C 0.06 1.57 1.90 44.94 0.09 1.65 16 27 H 0.05 1.77 4.18 -2.39 -0.01 1.76 16 28 C -0.14 -3.25 8.52 71.98 0.61 -2.64 16 29 C -0.10 -2.24 5.03 30.65 0.15 -2.09 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.65 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 1.20 8.14 -2.39 -0.02 1.19 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 36 H 0.06 1.55 8.10 -2.39 -0.02 1.54 16 37 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 38 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.41 11.30 7.01 -92.71 -0.65 10.65 16 40 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.06 1.86 8.12 -2.39 -0.02 1.84 16 43 H 0.05 1.72 5.22 -2.38 -0.01 1.71 16 44 H 0.11 3.15 6.10 -2.39 -0.01 3.14 16 45 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 46 H 0.38 16.99 6.73 -92.71 -0.62 16.36 16 47 H 0.26 13.67 6.78 -92.71 -0.63 13.04 16 48 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 50 H 0.04 1.00 6.65 -2.39 -0.02 0.99 16 51 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -67.82 404.52 -0.55 -68.38 By element: Atomic # 1 Polarization: 50.40 SS G_CDS: -0.20 Total: 50.19 kcal Atomic # 6 Polarization: 3.98 SS G_CDS: 6.63 Total: 10.61 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -7.36 Total: -118.63 kcal Atomic # 8 Polarization: -57.77 SS G_CDS: -1.68 Total: -59.45 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.05 Total: 48.90 kcal Total: -67.82 -0.55 -68.38 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755158019.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.143 kcal (2) G-P(sol) polarization free energy of solvation -67.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds