Wall clock time and date at job start Wed Apr 1 2020 00:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99838 * 2 1 4 4 C 1.53002 * 109.46712 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46798 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46935 * 179.97438 * 5 4 3 7 7 O 1.21274 * 119.99880 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99853 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00133 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.51683 * 324.87156 * 9 8 6 11 11 C 1.53116 * 109.52582 * 84.99794 * 9 8 6 12 12 C 1.53036 * 109.27762 * 177.56089 * 11 9 8 13 13 N 1.46836 * 109.52370 * 300.81889 * 12 11 9 14 14 C 1.46900 * 110.99960 * 185.83852 * 13 12 11 15 15 C 1.50701 * 109.47079 * 75.58044 * 14 13 12 16 16 O 1.21296 * 120.00074 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00312 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00210 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99941 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00060 * 180.02562 * 18 17 15 21 21 N 1.31406 * 120.00130 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99961 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47146 * 269.99900 * 22 20 18 24 24 H 1.48498 * 109.46978 * 150.00119 * 22 20 18 25 25 H 1.48495 * 109.47235 * 29.99966 * 22 20 18 26 26 C 1.46849 * 111.19877 * 61.74536 * 13 12 11 27 27 H 1.09002 * 109.46115 * 58.27082 * 26 13 12 28 28 C 1.52997 * 109.46497 * 178.23928 * 26 13 12 29 29 C 1.53040 * 109.52206 * 298.25585 * 26 13 12 30 30 H 1.09008 * 109.47400 * 300.00326 * 1 2 3 31 31 H 1.09002 * 109.47074 * 60.00139 * 1 2 3 32 32 H 1.08999 * 109.47417 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47074 * 59.99825 * 3 2 1 34 34 H 1.08994 * 109.47292 * 299.99871 * 3 2 1 35 35 H 1.08996 * 109.46855 * 60.00080 * 4 3 2 36 36 H 1.09000 * 109.47147 * 299.99343 * 4 3 2 37 37 H 1.08999 * 109.47138 * 59.99911 * 5 4 3 38 38 H 1.09003 * 109.47048 * 299.99802 * 5 4 3 39 39 H 0.97000 * 120.00172 * 359.97438 * 8 6 5 40 40 H 1.09000 * 109.50691 * 57.61757 * 11 9 8 41 41 H 1.09006 * 109.53623 * 297.52544 * 11 9 8 42 42 H 1.09002 * 109.45831 * 180.80043 * 12 11 9 43 43 H 1.09001 * 109.45349 * 60.83277 * 12 11 9 44 44 H 1.08994 * 109.47250 * 315.57634 * 14 13 12 45 45 H 1.09002 * 109.47442 * 195.57235 * 14 13 12 46 46 H 0.96997 * 119.99783 * 0.02562 * 17 15 14 47 47 H 0.96999 * 120.00138 * 0.02562 * 21 20 18 48 48 H 1.09001 * 109.46947 * 52.24159 * 28 26 13 49 49 H 1.09004 * 109.47337 * 172.23798 * 28 26 13 50 50 H 1.08998 * 109.47219 * 292.24422 * 28 26 13 51 51 H 1.09001 * 109.50107 * 299.23798 * 29 26 13 52 52 H 1.08993 * 109.53359 * 179.13836 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0013 6 6 5.6601 2.4634 0.0026 7 8 6.1816 1.3685 0.0034 8 7 6.4240 3.5737 0.0028 9 6 7.8844 3.4581 0.0034 10 1 8.1809 2.5918 0.5948 11 6 8.3853 3.2921 -1.4339 12 6 9.9145 3.2330 -1.4324 13 7 10.4528 4.4674 -0.8470 14 6 11.9173 4.5063 -0.9551 15 6 12.3079 4.8301 -2.3741 16 8 11.4506 5.0103 -3.2131 17 7 13.6098 4.9185 -2.7113 18 6 13.9651 5.2126 -4.0023 19 1 13.2018 5.3730 -4.7493 20 6 15.3074 5.3032 -4.3500 21 7 16.2362 5.1075 -3.4413 22 14 15.7915 5.7046 -6.1090 23 1 15.9321 4.4452 -6.8834 24 1 17.0846 6.4346 -6.1121 25 1 14.7426 6.5528 -6.7298 26 6 10.0237 4.6243 0.5486 27 1 10.3530 3.7623 1.1288 28 6 10.6410 5.8970 1.1317 29 6 8.4977 4.7250 0.6063 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8574 0.6436 -0.8891 36 1 3.8567 0.6440 0.8909 37 1 3.8358 3.1231 0.8913 38 1 3.8366 3.1236 -0.8887 39 1 6.0069 4.4495 0.0017 40 1 8.0545 4.1392 -2.0348 41 1 7.9858 2.3694 -1.8549 42 1 10.2749 3.1291 -2.4559 43 1 10.2442 2.3776 -0.8428 44 1 12.3279 3.5355 -0.6776 45 1 12.3108 5.2718 -0.2863 46 1 14.2954 4.7733 -2.0406 47 1 15.9848 4.8994 -2.5278 48 1 10.4261 6.7393 0.4740 49 1 10.2165 6.0881 2.1173 50 1 11.7201 5.7704 1.2191 51 1 8.1687 5.5947 0.0376 52 1 8.1781 4.8261 1.6434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755158020.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:29 Heat of formation + Delta-G solvation = -125.701867 kcal Electronic energy + Delta-G solvation = -29783.663264 eV Core-core repulsion = 25589.824252 eV Total energy + Delta-G solvation = -4193.839012 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.35447 -39.23409 -38.31773 -37.74614 -35.27684 -34.18433 -33.98978 -32.32462 -31.79789 -30.94851 -28.48306 -27.37414 -26.71623 -25.98551 -24.23761 -23.02539 -22.44748 -21.31880 -20.52577 -19.78884 -19.40382 -17.84161 -17.53520 -16.77018 -16.65329 -16.37103 -16.18420 -15.65730 -15.57793 -15.28815 -15.14341 -14.47007 -14.33821 -14.03653 -13.91529 -13.78439 -13.71927 -13.41587 -13.19996 -12.56225 -12.48370 -12.39449 -12.24612 -12.12193 -11.99461 -11.77107 -11.71070 -11.44591 -11.30753 -11.18538 -11.03741 -10.99873 -10.87816 -10.69232 -10.46243 -10.19834 -10.10761 -9.94200 -9.82150 -9.48369 -9.17037 -8.49366 -7.98510 -7.87723 -6.70926 -3.83704 2.44546 2.83485 3.33741 3.37279 3.42025 3.56421 3.86617 3.92146 4.33110 4.35461 4.52827 4.58411 4.66029 4.81208 4.83588 4.86201 4.87840 4.96021 4.98348 4.98802 5.04671 5.17081 5.18664 5.24978 5.27784 5.31945 5.38933 5.44910 5.51827 5.62122 5.69891 5.71630 5.73252 5.83520 5.89079 5.92716 6.02743 6.05876 6.08195 6.18423 6.24074 6.40067 6.43105 6.72451 7.21769 7.30910 7.37612 7.86331 8.03909 8.12892 8.66037 8.86545 9.53321 9.95491 10.72786 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.001732 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.367076 B =16162.698972 C =17107.506434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.105 4.105 5 C -0.138 4.138 6 C 0.512 3.488 7 O -0.537 6.537 8 N -0.726 5.726 9 C 0.143 3.857 10 H 0.084 0.916 11 C -0.121 4.121 12 C 0.063 3.937 13 N -0.509 5.509 14 C 0.039 3.961 15 C 0.449 3.551 16 O -0.569 6.569 17 N -0.580 5.580 18 C -0.380 4.380 19 H 0.098 0.902 20 C -0.010 4.010 21 N -0.904 5.904 22 Si 1.093 2.907 23 H -0.285 1.285 24 H -0.281 1.281 25 H -0.284 1.284 26 C 0.084 3.916 27 H 0.039 0.961 28 C -0.149 4.149 29 C -0.114 4.114 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.086 0.914 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.400 0.600 40 H 0.075 0.925 41 H 0.068 0.932 42 H 0.093 0.907 43 H 0.026 0.974 44 H 0.048 0.952 45 H 0.094 0.906 46 H 0.374 0.626 47 H 0.261 0.739 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.059 0.941 51 H 0.079 0.921 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.590 -2.552 13.038 28.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.143 4.143 5 C -0.178 4.178 6 C 0.299 3.701 7 O -0.414 6.414 8 N -0.377 5.377 9 C 0.039 3.961 10 H 0.102 0.898 11 C -0.160 4.160 12 C -0.065 4.065 13 N -0.234 5.234 14 C -0.093 4.093 15 C 0.234 3.766 16 O -0.452 6.452 17 N -0.219 5.219 18 C -0.509 4.509 19 H 0.116 0.884 20 C -0.212 4.212 21 N -0.544 5.544 22 Si 0.919 3.081 23 H -0.212 1.212 24 H -0.207 1.207 25 H -0.210 1.210 26 C -0.025 4.025 27 H 0.057 0.943 28 C -0.207 4.207 29 C -0.153 4.153 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.234 0.766 40 H 0.094 0.906 41 H 0.087 0.913 42 H 0.111 0.889 43 H 0.044 0.956 44 H 0.066 0.934 45 H 0.112 0.888 46 H 0.207 0.793 47 H 0.072 0.928 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.078 0.922 51 H 0.098 0.902 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -24.574 -2.750 11.172 27.134 hybrid contribution -0.983 -0.297 1.919 2.177 sum -25.557 -3.047 13.092 28.877 Atomic orbital electron populations 1.22752 0.80942 1.02880 0.99950 1.87901 1.19747 1.27968 1.95407 1.22554 0.94095 0.84767 1.00151 1.21221 0.92113 0.95838 1.05109 1.21552 0.92212 0.99441 1.04605 1.20578 0.89383 0.84374 0.75811 1.90732 1.75079 1.26577 1.48966 1.46114 1.07084 1.08884 1.75577 1.21089 0.78585 0.98925 0.97480 0.89835 1.21915 0.95391 1.02706 0.95939 1.22049 0.94038 0.89014 1.01378 1.61522 1.08758 1.37502 1.15595 1.21975 0.88416 1.01100 0.97769 1.19715 0.83109 0.84464 0.89305 1.90513 1.49219 1.54232 1.51194 1.41948 1.05428 1.63460 1.11032 1.20547 0.95298 1.48550 0.86535 0.88373 1.26464 0.91110 0.96283 1.07393 1.70866 1.34766 1.45426 1.03296 0.83099 0.75889 0.76894 0.72181 1.21193 1.20697 1.20983 1.21530 0.94138 0.97698 0.89119 0.94309 1.21944 1.00658 0.97699 1.00380 1.21872 0.94907 0.97725 1.00773 0.94085 0.94021 0.89554 0.93285 0.93189 0.90154 0.90273 0.88763 0.88610 0.76644 0.90608 0.91338 0.88907 0.95590 0.93442 0.88846 0.79297 0.92789 0.91219 0.92226 0.92198 0.90246 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.56 10.70 -35.23 -0.38 -3.94 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 C -0.10 -0.87 4.87 -26.73 -0.13 -1.00 16 5 C -0.14 -0.89 5.70 -27.88 -0.16 -1.05 16 6 C 0.51 5.30 7.80 -10.99 -0.09 5.21 16 7 O -0.54 -7.98 15.65 5.56 0.09 -7.89 16 8 N -0.73 -6.53 5.08 -53.69 -0.27 -6.80 16 9 C 0.14 1.63 2.52 -67.81 -0.17 1.46 16 10 H 0.08 1.09 7.58 -51.93 -0.39 0.70 16 11 C -0.12 -1.68 5.67 -26.65 -0.15 -1.83 16 12 C 0.06 1.03 5.11 -3.84 -0.02 1.01 16 13 N -0.51 -8.23 4.05 -228.13 -0.92 -9.16 16 14 C 0.04 0.68 5.31 -4.98 -0.03 0.66 16 15 C 0.45 10.62 7.49 -10.98 -0.08 10.54 16 16 O -0.57 -15.50 14.74 5.54 0.08 -15.41 16 17 N -0.58 -14.68 5.28 -10.96 -0.06 -14.73 16 18 C -0.38 -10.76 9.68 -14.93 -0.14 -10.90 16 19 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 20 C -0.01 -0.29 5.50 -17.47 -0.10 -0.38 16 21 N -0.90 -25.52 13.68 55.50 0.76 -24.76 16 22 Si 1.09 24.58 29.92 -169.99 -5.09 19.50 16 23 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 26 C 0.08 1.04 2.44 -67.72 -0.17 0.88 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 C -0.15 -1.66 8.59 37.16 0.32 -1.34 16 29 C -0.11 -1.17 4.84 -26.65 -0.13 -1.30 16 30 H 0.04 0.18 8.14 -51.92 -0.42 -0.24 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 36 H 0.08 0.77 8.10 -51.93 -0.42 0.34 16 37 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.10 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.40 2.42 8.60 -40.82 -0.35 2.07 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 42 H 0.09 1.82 6.69 -51.93 -0.35 1.47 16 43 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.79 8.00 -51.93 -0.42 0.37 16 45 H 0.09 1.48 5.42 -51.93 -0.28 1.20 16 46 H 0.37 8.77 6.73 -40.82 -0.27 8.49 16 47 H 0.26 7.08 6.78 -40.82 -0.28 6.80 16 48 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 50 H 0.06 0.67 6.38 -51.93 -0.33 0.34 16 51 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 52 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 414.58 15.07 6.25 6.25 Total: -1.00 -35.86 414.58 -8.28 -44.14 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -9.03 Total: 8.92 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: 0.29 Total: 3.90 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.50 Total: -55.45 kcal Atomic # 8 Polarization: -27.04 SS G_CDS: -0.21 Total: -27.25 kcal Atomic # 14 Polarization: 24.58 SS G_CDS: -5.09 Total: 19.50 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -35.86 -8.28 -44.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755158020.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.562 kcal (2) G-P(sol) polarization free energy of solvation -35.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds